Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Reverse (-)

6097326 .. 6100288

Gene Structure 2963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTTTTGCCCCTGACCCGGGCTATCAGGCCCTCAGCAAAGGCTTGGACATTATACAACAGCCATCTGAAGCCGAAGCCGGGCATCAGGAGTCTTTGGAGAAACGTATTGCTGAAGAATGGATGCCTTCTTCACGGAACATGACATATATGCTTGCGCAGTTCAAGCAGAAGGTTTCTATGCTTGATAACTCTGGGAAGCCAGTCCTTGCATCAACTGACAGTTCAAACCCCTGGTGCGCCCTGCTAGAAGAAGTGGTCAGTAAAGCTTACGGAACACTTGGTAAGCCTGAGATTTGTCCTGCTTCAACAGATGCTCACTATTTCCAGCTACAAGGCTTGCCAGCAATTGGATTCTCTCCTATGGCCAACACTCATTTTCTGCTCCATGACCATAACGAGGTCGTGGCTGTTGGAAGATTCCAAAATGGTGGTGCATTCAACGTTATTCCAGATTCTGCTGAACAAAGGGTTGAAGAGGTTGAACATGTCGTAAGGGAAGAGAAGTTGAGGGAAGCATATGAGCTTATCGAGATATATTGCGAACTTATTGCAGCACGATTGCCAATGTTTGAGTCGCAGAAGAACTGCCTAATTGATCTGGAGGAAGCAGTATCAAGTGTAATTTTTGCGAGGGGACCTACTAATGTCCAAGTTCCTCCTAATAGTAGCATGGCCAATAAAGCTCATGTGGAAGCTCCCCTGGTCCGCTTCCACCTGATAAGCCTCCTAATGCTGAAGTTCCACGCAGAAATTATGAGTTTCAGGATGGACCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

259

Amino Acids

28.84

Weight (kDa)

