Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Reverse (-)

6282817 .. 6283272

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG075000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATAATTACAAGGGGCAAGAATCAAGTTTGTTTTTTTTCTTCTCCTGCTAGAAATTCATTTCCTTCAGCTAGTTTAGATCCTTGGAGTTTTGAGCAAAAGAGAGATGAGGTACCATTCAAGTCCGTTTCACCATTACGTTCTTCATCAGTGCAGCACTCCCTCCCCATCTTTTCTGAAGGTTTGACAGGTTCTACAGTCCCTTCGGAACCAAATGACTTCGTGCCTGTTACTTTTGATGCTTCAGATGGCCCAAGTTCAGACAGTGAGGAGGAGTTGGACACGTCTATGCTTGTCCTGAGCAAAGATTCTAAATTTTCTCATGAGAAGACTGTTCAATCCATAAATTCGGGAAAAAGCCAGAGTGCAAGCCACAGGTCATTAGCATCTTCATCCTCTGATGAGGTACATCCCGAGAGAACCCAGGGAATTGAATATAGTGTTATTCTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

151

Amino Acids

16.44

Weight (kDa)

5.0

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	112
AccB1I	GGYRCC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	3 cut(s)	55, 314, 346
AcuI	CTGAAG	3 cut(s)	51, 198, 228
AfaI	GTAC	2 cut(s)	114, 408
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	121, 338, 434
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	3 cut(s)	55, 314, 346
Asp718I	GGTACC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	176, 242
BciT130I	CCWGG	1 cut(s)	425
BfaI	CTAG	2 cut(s)	51, 72
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	114, 210
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	229, 395
BpiI	GAAGAC	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	83, 423, 424
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	3 cut(s)	83, 423, 424
BseGI	GGATG	2 cut(s)	392, 409
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	284, 287
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	114, 210
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	83, 423, 424
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	199, 266, 334
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	392, 409
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	392, 409
BtsIMutI	CAGTG	2 cut(s)	156, 271
Cac8I	GCNNGC	1 cut(s)	370
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	113, 407
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	4 cut(s)	71, 252, 360, 372
CviKI_1	RGCY	4 cut(s)	71, 252, 360, 372
CviQI	GTAC	2 cut(s)	113, 407
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	83
Eco57I	CTGAAG	3 cut(s)	51, 198, 228
Eco88I	CYCGRG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	1 cut(s)	326
FaiI	YATR	5 cut(s)	290, 324, 344, 438, 454
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	2 cut(s)	379, 396
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	2 cut(s)	51, 72
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	2 cut(s)	22, 308
HphI	GGTGA	1 cut(s)	123
Hpy188I	TCNGA	5 cut(s)	178, 208, 247, 262, 400
Hpy188III	TCNNGA	4 cut(s)	298, 323, 351, 413
HpyAV	CCTTC	3 cut(s)	75, 173, 213
HpyCH4III	ACNGT	3 cut(s)	199, 266, 334
HpyCH4IV	ACGT	2 cut(s)	139, 284
HpyCH4V	TGCA	2 cut(s)	154, 368
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	2 cut(s)	139, 284
Hsp92II	CATG	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	60, 174, 240, 311, 361, 374, 410, 437
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	229, 395
MaeI	CTAG	2 cut(s)	51, 72
MaeII	ACGT	2 cut(s)	139, 284
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	33, 135, 340, 381
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	5 cut(s)	6, 55, 314, 346, 429
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	103, 173, 262, 265, 397, 406
MslI	CAYNNNNRTG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	114, 210
PagI	TCATGA	1 cut(s)	322
PasI	CCCWGGG	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	22, 308
PkrI	GCNGC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	114, 210
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	2 cut(s)	114, 408
RsaNI	GTAC	2 cut(s)	113, 407
RseI	CAYNNNNRTG	1 cut(s)	287
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	8 cut(s)	73, 114, 142, 184, 193, 287, 380, 408
SfaNI	GCATC	2 cut(s)	229, 395
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	6, 55, 314, 346, 429
SspMI	CTAG	2 cut(s)	51, 72
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	199, 266, 334
TaiI	ACGT	2 cut(s)	142, 287
TasI	AATT	5 cut(s)	6, 55, 314, 346, 429
TfiI	GAWTC	2 cut(s)	22, 308
TscAI	CASTG	2 cut(s)	156, 271
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	48, 135, 381
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	156, 271
XapI	RAATTY	3 cut(s)	55, 314, 346
XspI	CTAG	2 cut(s)	51, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.