Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001080.1

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

304 .. 2252

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ctggatttgagctgcacatctaatgtcggaaaggaaatagtactgtcgaacctttctgatataccagagtggatacttgttgatattctgtcactcctctcagtcaaggatgcggcattaatctgtttcacctgcaaagcatgggaaaatttgtggacctattctacaaatctgacttttgttgactacacaggcccctctgccaaccttgacattggactgaagattagagagagggaaaagtatgttggctgggtcagagatgttctaaagaagtacagagggacgaagcttgataagttccatatcttcttcgatttggacagcagctataaaagcgaaattgatgattgggtagagtttgctctcgaacacgatgttaaagcattgatcttggaaatggtcagcccttttgatccttctcgtaataactattcctttactaagcggattacgggcgagtccctccaagtattggtgcttgaaaatgttgatctgaatggagaggtttttcagcatatatctcattttcgaggacttgaacaactatcagtgactggtgcatctggtttaaatcgcatcagaatgtttggttcttctgtacgtttgaagtccttagtggtcagaaattgttggaatcttgagattattgagatctgtgatttacctcagcttgccttctttgagtttgagggaagacctatctgcctggacctgaactcagttccaaatctagtgaaagtgtcccttggcgagtatgacctggaattcttaaaagtagccttcaagcagcttgcttgctgtctctggtcggggataaatttgttgaaagctgagagccatccgcacaacaacttaaaggtggttgaggttattggattctttgattgcccagcagcgactgatattgtcacattcatagtggacaatgctgctgggctagaaagtctggtgatcgatcctgttgtcccatggtgtgagcatcgtagaggaaggaagcctgatgagttaattgagaaggaacgaaaagggaggcagcacgcaatgtcgcttagaagtatgctgccaggcatggacggtggaaactcttctagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

366

Amino Acids

41.41

Weight (kDa)

