Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001132.1

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Forward (+)

15328 .. 17292

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001132.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggaatacgaaattggtgcaccaggtaaagcctacactgactggacagctcaaatggttgtgggattaaacactagtttcccctggatcctgtgcaaacaagatgatgcccctgtcctgtttggggttgctactcaatggtgtgtcttcttagatatcgtcatggtagacatgaataatgattcttctttgcacatgttaatagagaaattatctaccaaatcacctgatggccctaccaagatgaaaattttggctgcatttgcagaggaacataatatcaaatgggatcccgagacatttgaagagaagcctcctgaggacctgctggttaaaatgaacggaccaaatacatttggaacggccagtatggattctgctccacctccacctactcatgatgtcaggggacctcctaatgtccaagttccgcctaatagcatggccagtaaagctcatgtccacctgatcaacctccaattgctcaagttccacgcagaaattatgagtatcacgatgacctatgaattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

177

Amino Acids

19.73

Weight (kDa)

4.88

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	4 cut(s)	82, 95, 284, 297
AcoI	YGGCCR	2 cut(s)	363, 444
AcsI	RAATTY	2 cut(s)	249, 527
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	305
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	22, 83
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	50, 455
AluI	AGCT	2 cut(s)	50, 455
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	4 cut(s)	82, 95, 284, 297
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	3 cut(s)	232, 363, 444
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	249, 527
AspS9I	GGNCC	4 cut(s)	233, 322, 344, 410
AsuHPI	GGTGA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	322, 344, 410
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	446
BamHI	GGATCC	2 cut(s)	87, 289
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	378
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	24, 85
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	290
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	333
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	24, 85
Bme18I	GGWCC	3 cut(s)	322, 344, 410
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	4 cut(s)	233, 322, 344, 410
BmiI	GGNNCC	3 cut(s)	89, 291, 411
BmrFI	CCNGG	2 cut(s)	24, 85
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	47, 366, 447
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	24, 85
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	3 cut(s)	47, 366, 447
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	3 cut(s)	234, 365, 446
BsiHKAI	GWGCWC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	234, 365, 446
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	87, 289, 468
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	3 cut(s)	234, 365, 446
BspCNI	CTCAG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	89, 291, 411
BspMI	ACCTGC	1 cut(s)	333
BspPI	GGATC	4 cut(s)	82, 95, 284, 297
BsrI	ACTGG	3 cut(s)	47, 366, 447
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	3 cut(s)	87, 289, 468
Bst2UI	CCWGG	2 cut(s)	24, 85
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	151, 318
BstKTI	GATC	3 cut(s)	90, 292, 471
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	87, 289, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 452
BstNI	CCWGG	2 cut(s)	24, 85
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	22, 83
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	87, 289
BstYI	RGATCY	2 cut(s)	87, 289
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	234, 365, 446
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	4 cut(s)	233, 322, 344, 410
CsiI	ACCWGGT	1 cut(s)	22
CviAII	CATG	6 cut(s)	163, 172, 196, 398, 442, 458
CviJI	RGCY	8 cut(s)	32, 50, 234, 257, 313, 365, 446, 455
CviKI_1	RGCY	8 cut(s)	32, 50, 234, 257, 313, 365, 446, 455
DdeI	CTNAG	2 cut(s)	151, 318
DpnI	GATC	3 cut(s)	89, 291, 470
DpnII	GATC	3 cut(s)	87, 289, 468
EaeI	YGGCCR	2 cut(s)	363, 444
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	322, 344, 410
Eco81I	CCTNAGG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	2 cut(s)	322, 410
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	22, 83
EcoRV	GATATC	1 cut(s)	157
FaeI	CATG	6 cut(s)	166, 175, 199, 401, 445, 461
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	6 cut(s)	162, 171, 195, 397, 441, 457
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	234, 365, 446
Hin1II	CATG	6 cut(s)	166, 175, 199, 401, 445, 461
HinfI	GANTC	2 cut(s)	182, 374
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	3 cut(s)	20, 169, 463
Hpy188III	TCNNGA	4 cut(s)	293, 317, 398, 514
Hpy8I	GTNNAC	3 cut(s)	20, 169, 463
HpyCH4V	TGCA	5 cut(s)	20, 96, 193, 260, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 452
HpyF3I	CTNAG	2 cut(s)	151, 318
Hsp92II	CATG	6 cut(s)	166, 175, 199, 401, 445, 461
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	87, 289, 468
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	1 cut(s)	75
MalI	GATC	3 cut(s)	89, 291, 470
MboI	GATC	3 cut(s)	87, 289, 468
MboII	GAAGA	3 cut(s)	139, 177, 317
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	2 cut(s)	87, 289
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	6 cut(s)	12, 209, 249, 479, 501, 527
MluNI	TGGCCA	1 cut(s)	446
MnlI	CCTC	6 cut(s)	262, 313, 324, 396, 423, 485
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	3 cut(s)	68, 200, 333
Msp20I	TGGCCA	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	24, 85
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	24, 85
MwoI	GCNNNNNNNGC	2 cut(s)	263, 452
NdeII	GATC	3 cut(s)	87, 289, 468
NlaIII	CATG	6 cut(s)	166, 175, 199, 401, 445, 461
NlaIV	GGNNCC	3 cut(s)	89, 291, 411
NspI	RCATGY	1 cut(s)	199
PagI	TCATGA	1 cut(s)	397
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	182, 374
PkrI	GCNGC	1 cut(s)	259
PpuMI	RGGWCCY	2 cut(s)	322, 410
PscI	ACATGT	1 cut(s)	195
Psp5II	RGGWCCY	2 cut(s)	322, 410
Psp6I	CCWGG	2 cut(s)	22, 83
PspGI	CCWGG	2 cut(s)	22, 83
PspN4I	GGNNCC	3 cut(s)	89, 291, 411
PspPI	GGNCC	4 cut(s)	233, 322, 344, 410
PspPPI	RGGWCCY	2 cut(s)	322, 410
PsuI	RGATCY	2 cut(s)	87, 289
SaqAI	TTAA	3 cut(s)	68, 200, 333
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	87, 289, 468
Sau96I	GGNCC	4 cut(s)	233, 322, 344, 410
ScrFI	CCNGG	2 cut(s)	24, 85
SduI	GDGCHC	1 cut(s)	22
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	3 cut(s)	322, 344, 410
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	6 cut(s)	12, 209, 249, 479, 501, 527
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	22, 83
TasI	AATT	6 cut(s)	12, 209, 249, 479, 501, 527
TfiI	GAWTC	2 cut(s)	182, 374
Tru1I	TTAA	3 cut(s)	68, 200, 333
Tru9I	TTAA	3 cut(s)	68, 200, 333
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	188, 260, 353
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	18
VpaK11BI	GGWCC	3 cut(s)	322, 344, 410
XapI	RAATTY	2 cut(s)	249, 527
XceI	RCATGY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.