5.12

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	154 - 212	1.4e-15	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	1 cut(s)	709
AclI	AACGTT	1 cut(s)	444
AcoI	YGGCCR	2 cut(s)	366, 675
AcuI	CTGAAG	3 cut(s)	90, 135, 758
AfiI	CCNNNNNNNGG	5 cut(s)	19, 20, 81, 350, 400
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	6 cut(s)	166, 228, 309, 442, 476, 485
AjnI	CCWGG	2 cut(s)	233, 702
AluBI	AGCT	5 cut(s)	269, 331, 526, 686, 698
AluI	AGCT	5 cut(s)	269, 331, 526, 686, 698
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	3 cut(s)	30, 366, 675
ApeKI	GCWGC	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	160, 242
AspS9I	GGNCC	4 cut(s)	31, 638, 706, 772
AsuC2I	CCSGG	3 cut(s)	20, 21, 82
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	3 cut(s)	638, 706, 772
BalI	TGGCCA	2 cut(s)	368, 677
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	2 cut(s)	73, 763
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	235, 704
BcnI	CCSGG	3 cut(s)	20, 21, 82
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	5 cut(s)	20, 21, 82, 235, 704
Bme18I	GGWCC	3 cut(s)	638, 706, 772
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	31, 638, 706, 772
BmiI	GGNNCC	2 cut(s)	639, 774
BmrFI	CCNGG	5 cut(s)	20, 21, 82, 235, 704
BmsI	GCATC	4 cut(s)	94, 114, 221, 304
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	20, 21, 82
BsaJI	CCNNGG	3 cut(s)	19, 233, 702
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 20, 81, 350, 400
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	235, 704
BseDI	CCNNGG	3 cut(s)	19, 233, 702
BseGI	GGATG	2 cut(s)	129, 774
BseLI	CCNNNNNNNGG	5 cut(s)	19, 20, 81, 350, 400
BseMII	CTCAG	2 cut(s)	49, 282
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	566
BshFI	GGCC	3 cut(s)	32, 368, 677
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	20, 81
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	5 cut(s)	19, 20, 81, 350, 400
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	32, 368, 677
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	3 cut(s)	32, 368, 677
BspCNI	CTCAG	2 cut(s)	48, 283
BspLI	GGNNCC	2 cut(s)	639, 774
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	19, 233, 702
BssMI	GATC	1 cut(s)	598
Bst2UI	CCWGG	2 cut(s)	235, 704
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	471, 495
BstC8I	GCNNGC	3 cut(s)	156, 341, 345
BstDEI	CTNAG	2 cut(s)	35, 291
BstF5I	GGATG	2 cut(s)	129, 774
BstHHI	GCGC	2 cut(s)	160, 242
BstKTI	GATC	1 cut(s)	601
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 683
BstNI	CCWGG	2 cut(s)	235, 704
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	5 cut(s)	18, 19, 80, 233, 702
BstV1I	GCAGC	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	431
BsuRI	GGCC	3 cut(s)	32, 368, 677
BtsCI	GGATG	2 cut(s)	129, 774
Cac8I	GCNNGC	3 cut(s)	156, 341, 345
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	2 cut(s)	160, 242
Cfr13I	GGNCC	4 cut(s)	31, 638, 706, 772
Cfr9I	CCCGGG	1 cut(s)	19
CviAII	CATG	5 cut(s)	142, 389, 488, 673, 689
DdeI	CTNAG	2 cut(s)	35, 291
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
EaeI	YGGCCR	2 cut(s)	366, 675
Eam1104I	CTCTTC	2 cut(s)	471, 495
EarI	CTCTTC	2 cut(s)	471, 495
Eco47I	GGWCC	3 cut(s)	638, 706, 772
Eco57I	CTGAAG	3 cut(s)	90, 135, 758
Eco88I	CYCGRG	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	31, 638
EcoRII	CCWGG	2 cut(s)	233, 702
FaeI	CATG	5 cut(s)	145, 392, 491, 676, 692
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	5 cut(s)	141, 388, 487, 672, 688
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	248
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	2 cut(s)	159, 241
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	32, 368, 677
HapII	CCGG	2 cut(s)	20, 81
HhaI	GCGC	2 cut(s)	160, 242
Hin1II	CATG	5 cut(s)	145, 392, 491, 676, 692
Hin6I	GCGC	2 cut(s)	158, 240
HinP1I	GCGC	2 cut(s)	158, 240
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	92, 354, 420, 455, 575
HpaII	CCGG	2 cut(s)	20, 81
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	5 cut(s)	89, 452, 532, 602, 766
HpyAV	CCTTC	2 cut(s)	138, 166
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	106, 444
HpyCH4V	TGCA	3 cut(s)	212, 437, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 683
HpyF3I	CTNAG	2 cut(s)	35, 291
HpySE526I	ACGT	2 cut(s)	106, 444
Hsp92II	CATG	5 cut(s)	145, 392, 491, 676, 692
HspAI	GCGC	2 cut(s)	158, 240
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	2 cut(s)	390, 703
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	4 cut(s)	94, 114, 221, 304
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	106, 444
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	7 cut(s)	123, 128, 263, 429, 488, 512, 595
MfeI	CAATTG	1 cut(s)	348
MlsI	TGGCCA	2 cut(s)	368, 677
MluCI	AATT	4 cut(s)	348, 594, 624, 753
MluNI	TGGCCA	2 cut(s)	368, 677
MlyI	GAGTC	2 cut(s)	101, 584
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	44, 394, 472, 504, 598, 627, 669, 737
Mox20I	TGGCCA	2 cut(s)	368, 677
MscI	TGGCCA	2 cut(s)	368, 677
Msp20I	TGGCCA	2 cut(s)	368, 677
MspI	CCGG	2 cut(s)	20, 81
MspR9I	CCNGG	5 cut(s)	20, 21, 82, 235, 704
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	235, 704
MwoI	GCNNNNNNNGC	2 cut(s)	166, 683
NciI	CCSGG	3 cut(s)	20, 21, 82
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	5 cut(s)	145, 392, 491, 676, 692
NlaIV	GGNNCC	2 cut(s)	639, 774
NsbI	TGCGCA	1 cut(s)	159
NspI	RCATGY	1 cut(s)	491
PciI	ACATGT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	354, 420, 455
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	2 cut(s)	100, 583
PpsI	GAGTC	2 cut(s)	100, 583
PpuMI	RGGWCCY	1 cut(s)	638
PscI	ACATGT	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	233, 702
PspGI	CCWGG	2 cut(s)	233, 702
PspN4I	GGNNCC	2 cut(s)	639, 774
PspPI	GGNCC	4 cut(s)	31, 638, 706, 772
PspPPI	RGGWCCY	1 cut(s)	638
PstNI	CAGNNNCTG	1 cut(s)	458
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	4 cut(s)	31, 638, 706, 772
SchI	GAGTC	2 cut(s)	101, 584
ScrFI	CCNGG	5 cut(s)	20, 21, 82, 235, 704
SfaNI	GCATC	4 cut(s)	94, 114, 221, 304
SinI	GGWCC	3 cut(s)	638, 706, 772
SmaI	CCCGGG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	348, 594, 624, 753
SsiI	CCGC	1 cut(s)	709
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	5 cut(s)	18, 19, 80, 233, 702
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	2 cut(s)	109, 447
TaqI	TCGA	1 cut(s)	531
TasI	AATT	4 cut(s)	348, 594, 624, 753
TfiI	GAWTC	3 cut(s)	354, 420, 455
TseI	GCWGC	1 cut(s)	554
TspGWI	ACGGA	2 cut(s)	151, 288
TspMI	CCCGGG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	3 cut(s)	638, 706, 772
XceI	RCATGY	1 cut(s)	491
XmaI	CCCGGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.