Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Forward (+)

86520834 .. 86522952

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAATTCTGAGGGAAATGCTCCTCTGGTTTTTGATGATTCTGCTGATGAAAATTTGGCTGCAATTGCAGAGGAACATACTGTCAAATGGGATCCCGAGGCATTTGAAGAGAAGTCTCCTGAGGACCTGCTGAACGGACCAAATACGTTTGGAATGGCCAGTATGGATTCTGCTCCACCTCCACCTACTCATGATGTCAGGGGACCTCCTAATGTCCAAGTTCCGCCTAATAGCATGGCCAGTAAAGCTCATGTGGAACCTCCCTCTGGTCCACCTCCACCTGATCAACCTCCGATTGCTCAAGTTCCACGCAGAAATTATGAGAATCATGATGGACCTAAGAATTCTAATGAGCAGAATGCAAGATCATCACCTCACTTGGAGGATTCTGCTTCTACAAATGTTTCCAACAAAGCAACCACATCTGCCAAATTTCATCCAGAAACGACATCTTCAGAAACCAGAAGCGATCGAATGGAAATGCATGTATTTCCTGGGGATGAAAGTTCTTCGGGCAGGCAGAATTGGAATATGCAATTTAAGGATGCTGCATCTGCAGCACAGGCAGCTGCTGAATCAGCAGAACTAGCAGGCATGGCAGCCAGAGCAGCTGTAGAACTCTCAGGGCAATATTCATCTGAAATGCGCAATAAAAGTAATCAGTCAGCCTCTGTGCCAACTAATTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

230

Amino Acids

24.55

Weight (kDa)

