Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013137.1

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Reverse (-)

5508 .. 7346

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013137.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgcttcacaggagcttcaagcccgccaaatgcaaaacggcgttgaagcttgccgtttcgagaataaagctgttgaagaataagaaagatgcccaggtgaagcagataaagagggaattggcccaattgctggagagtggtcagtacaggactgcaaggattcgggttgaacatgtggtgagggaagagaagttgagggcagcctatgaacttatcgagatatattgcgaacttgttgcagcacgattgcctatggttgaatcgcagaaaaactgcccaattgatctgaaggaagcagtatcaagtgtaatttttgcatctcctagatgtgcggacgtaccagaactcatggatatccgcaagcacttcacagcaaaatacggaaaggagttcgtctctgcagctgttgaactgcggccggatagtggtgtaagccgcatgttaatagagaaattatctaccaaatcacctgatggccctaccaagatgaaaattttggctgcaattgcagaggaacataatgtcaaatgggatcccgaggcatttgaagagaagcctcctgaggacctgctgaatggaccaaatacgtttggaatggccatgcctttatctgcggcaccgtgccccttgttggggacttctaaccttgcaggcacatttgcagctggtatatgtgatctcgtcacttttacgatatcagtaaacgtatcaggcatcgaatctgctacattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

244

Amino Acids

26.94

Weight (kDa)