5.25

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	475
AciI	CCGC	3 cut(s)	113, 448, 845
AclWI	GGATC	2 cut(s)	410, 953
AcsI	RAATTY	3 cut(s)	148, 767, 820
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	42, 278, 603
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	485, 542, 610, 787, 829
AjnI	CCWGG	3 cut(s)	708, 762, 1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	6 cut(s)	12, 292, 330, 673, 793, 833
AluI	AGCT	6 cut(s)	12, 292, 330, 673, 793, 833
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	2 cut(s)	410, 953
AlwNI	CAGNNNCTG	2 cut(s)	557, 902
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	7 cut(s)	12, 327, 790, 896, 932, 1036, 1063
ApoI	RAATTY	3 cut(s)	148, 767, 820
AseI	ATTAAT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	1087
AspS9I	GGNCC	3 cut(s)	156, 194, 712
AsuHPI	GGTGA	2 cut(s)	121, 964
AvaII	GGWCC	2 cut(s)	156, 712
BbsI	GAAGAC	1 cut(s)	703
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	6 cut(s)	339, 802, 908, 919, 1048, 1050
BccI	CCATC	1 cut(s)	849
BciT130I	CCWGG	3 cut(s)	710, 764, 1068
BciVI	GTATCC	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	3 cut(s)	734, 941, 1092
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	8 cut(s)	13, 114, 328, 791, 897, 933, 1037, 1064
BlsI	GCNGC	8 cut(s)	14, 115, 329, 792, 898, 934, 1038, 1065
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	3 cut(s)	710, 764, 1068
Bme18I	GGWCC	2 cut(s)	156, 712
BmgT120I	GGNCC	3 cut(s)	156, 194, 712
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	710, 764, 1068
BmsI	GCATC	4 cut(s)	100, 572, 588, 991
BpiI	GAAGAC	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	662
Bsa29I	ATCGAT	1 cut(s)	957
BsaJI	CCNNGG	2 cut(s)	748, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	1050
BseBI	CCWGG	3 cut(s)	710, 764, 1068
BseCI	ATCGAT	1 cut(s)	957
BseDI	CCNNGG	2 cut(s)	748, 971
BseGI	GGATG	2 cut(s)	115, 841
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	4 cut(s)	114, 683, 735, 825
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	6 cut(s)	339, 802, 908, 919, 1048, 1050
BseYI	CCCAGC	3 cut(s)	252, 892, 935
BshFI	GGCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	957
BslFI	GGGAC	4 cut(s)	298, 448, 730, 953
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	4 cut(s)	298, 448, 730, 953
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	3 cut(s)	113, 448, 845
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	4 cut(s)	113, 682, 734, 826
BspDI	ATCGAT	1 cut(s)	957
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	410, 953
BsrDI	GCAATG	1 cut(s)	1050
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	748, 971
BssMI	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
BssT1I	CCWWGG	2 cut(s)	748, 971
Bst2UI	CCWGG	3 cut(s)	710, 764, 1068
Bst4CI	ACNGT	2 cut(s)	45, 1079
Bst6I	CTCTTC	1 cut(s)	1093
BstC8I	GCNNGC	4 cut(s)	675, 795, 799, 1041
BstDEI	CTNAG	7 cut(s)	100, 444, 616, 669, 721, 834, 1052
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	2 cut(s)	115, 841
BstKTI	GATC	6 cut(s)	393, 418, 496, 657, 957, 961
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	3 cut(s)	710, 764, 1068
BstSCI	CCNGG	3 cut(s)	708, 762, 1066
BstV1I	GCAGC	6 cut(s)	339, 802, 908, 919, 1048, 1050
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
Bsu15I	ATCGAT	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	195
BsuTUI	ATCGAT	1 cut(s)	957
BtgI	CCRYGG	1 cut(s)	971
BtsCI	GGATG	2 cut(s)	115, 841
BtsIMutI	CAGTG	1 cut(s)	558
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	4 cut(s)	675, 795, 799, 1041
CaiI	CAGNNNCTG	2 cut(s)	557, 902
Cfr13I	GGNCC	3 cut(s)	156, 194, 712
ClaI	ATCGAT	1 cut(s)	957
Csp6I	GTAC	3 cut(s)	41, 277, 602
CviAII	CATG	3 cut(s)	141, 972, 1072
CviQI	GTAC	3 cut(s)	41, 277, 602
DdeI	CTNAG	7 cut(s)	100, 444, 616, 669, 721, 834, 1052
DpnI	GATC	6 cut(s)	392, 417, 495, 656, 956, 960
DpnII	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	1093
EarI	CTCTTC	1 cut(s)	1093
Eco130I	CCWWGG	2 cut(s)	748, 971
Eco47I	GGWCC	2 cut(s)	156, 712
Eco57I	CTGAAG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	3 cut(s)	708, 762, 1066
EcoT14I	CCWWGG	2 cut(s)	748, 971
