Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Forward (+)

2330173 .. 2333255

Gene Structure 3083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0029200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGACTGGGGATGTACTGTTTGTAGGAATCGGTGATGATCCTAATCAAGCTGATAAGCAGCAATTGCGAGAGATTTTCAGACAGCTAGGAAAACCGATGTTGAATCAGTGTCCAGGACTCACTTCGCCGGCTTGGGAGACCTACCAAGAATGGGAAGGGGAAAAGATGAAAGCTCGGTTCTATTCAGCAGGAGATTTGCCATCGGATCTGCTGGTAGCTACAGTTTATTTGGAACAAGATGGAGCTGAACTTCTATCGCAATTACCATGTTTGTCGAAATTACATTCCCTTTATTCAGTGGTCTCCTTGGATTTTTCAGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTAGCTTGCATAATGTGGCTTGCCTTCCAGACTGCGAAATTGTTGTATTCAACATTGCCAAAGTAAATGAAATAAAGGTGGAACTTCAGACATCCCAAAAACAATTTTTTCCCACCAACTCTGAGTTGTGGTCATGGGAAACCTTCAGTGAAGACATTTCTTCATGGACAGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATCAGTTGAACATCACTATAGACCCCAATGATTATCTACGGTACACCACCAGTGTCGACATAAGTCCATCTGAATCATTTCTGTGTGGTGGTAAGCATCCAATTATCACCGTGTTGTCAGCTGGGAACGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGTTAGTGTGAATAAATTTTCACTTCTAAGTGTAGCTGTTGGATTGCCTGTTAGTTCTTTGATTTGCATTTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

287

Amino Acids

31.93

Weight (kDa)

4.5

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AclWI	GGATC	3 cut(s)	35, 216, 733
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	2 cut(s)	428, 487
AfaI	GTAC	2 cut(s)	18, 605
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	106, 409, 571
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	9 cut(s)	53, 88, 176, 221, 248, 363, 683, 718, 821
AluI	AGCT	9 cut(s)	53, 88, 176, 221, 248, 363, 683, 718, 821
Alw26I	GTCTC	2 cut(s)	134, 310
AlwI	GGATC	3 cut(s)	35, 216, 733
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	800
Asp700I	GAANNNNTTC	1 cut(s)	639
AsuHPI	GGTGA	4 cut(s)	16, 47, 542, 661
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	3 cut(s)	211, 236, 637
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	134, 310
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	222, 579
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	18
BoxI	GACNNNNGTC	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	134, 310
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	13, 612
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	19, 449, 658
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	471, 735
BseNI	ACTGG	2 cut(s)	13, 612
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	134, 310
BsmFI	GGGAC	1 cut(s)	751
Bso31I	GGTCTC	2 cut(s)	134, 310
Bsp143I	GATC	4 cut(s)	40, 208, 562, 725
BspCNI	CTCAG	2 cut(s)	472, 734
BspPI	GGATC	3 cut(s)	35, 216, 733
BspTNI	GGTCTC	2 cut(s)	134, 310
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	13, 612
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	40, 208, 562, 725
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	5 cut(s)	21, 226, 547, 603, 673
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstC8I	GCNNGC	3 cut(s)	132, 365, 379
BstDEI	CTNAG	5 cut(s)	359, 480, 559, 721, 812
BstF5I	GGATG	3 cut(s)	19, 449, 658
BstKTI	GATC	4 cut(s)	43, 211, 565, 728
BstMAI	GTCTC	2 cut(s)	134, 310
BstMBI	GATC	4 cut(s)	40, 208, 562, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 689
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	3 cut(s)	701, 784, 788
BstPAI	GACNNNNGTC	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	222, 579
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	19, 449, 658
BtsIMutI	CAGTG	4 cut(s)	116, 306, 511, 619
Cac8I	GCNNGC	3 cut(s)	132, 365, 379
Cfr10I	RCCGGY	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	17, 604
CviAII	CATG	6 cut(s)	270, 492, 522, 698, 781, 785
CviQI	GTAC	2 cut(s)	17, 604
DdeI	CTNAG	5 cut(s)	359, 480, 559, 721, 812
DpnI	GATC	4 cut(s)	42, 210, 564, 727
DpnII	GATC	4 cut(s)	40, 208, 562, 725
Eco130I	CCWWGG	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	134, 310
Eco57I	CTGAAG	2 cut(s)	428, 487
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	2 cut(s)	699, 786
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	6 cut(s)	273, 495, 525, 701, 784, 788
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	6 cut(s)	269, 491, 521, 697, 780, 784
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	3 cut(s)	26, 436, 645
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	687
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	6 cut(s)	273, 495, 525, 701, 784, 788
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	6 cut(s)	30, 106, 120, 635, 739, 756
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	4 cut(s)	16, 47, 542, 661
Hpy166II	GTNNAC	3 cut(s)	606, 619, 778
Hpy188I	TCNGA	6 cut(s)	83, 208, 322, 447, 481, 634
Hpy188III	TCNNGA	2 cut(s)	386, 723
Hpy8I	GTNNAC	3 cut(s)	606, 619, 778
HpyAV	CCTTC	3 cut(s)	152, 392, 511
HpyCH4III	ACNGT	5 cut(s)	21, 226, 547, 603, 673
HpyCH4V	TGCA	5 cut(s)	367, 697, 745, 784, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 689
HpyF3I	CTNAG	5 cut(s)	359, 480, 559, 721, 812
Hsp92II	CATG	6 cut(s)	273, 495, 525, 701, 784, 788
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	40, 208, 562, 725
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	4 cut(s)	42, 210, 564, 727
MboI	GATC	4 cut(s)	40, 208, 562, 725
MboII	GAAGA	2 cut(s)	510, 521
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	7 cut(s)	65, 263, 281, 396, 461, 663, 800
MlyI	GAGTC	2 cut(s)	114, 733
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	1 cut(s)	316
Mph1103I	ATGCAT	2 cut(s)	699, 786
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	639
MslI	CAYNNNNRTG	2 cut(s)	643, 789
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	67, 689
NaeI	GCCGGC	1 cut(s)	132
NdeII	GATC	4 cut(s)	40, 208, 562, 725
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	6 cut(s)	273, 495, 525, 701, 784, 788
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	2 cut(s)	699, 786
NspI	RCATGY	3 cut(s)	701, 784, 788
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	4 cut(s)	30, 106, 635, 756
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	114, 733
PpsI	GAGTC	2 cut(s)	114, 733
PshAI	GACNNNNGTC	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	18, 605
RsaNI	GTAC	2 cut(s)	17, 604
RseI	CAYNNNNRTG	2 cut(s)	643, 789
SalI	GTCGAC	1 cut(s)	617
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	40, 208, 562, 725
SchI	GAGTC	2 cut(s)	114, 733
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	2 cut(s)	222, 579
SmiMI	CAYNNNNRTG	2 cut(s)	643, 789
Sse9I	AATT	7 cut(s)	65, 263, 281, 396, 461, 663, 800
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	5 cut(s)	21, 226, 547, 603, 673
TaqI	TCGA	2 cut(s)	278, 618
TasI	AATT	7 cut(s)	65, 263, 281, 396, 461, 663, 800
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	4 cut(s)	30, 106, 635, 756
TscAI	CASTG	4 cut(s)	116, 306, 511, 619
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	185, 441, 510
TspRI	CASTG	4 cut(s)	116, 306, 511, 619
XapI	RAATTY	1 cut(s)	800
XceI	RCATGY	3 cut(s)	701, 784, 788
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	699, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.