Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8093496.1

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 401

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8093496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

atggatatccacaagcatttcacagcaaaatatggaaaggagttcgtctctgcagctgttgaactgcgcccagatggtggtgtaagccgcatggtaatagaaaaattatccaccaaatcacctgatgtcaaatgggatcccgaggcatttgaagagaagcctgctgaggacctgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

59

Amino Acids

6.67

Weight (kDa)

5.23

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	77
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	2 cut(s)	131, 144
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	62, 152
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	131, 144
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	111
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	54, 88
BlsI	GCNGC	2 cut(s)	55, 89
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	2 cut(s)	131, 144
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	3 cut(s)	56, 87, 160
CviKI_1	RGCY	3 cut(s)	56, 87, 160
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	33, 92
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	54, 88
Fsp4HI	GCNGC	2 cut(s)	54, 88
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	54, 88
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	84, 135
Lsp1109I	GCAGC	1 cut(s)	65
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	2 cut(s)	136, 160
MspA1I	CMGCKG	1 cut(s)	56
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	55, 89
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	56
SatI	GCNGC	2 cut(s)	54, 88
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	3 cut(s)	58, 124, 174
SfcI	CTRYAG	1 cut(s)	51
SgeI	CNNG	7 cut(s)	25, 83, 103, 134, 152, 154, 173
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	88
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.