Rw7G010080

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004554
Physical Location & Seq
Reverse (-)
9341919 .. 9345879
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010080.1

Sequence Viewer

Length: 495 bp
ATGAGGGAACACCTATGCCTGGACCTGAATAGAGTTCGAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCCTTAAACTTGCGTTAAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACGCTAGCTAACACACTTAATTTTCTGTTAGCAGAGCTTGAGTACTTGGAGTTGCGAATCGAAGCCGATGATGCATGTGTTCTGTTGCAGTTGGCGTATTTTTTGGATGCATCTCCTCGCTTGCAAAAGTTATTGATTAAGGGGGACATTCTGGGGTCAGAGGTAAAGTTGTTGAAAGCTGAGAGCCACCCGCATAACAACTTGAAGTTAGCTGAGGTTGTTGGATTTAATGATTGCCCAGCAGCTATTGATAGTCGCATATATATTGGAAAATACTGCTGTATATGCTGCAAAAGGTGGTCATCGTTACTGTGTTGCCATGGTGTGAGCTCCGAAGAGGAAGGAAACCCGATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

164

Amino Acids

18.44

Weight (kDa)

5.58

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 19, 64
AgsI TTSAA 2 cut(s) 310, 340
AjnI CCWGG 2 cut(s) 18, 72
AluBI AGCT 8 cut(s) 103, 124, 143, 172, 314, 347, 380, 465
AluI AGCT 8 cut(s) 103, 124, 143, 172, 314, 347, 380, 465
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 100, 377, 423
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 37
AsuNHI GCTAGC 1 cut(s) 139
AvaII GGWCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 112, 389, 410
BciT130I CCWGG 2 cut(s) 20, 74
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 44, 140
BisI GCNGC 3 cut(s) 101, 378, 424
BlsI GCNGC 3 cut(s) 102, 379, 425
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 20, 74
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 20, 74
BmsI GCATC 3 cut(s) 196, 232, 254
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 58, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 64
BseBI CCWGG 2 cut(s) 20, 74
BseDI CCNNGG 2 cut(s) 58, 454
BseGI GGATG 2 cut(s) 73, 247
BseLI CCNNNNNNNGG 2 cut(s) 19, 64
BseMII CTCAG 2 cut(s) 306, 339
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 112, 389, 410
BseYI CCCAGC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 467
BslFI GGGAC 2 cut(s) 40, 293
BslI CCNNNNNNNGG 2 cut(s) 19, 64
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 40, 293
Bsp119I TTCGAA 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 467
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 307, 340
BspOI GCTAGC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 58, 454
BssT1I CCWWGG 2 cut(s) 58, 454
Bst2UI CCWGG 2 cut(s) 20, 74
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 465
BstBI TTCGAA 1 cut(s) 37
BstC8I GCNNGC 4 cut(s) 105, 109, 141, 257
BstDEI CTNAG 3 cut(s) 125, 315, 348
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 73, 247
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 206, 420
BstNI CCWGG 2 cut(s) 20, 74
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 18, 72
BstV1I GCAGC 3 cut(s) 112, 389, 410
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 2 cut(s) 73, 247
Cac8I GCNNGC 4 cut(s) 105, 109, 141, 257
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 210, 455
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 125, 315, 348
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 58, 454
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 465
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 18, 72
EcoT14I CCWWGG 2 cut(s) 58, 454
EcoT22I ATGCAT 2 cut(s) 211, 247
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 2 cut(s) 58, 454
FaeI CATG 2 cut(s) 213, 458
FaiI YATR 9 cut(s) 16, 211, 330, 395, 397, 399, 419, 421, 456
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 40, 293
FatI CATG 2 cut(s) 209, 454
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 101, 378, 424
FokI GGATG 2 cut(s) 80, 254
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 3 cut(s) 101, 378, 424
FspBI CTAG 2 cut(s) 44, 140
GluI GCNGC 3 cut(s) 101, 378, 424
GsaI CCCAGC 1 cut(s) 377
Hin1II CATG 2 cut(s) 213, 458
HinfI GANTC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 295, 469
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4V TGCA 5 cut(s) 209, 223, 245, 259, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 420
HpyF3I CTNAG 3 cut(s) 125, 315, 348
Hsp92II CATG 2 cut(s) 213, 458
LmnI GCTCC 1 cut(s) 470
LpnPI CCDG 7 cut(s) 5, 32, 38, 59, 86, 272, 387
Lsp1109I GCAGC 3 cut(s) 112, 389, 410
LweI GCATC 3 cut(s) 196, 232, 254
MaeI CTAG 2 cut(s) 44, 140
MaeIII GTNAC 1 cut(s) 441
MboII GAAGA 1 cut(s) 482
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 3 cut(s) 77, 154, 490
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 5 cut(s) 58, 261, 289, 343, 466
Mph1103I ATGCAT 2 cut(s) 211, 247
MseI TTAA 6 cut(s) 84, 95, 153, 273, 363, 493
MspR9I CCNGG 2 cut(s) 20, 74
MvaI CCWGG 2 cut(s) 20, 74
MwoI GCNNNNNNNGC 2 cut(s) 206, 420
NcoI CCATGG 1 cut(s) 454
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 213, 458
NsiI ATGCAT 2 cut(s) 211, 247
NspI RCATGY 1 cut(s) 213
NspV TTCGAA 1 cut(s) 37
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 3 cut(s) 102, 379, 425
Psp124BI GAGCTC 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 18, 72
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 2 cut(s) 18, 72
PspPI GGNCC 1 cut(s) 22
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 6 cut(s) 84, 95, 153, 273, 363, 493
SatI GCNGC 3 cut(s) 101, 378, 424
Sau96I GGNCC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 20, 74
SduI GDGCHC 1 cut(s) 467
SfaNI GCATC 3 cut(s) 196, 232, 254
SfuI TTCGAA 1 cut(s) 37
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 3 cut(s) 77, 154, 490
SsiI CCGC 1 cut(s) 326
SspMI CTAG 2 cut(s) 44, 140
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 18, 72
StyI CCWWGG 2 cut(s) 58, 454
TaaI ACNGT 1 cut(s) 447
TaqI TCGA 2 cut(s) 37, 195
TasI AATT 3 cut(s) 77, 154, 490
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 6 cut(s) 84, 95, 153, 273, 363, 493
Tru9I TTAA 6 cut(s) 84, 95, 153, 273, 363, 493
TseI GCWGC 3 cut(s) 100, 377, 423
VpaK11BI GGWCC 1 cut(s) 22
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 213
XspI CTAG 2 cut(s) 44, 140
ZrmI AGTACT 1 cut(s) 179
Zsp2I ATGCAT 2 cut(s) 211, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.