Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000915.1

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1151

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

aaactgcccaattgatctgaaggaagcagtatcaagtgtaatttttgcatctcctagatgtgtggacgtaccagaactcatggatatccgcaaacacttcacagcaaaatatggaaaagagcttgtctctataactgttgaactacgaccggatagtggtgtaagccgcatgttaatagagaaattatctaccaaatcacctgatggccctaccaagatgaaaattttggctgcaattgcagaggaacataatgtcaaatgggatcccgaggcatttgaagagaagcctcctgaggacctgctgaacagaccaaatatgtttggaatggccagtatggattctgctcaacctccacctactcatgatgtcagggaacctcctaatgtccaagttccgcctaatagcatggccagtaaagctcatgtccacctgatcaacctccaattgctcaagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

151

Amino Acids

16.79

Weight (kDa)

5.96

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	3 cut(s)	89, 167, 396
AclWI	GGATC	2 cut(s)	258, 271
AcoI	YGGCCR	2 cut(s)	328, 409
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	141, 279
AluBI	AGCT	2 cut(s)	122, 420
AluI	AGCT	2 cut(s)	122, 420
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	258, 271
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	206, 328, 409
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	207, 296
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	330, 411
BamHI	GGATCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	167, 232
BlsI	GCNGC	2 cut(s)	168, 233
Bme18I	GGWCC	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	207, 296
BmiI	GGNNCC	2 cut(s)	265, 376
BmsI	GCATC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpuEI	CTTGAG	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	331, 412
Bse21I	CCTNAGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	2 cut(s)	331, 412
BseXI	GCAGC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	208, 330, 411
BsiEI	CGRYCG	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	208, 330, 411
BsoBI	CYCGRG	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	14, 263, 433
BspACI	CCGC	3 cut(s)	89, 167, 396
BspANI	GGCC	3 cut(s)	208, 330, 411
BspCNI	CTCAG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	362
BspLI	GGNNCC	2 cut(s)	265, 376
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	258, 271
BsrI	ACTGG	2 cut(s)	331, 412
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	14, 263, 433
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	17, 266, 436
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	14, 263, 433
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 417
BstNSI	RCATGY	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	208, 330, 411
BveI	ACCTGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	207, 296
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	5 cut(s)	80, 170, 363, 407, 423
CviJI	RGCY	8 cut(s)	122, 166, 208, 231, 287, 330, 411, 420
CviKI_1	RGCY	8 cut(s)	122, 166, 208, 231, 287, 330, 411, 420
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	3 cut(s)	16, 265, 435
DpnII	GATC	3 cut(s)	14, 263, 433
EaeI	YGGCCR	2 cut(s)	328, 409
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	86
FaeI	CATG	5 cut(s)	83, 173, 366, 410, 426
FatI	CATG	5 cut(s)	79, 169, 362, 406, 422
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	167, 232
Fsp4HI	GCNGC	2 cut(s)	167, 232
FspBI	CTAG	1 cut(s)	55
GluI	GCNGC	2 cut(s)	167, 232
HaeIII	GGCC	3 cut(s)	208, 330, 411
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	5 cut(s)	83, 173, 366, 410, 426
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	65, 428
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	267, 291, 363
Hpy8I	GTNNAC	2 cut(s)	65, 428
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	48, 234, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 417
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	83, 173, 366, 410, 426
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	14, 263, 433
LpnPI	CCDG	9 cut(s)	85, 163, 214, 304, 312, 344, 356, 425, 444
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	55
MaeII	ACGT	1 cut(s)	67
MalI	GATC	3 cut(s)	16, 265, 435
MboI	GATC	3 cut(s)	14, 263, 433
MboII	GAAGA	1 cut(s)	291
MfeI	CAATTG	3 cut(s)	10, 235, 444
MflI	RGATCY	1 cut(s)	263
MlsI	TGGCCA	2 cut(s)	330, 411
MluCI	AATT	6 cut(s)	10, 40, 183, 223, 235, 444
MluNI	TGGCCA	2 cut(s)	330, 411
MnlI	CCTC	7 cut(s)	236, 263, 287, 298, 361, 388, 450
Mox20I	TGGCCA	2 cut(s)	330, 411
MscI	TGGCCA	2 cut(s)	330, 411
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	2 cut(s)	330, 411
MspI	CCGG	1 cut(s)	150
MunI	CAATTG	3 cut(s)	10, 235, 444
MwoI	GCNNNNNNNGC	2 cut(s)	237, 417
NdeII	GATC	3 cut(s)	14, 263, 433
NlaIII	CATG	5 cut(s)	83, 173, 366, 410, 426
NlaIV	GGNNCC	2 cut(s)	265, 376
NspI	RCATGY	1 cut(s)	173
PagI	TCATGA	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	168, 233
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	265, 376
PspPI	GGNCC	2 cut(s)	207, 296
PspPPI	RGGWCCY	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	167, 232
Sau3AI	GATC	3 cut(s)	14, 263, 433
Sau96I	GGNCC	2 cut(s)	207, 296
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	6 cut(s)	10, 40, 183, 223, 235, 444
SsiI	CCGC	3 cut(s)	89, 167, 396
SspMI	CTAG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	70
TasI	AATT	6 cut(s)	10, 40, 183, 223, 235, 444
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.