4.72

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	135
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	86, 99
AcoI	YGGCCR	2 cut(s)	156, 237
AcsI	RAATTY	4 cut(s)	4, 52, 343, 431
AcuI	CTGAAG	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	107, 687
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	3 cut(s)	248, 569, 611
AluI	AGCT	3 cut(s)	248, 569, 611
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	86, 99
AlwNI	CAGNNNCTG	2 cut(s)	572, 671
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	156, 237
ApeKI	GCWGC	7 cut(s)	59, 548, 557, 566, 569, 599, 608
ApoI	RAATTY	4 cut(s)	4, 52, 343, 431
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	5 cut(s)	124, 137, 203, 269, 335
AsuHPI	GGTGA	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	5 cut(s)	124, 137, 203, 269, 335
AxyI	CCTNAGG	1 cut(s)	120
BalI	TGGCCA	2 cut(s)	158, 239
BamHI	GGATCC	1 cut(s)	91
BbvI	GCAGC	7 cut(s)	46, 535, 556, 569, 578, 611, 620
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	495
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	2 cut(s)	555, 612
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	7 cut(s)	60, 549, 558, 567, 570, 600, 609
BlsI	GCNGC	7 cut(s)	61, 550, 559, 568, 571, 601, 610
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	5 cut(s)	124, 137, 203, 269, 335
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	5 cut(s)	124, 137, 203, 269, 335
BmiI	GGNNCC	3 cut(s)	93, 204, 258
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	535, 560
BpuEI	CTTGAG	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	96, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	159, 240
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	96, 494
BseGI	GGATG	3 cut(s)	436, 505, 550
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	111, 636
BseNI	ACTGG	2 cut(s)	159, 240
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	7 cut(s)	46, 535, 556, 569, 578, 611, 620
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	158, 239
BsiEI	CGRYCG	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	158, 239
BsoBI	CYCGRG	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	91, 283, 365, 469
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	158, 239
BspCNI	CTCAG	2 cut(s)	112, 635
BspHI	TCATGA	2 cut(s)	190, 328
BspLI	GGNNCC	3 cut(s)	93, 204, 258
BspMAI	CTGCAG	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	86, 99
BsrI	ACTGG	2 cut(s)	159, 240
BssECI	CCNNGG	2 cut(s)	96, 494
BssMI	GATC	4 cut(s)	91, 283, 365, 469
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	518, 592
BstDEI	CTNAG	4 cut(s)	9, 120, 339, 622
BstF5I	GGATG	3 cut(s)	436, 505, 550
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	4 cut(s)	94, 286, 368, 472
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	4 cut(s)	91, 283, 365, 469
BstMCI	CGRYCG	1 cut(s)	472
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	2 cut(s)	555, 612
BstV1I	GCAGC	7 cut(s)	46, 535, 556, 569, 578, 611, 620
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	158, 239
BtsCI	GGATG	3 cut(s)	436, 505, 550
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	518, 592
CaiI	CAGNNNCTG	2 cut(s)	572, 671
CciI	TCATGA	2 cut(s)	190, 328
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	5 cut(s)	124, 137, 203, 269, 335
CviAII	CATG	6 cut(s)	191, 235, 251, 329, 485, 595
CviJI	RGCY	8 cut(s)	59, 158, 239, 248, 569, 602, 611, 668
CviKI_1	RGCY	8 cut(s)	59, 158, 239, 248, 569, 602, 611, 668
DdeI	CTNAG	4 cut(s)	9, 120, 339, 622
DpnI	GATC	4 cut(s)	93, 285, 367, 471
DpnII	GATC	4 cut(s)	91, 283, 365, 469
EaeI	YGGCCR	2 cut(s)	156, 237
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	213
Eco47I	GGWCC	5 cut(s)	124, 137, 203, 269, 335
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	124, 203
EcoRI	GAATTC	2 cut(s)	4, 343
EcoRII	CCWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	486
FaeI	CATG	6 cut(s)	194, 238, 254, 332, 488, 598
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	6 cut(s)	190, 234, 250, 328, 484, 594
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	7 cut(s)	60, 549, 558, 567, 570, 600, 609
FokI	GGATG	3 cut(s)	423, 512, 557
Fsp4HI	GCNGC	7 cut(s)	60, 549, 558, 567, 570, 600, 609
FspBI	CTAG	1 cut(s)	587
FspI	TGCGCA	1 cut(s)	647
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	7 cut(s)	60, 549, 558, 567, 570, 600, 609
HaeIII	GGCC	2 cut(s)	158, 239
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	6 cut(s)	194, 238, 254, 332, 488, 598
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HinfI	GANTC	5 cut(s)	38, 167, 325, 386, 575
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	4 cut(s)	10, 294, 457, 640
Hpy188III	TCNNGA	5 cut(s)	95, 119, 191, 329, 440
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	7 cut(s)	62, 68, 362, 484, 535, 551, 557
HpyF3I	CTNAG	4 cut(s)	9, 120, 339, 622
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	6 cut(s)	194, 238, 254, 332, 488, 598
HspAI	GCGC	1 cut(s)	646
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	91, 283, 365, 469
LmnI	GCTCC	2 cut(s)	25, 178
Lsp1109I	GCAGC	7 cut(s)	46, 535, 556, 569, 578, 611, 620
LweI	GCATC	2 cut(s)	535, 560
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	146
MalI	GATC	4 cut(s)	93, 285, 367, 471
MboI	GATC	4 cut(s)	91, 283, 365, 469
MboII	GAAGA	3 cut(s)	119, 444, 501
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	91
MlsI	TGGCCA	2 cut(s)	158, 239
MluCI	AATT	9 cut(s)	4, 52, 63, 316, 343, 431, 523, 536, 682
MluNI	TGGCCA	2 cut(s)	158, 239
MmeI	TCCRAC	1 cut(s)	432
Mox20I	TGGCCA	2 cut(s)	158, 239
Mph1103I	ATGCAT	1 cut(s)	486
MscI	TGGCCA	2 cut(s)	158, 239
MseI	TTAA	1 cut(s)	540
Msp20I	TGGCCA	2 cut(s)	158, 239
MspA1I	CMGCKG	2 cut(s)	569, 611
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	91, 283, 365, 469
NlaIII	CATG	6 cut(s)	194, 238, 254, 332, 488, 598
NlaIV	GGNNCC	3 cut(s)	93, 204, 258
NsbI	TGCGCA	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	488
PagI	TCATGA	2 cut(s)	190, 328
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	5 cut(s)	38, 167, 325, 386, 575
PkrI	GCNGC	7 cut(s)	61, 550, 559, 568, 571, 601, 610
Ple19I	CGATCG	1 cut(s)	472
PpuMI	RGGWCCY	2 cut(s)	124, 203
Psp5II	RGGWCCY	2 cut(s)	124, 203
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	3 cut(s)	93, 204, 258
PspPI	GGNCC	5 cut(s)	124, 137, 203, 269, 335
PspPPI	RGGWCCY	2 cut(s)	124, 203
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	2 cut(s)	572, 671
PsuI	RGATCY	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	472
PvuII	CAGCTG	2 cut(s)	569, 611
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	7 cut(s)	60, 549, 558, 567, 570, 600, 609
Sau3AI	GATC	4 cut(s)	91, 283, 365, 469
Sau96I	GGNCC	5 cut(s)	124, 137, 203, 269, 335
ScrFI	CCNGG	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	535, 560
SfcI	CTRYAG	2 cut(s)	555, 612
SinI	GGWCC	5 cut(s)	124, 137, 203, 269, 335
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	9 cut(s)	4, 52, 63, 316, 343, 431, 523, 536, 682
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	632
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	472
TasI	AATT	9 cut(s)	4, 52, 63, 316, 343, 431, 523, 536, 682
TfiI	GAWTC	5 cut(s)	38, 167, 325, 386, 575
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TseI	GCWGC	7 cut(s)	59, 548, 557, 566, 569, 599, 608
TspDTI	ATGAA	5 cut(s)	17, 63, 425, 516, 624
TspGWI	ACGGA	1 cut(s)	150
VpaK11BI	GGWCC	5 cut(s)	124, 137, 203, 269, 335
XapI	RAATTY	4 cut(s)	4, 52, 343, 431
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.