8.82

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	616
AccB7I	CCANNNNNTGG	1 cut(s)	130
AciI	CCGC	6 cut(s)	24, 332, 358, 415, 436, 614
AclWI	GGATC	2 cut(s)	527, 540
AcoI	YGGCCR	2 cut(s)	416, 597
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	146, 339
AfiI	CCNNNNNNNGG	5 cut(s)	130, 425, 631, 632, 633
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	7 cut(s)	19, 46, 76, 170, 260, 410, 548
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	5 cut(s)	15, 49, 70, 404, 665
AluI	AGCT	5 cut(s)	15, 49, 70, 404, 665
Alw26I	GTCTC	1 cut(s)	400
AlwI	GGATC	2 cut(s)	527, 540
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	4 cut(s)	120, 416, 475, 597
ApeKI	GCWGC	5 cut(s)	200, 239, 401, 500, 662
ApoI	RAATTY	1 cut(s)	492
AspS9I	GGNCC	4 cut(s)	121, 476, 565, 578
AsuHPI	GGTGA	3 cut(s)	109, 190, 459
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	565, 578
AxyI	CCTNAGG	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	616
BbvI	GCAGC	5 cut(s)	212, 251, 413, 487, 674
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	38, 54
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	576
BisI	GCNGC	8 cut(s)	201, 240, 402, 416, 436, 501, 615, 663
BlsI	GCNGC	8 cut(s)	202, 241, 403, 417, 437, 502, 616, 664
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	2 cut(s)	565, 578
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	4 cut(s)	121, 476, 565, 578
BmiI	GGNNCC	2 cut(s)	534, 618
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	79, 326, 723
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	93, 537
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 425, 631, 632, 633
Bse21I	CCTNAGG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	93, 537
BseLI	CCNNNNNNNGG	5 cut(s)	130, 425, 631, 632, 633
BseMII	CTCAG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	626
BseX3I	CGGCCG	1 cut(s)	416
BseXI	GCAGC	5 cut(s)	212, 251, 413, 487, 674
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	4 cut(s)	122, 418, 477, 599
BshNI	GGYRCC	1 cut(s)	616
BsiEI	CGRYCG	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	5 cut(s)	130, 425, 631, 632, 633
BsmAI	GTCTC	1 cut(s)	400
BsmBI	CGTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	4 cut(s)	122, 418, 477, 599
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	283, 532, 676
BspACI	CCGC	6 cut(s)	24, 332, 358, 415, 436, 614
BspANI	GGCC	4 cut(s)	122, 418, 477, 599
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	534, 618
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	527, 540
BspT107I	GGYRCC	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	93, 537
BssMI	GATC	3 cut(s)	283, 532, 676
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	2 cut(s)	180, 543
BstC8I	GCNNGC	4 cut(s)	24, 51, 362, 652
BstDEI	CTNAG	1 cut(s)	561
BstKTI	GATC	3 cut(s)	286, 535, 679
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	3 cut(s)	283, 532, 676
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	176, 442
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	626
BstV1I	GCAGC	5 cut(s)	212, 251, 413, 487, 674
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BstZI	CGGCCG	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	4 cut(s)	122, 418, 477, 599
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	4 cut(s)	24, 51, 362, 652
Cfr13I	GGNCC	4 cut(s)	121, 476, 565, 578
Csp6I	GTAC	2 cut(s)	145, 338
CviAII	CATG	4 cut(s)	173, 349, 439, 601
CviQI	GTAC	2 cut(s)	145, 338
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	285, 534, 678
DpnII	GATC	3 cut(s)	283, 532, 676
EaeI	YGGCCR	2 cut(s)	416, 597
EagI	CGGCCG	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	180, 543
EarI	CTCTTC	2 cut(s)	180, 543
EclXI	CGGCCG	1 cut(s)	416
Eco32I	GATATC	2 cut(s)	355, 696
Eco47I	GGWCC	2 cut(s)	565, 578
Eco52I	CGGCCG	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	93
EcoRV	GATATC	2 cut(s)	355, 696
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	4 cut(s)	176, 352, 442, 604
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	4 cut(s)	172, 348, 438, 600
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	8 cut(s)	201, 240, 402, 416, 436, 501, 615, 663
Fsp4HI	GCNGC	8 cut(s)	201, 240, 402, 416, 436, 501, 615, 663
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	8 cut(s)	201, 240, 402, 416, 436, 501, 615, 663
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	122, 418, 477, 599
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	4 cut(s)	176, 352, 442, 604
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	160, 260, 719
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	3 cut(s)	109, 190, 459
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	2 cut(s)	288, 734
Hpy188III	TCNNGA	4 cut(s)	60, 217, 536, 560
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	3 cut(s)	336, 587, 705
HpyCH4V	TGCA	9 cut(s)	33, 155, 239, 317, 401, 503, 509, 650, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	3 cut(s)	336, 587, 705
Hsp92II	CATG	4 cut(s)	176, 352, 442, 604
Kzo9I	GATC	3 cut(s)	283, 532, 676
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	5 cut(s)	212, 251, 413, 487, 674
LweI	GCATC	3 cut(s)	79, 326, 723
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	3 cut(s)	336, 587, 705
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	3 cut(s)	285, 534, 678
MboI	GATC	3 cut(s)	283, 532, 676
MboII	GAAGA	3 cut(s)	88, 197, 560
MfeI	CAATTG	3 cut(s)	125, 279, 504
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	626
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	7 cut(s)	116, 125, 279, 309, 452, 492, 504
MluNI	TGGCCA	1 cut(s)	599
MnlI	CCTC	7 cut(s)	105, 174, 189, 505, 532, 556, 567
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	599
MspA1I	CMGCKG	2 cut(s)	404, 665
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	3 cut(s)	125, 279, 504
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	3 cut(s)	283, 532, 676
NlaIII	CATG	4 cut(s)	176, 352, 442, 604
NlaIV	GGNNCC	2 cut(s)	534, 618
NmuCI	GTSAC	1 cut(s)	682
NspI	RCATGY	2 cut(s)	176, 442
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	160, 260, 719
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	8 cut(s)	202, 241, 403, 417, 437, 502, 616, 664
PpuMI	RGGWCCY	1 cut(s)	565
PscI	ACATGT	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	534, 618
PspPI	GGNCC	4 cut(s)	121, 476, 565, 578
PspPPI	RGGWCCY	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	2 cut(s)	404, 665
RsaI	GTAC	2 cut(s)	146, 339
RsaNI	GTAC	2 cut(s)	145, 338
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	8 cut(s)	201, 240, 402, 416, 436, 501, 615, 663
Sau3AI	GATC	3 cut(s)	283, 532, 676
Sau96I	GGNCC	4 cut(s)	121, 476, 565, 578
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	3 cut(s)	79, 326, 723
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	565, 578
Sse9I	AATT	7 cut(s)	116, 125, 279, 309, 452, 492, 504
SsiI	CCGC	6 cut(s)	24, 332, 358, 415, 436, 614
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	3 cut(s)	339, 590, 708
TaqI	TCGA	3 cut(s)	59, 216, 717
TasI	AATT	7 cut(s)	116, 125, 279, 309, 452, 492, 504
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	3 cut(s)	418, 438, 617
TfiI	GAWTC	3 cut(s)	160, 260, 719
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	5 cut(s)	200, 239, 401, 500, 662
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	2 cut(s)	222, 503
TspGWI	ACGGA	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	565, 578
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	2 cut(s)	176, 442
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.