ErhI	CCWWGG	2 cut(s)	748, 971
FaeI	CATG	3 cut(s)	144, 975, 1075
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	4 cut(s)	298, 448, 730, 953
FatI	CATG	3 cut(s)	140, 971, 1071
Fnu4HI	GCNGC	8 cut(s)	13, 114, 328, 791, 897, 933, 1037, 1064
FokI	GGATG	2 cut(s)	122, 828
Fsp4HI	GCNGC	8 cut(s)	13, 114, 328, 791, 897, 933, 1037, 1064
FspBI	CTAG	3 cut(s)	734, 941, 1092
GluI	GCNGC	8 cut(s)	13, 114, 328, 791, 897, 933, 1037, 1064
GsaI	CCCAGC	3 cut(s)	256, 896, 939
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	144, 975, 1075
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	461, 637, 879
HphI	GGTGA	2 cut(s)	121, 964
Hpy166II	GTNNAC	3 cut(s)	156, 184, 925
Hpy188I	TCNGA	7 cut(s)	29, 58, 174, 260, 498, 584, 626
Hpy188III	TCNNGA	2 cut(s)	368, 641
Hpy8I	GTNNAC	3 cut(s)	156, 184, 925
HpyAV	CCTTC	5 cut(s)	429, 688, 793, 987, 1012
HpyCH4III	ACNGT	2 cut(s)	45, 1079
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	3 cut(s)	15, 135, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	7 cut(s)	100, 444, 616, 669, 721, 834, 1052
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	144, 975, 1075
Kzo9I	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
Lsp1109I	GCAGC	6 cut(s)	339, 802, 908, 919, 1048, 1050
LweI	GCATC	4 cut(s)	100, 572, 588, 991
MaeI	CTAG	3 cut(s)	734, 941, 1092
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	90, 553, 910
MalI	GATC	6 cut(s)	392, 417, 495, 656, 956, 960
MboI	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
MboII	GAAGA	6 cut(s)	235, 301, 304, 588, 708, 1080
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	6 cut(s)	148, 342, 628, 767, 820, 1011
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	7, 614
MroXI	GAANNNNTTC	1 cut(s)	1087
MseI	TTAA	6 cut(s)	119, 381, 572, 773, 857, 1010
MslI	CAYNNNNRTG	1 cut(s)	584
MspR9I	CCNGG	3 cut(s)	710, 764, 1068
MvaI	CCWGG	3 cut(s)	710, 764, 1068
MwoI	GCNNNNNNNGC	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
NlaIII	CATG	3 cut(s)	144, 975, 1075
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	3 cut(s)	90, 553, 910
PaqCI	CACCTGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	1087
PfeI	GAWTC	2 cut(s)	637, 879
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	8 cut(s)	14, 115, 329, 792, 898, 934, 1038, 1065
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	119
Psp6I	CCWGG	3 cut(s)	708, 762, 1066
PspFI	CCCAGC	3 cut(s)	252, 892, 935
PspGI	CCWGG	3 cut(s)	708, 762, 1066
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	3 cut(s)	156, 194, 712
PstNI	CAGNNNCTG	2 cut(s)	557, 902
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	3 cut(s)	42, 278, 603
RsaNI	GTAC	3 cut(s)	41, 277, 602
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	6 cut(s)	119, 381, 572, 773, 857, 1010
SatI	GCNGC	8 cut(s)	13, 114, 328, 791, 897, 933, 1037, 1064
Sau3AI	GATC	6 cut(s)	390, 415, 493, 654, 954, 958
Sau96I	GGNCC	3 cut(s)	156, 194, 712
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	3 cut(s)	710, 764, 1068
SfaNI	GCATC	4 cut(s)	100, 572, 588, 991
SinI	GGWCC	2 cut(s)	156, 712
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	6 cut(s)	148, 342, 628, 767, 820, 1011
SsiI	CCGC	3 cut(s)	113, 448, 845
SspMI	CTAG	3 cut(s)	734, 941, 1092
StyD4I	CCNGG	3 cut(s)	708, 762, 1066
StyI	CCWWGG	2 cut(s)	748, 971
TaaI	ACNGT	2 cut(s)	45, 1079
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	5 cut(s)	47, 315, 369, 532, 957
TasI	AATT	6 cut(s)	148, 342, 628, 767, 820, 1011
TatI	WGTACW	2 cut(s)	40, 276
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	637, 879
Tru1I	TTAA	6 cut(s)	119, 381, 572, 773, 857, 1010
Tru9I	TTAA	6 cut(s)	119, 381, 572, 773, 857, 1010
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	3 cut(s)	90, 553, 910
TseI	GCWGC	7 cut(s)	12, 327, 790, 896, 932, 1036, 1063
Tsp45I	GTSAC	3 cut(s)	90, 553, 910
TspDTI	ATGAA	1 cut(s)	907
TspRI	CASTG	1 cut(s)	558
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	156, 712
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	3 cut(s)	148, 767, 820
XmnI	GAANNNNTTC	1 cut(s)	1087
XspI	CTAG	3 cut(s)	734, 941, 1092
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.