Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

62327061 .. 62328571

Gene Structure 1511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0508700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATTCCCTCCAAGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTTCTATCCACAGAGTGCCATATTTCAGCTTCATCATGTGGATGGTCTAACATTATCCGGTGTGAGGCAACTTCTTAAAGCCCAAGAAGACTCTGCTGAAGATTTTATTAATTTGACAGGACGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGACGGCTCCGTGAAGCCTATATTTATTTCAATTGGTCACCGAATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGACTTGCAAGTATCGTGTGCCAGAGCCTATCCGGCAGGTAAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

9.3

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	57 - 123	7.7e-16	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	49, 159
AgsI	TTSAA	1 cut(s)	285
AluBI	AGCT	2 cut(s)	64, 124
AluI	AGCT	2 cut(s)	64, 124
ApoI	RAATTY	1 cut(s)	297
AseI	ATTAAT	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	189
BccI	CCATC	2 cut(s)	131, 323
BceAI	ACGGC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	358
BglI	GCCNNNNNGGC	1 cut(s)	364
BglII	AGATCT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 159
Bse118I	RCCGGY	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	49, 159
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	234
BsiSI	CCGG	4 cut(s)	50, 84, 153, 364
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	49, 159
BsmFI	GGGAC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 364
BstNSI	RCATGY	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	83
CseI	GACGC	1 cut(s)	225
CviAII	CATG	2 cut(s)	6, 131
CviJI	RGCY	8 cut(s)	47, 64, 83, 124, 176, 261, 271, 358
CviKI_1	RGCY	8 cut(s)	47, 64, 83, 124, 176, 261, 271, 358
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
DraIII	CACNNNGTG	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	290
FaeI	CATG	2 cut(s)	9, 134
FaiI	YATR	6 cut(s)	7, 116, 132, 230, 232, 275
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	5, 130
FokI	GGATG	1 cut(s)	149
HapII	CCGG	4 cut(s)	50, 84, 153, 364
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	9, 134
HinfI	GANTC	2 cut(s)	13, 185
HpaII	CCGG	4 cut(s)	50, 84, 153, 364
HphI	GGTGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 364
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	9, 134
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	8 cut(s)	63, 97, 166, 198, 207, 353, 366, 377
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	3 cut(s)	85, 194, 206
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	4 cut(s)	205, 285, 297, 321
MlyI	GAGTC	2 cut(s)	7, 179
MnlI	CCTC	2 cut(s)	50, 153
MseI	TTAA	3 cut(s)	171, 204, 379
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	4 cut(s)	50, 84, 153, 364
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	61, 364
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	2 cut(s)	9, 134
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PleI	GAGTC	2 cut(s)	7, 179
PpsI	GAGTC	2 cut(s)	7, 179
PshBI	ATTAAT	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	171, 204, 379
Sau3AI	GATC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	7, 179
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	3 cut(s)	66, 126, 372
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	4 cut(s)	205, 285, 297, 321
StyD4I	CCNGG	1 cut(s)	48
TasI	AATT	4 cut(s)	205, 285, 297, 321
Tru1I	TTAA	3 cut(s)	171, 204, 379
Tru9I	TTAA	3 cut(s)	171, 204, 379
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	23, 92, 116
TspGWI	ACGGA	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.