Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003262.1

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Reverse (-)

2496 .. 2990

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003262.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgatgattcttcagaggatgaactctcacatgaaactcttagcaatagtcgccaagacctgtcccatcataaatcggtatcccgaggaaagacaagctcaacgtctgcatttttctttaattcagaggagagtgaggctgaggaagatcttcctagaaagattcccaccaccattgctcgtccaagtcaaaaattttctagaaggacacaaccctcttcttcaaattctgttagaacttagaagttctagcttaaggactacagttgttcctgatgcaccaaggacttcagactatggaaaatcctcttcaagaagttccaacgacactgaaactctaccagagccctcaggaagtcaggattggcagagacctatagaacaaacaagttcttattcaattccagaatccaagaagactgggacatcagtcaatggaaattcctcctcaagaagttcttatgccactgaaactctaccaagtgcctcatcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

164

Amino Acids

18.53

Weight (kDa)

10.06

Isoelectric Point (pI)

69.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	193, 225, 439
AcuI	CTGAAG	1 cut(s)	273
AflII	CTTAAG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	224, 312, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	2 cut(s)	98, 252
AluI	AGCT	2 cut(s)	98, 252
Alw26I	GTCTC	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	83
ApoI	RAATTY	3 cut(s)	193, 225, 439
Asp700I	GAANNNNTTC	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	155, 200, 249
BfmI	CTRYAG	2 cut(s)	261, 375
BfrI	CTTAAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	84, 281
Bse1I	ACTGG	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	84, 281
BseGI	GGATG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	131, 363
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	2 cut(s)	142, 436
BsiHKCI	CYCGRG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	48, 436
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	48, 436
Bso31I	GGTCTC	1 cut(s)	364
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	132, 362
BspTI	CTTAAG	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	84, 281
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	222, 313
BstAFI	CTTAAG	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	40, 140, 239, 349
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSFI	CTRYAG	2 cut(s)	261, 375
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	327, 465
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	98, 139, 252, 346
CviKI_1	RGCY	4 cut(s)	98, 139, 252, 346
DdeI	CTNAG	4 cut(s)	40, 140, 239, 349
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	222, 313
EarI	CTCTTC	2 cut(s)	222, 313
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	1 cut(s)	34
FaiI	YATR	5 cut(s)	32, 71, 297, 377, 462
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FaqI	GGGAC	2 cut(s)	48, 436
FatI	CATG	1 cut(s)	30
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	348
FspBI	CTAG	3 cut(s)	155, 200, 249
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	3 cut(s)	7, 162, 407
Hpy188I	TCNGA	3 cut(s)	15, 126, 292
Hpy188III	TCNNGA	8 cut(s)	83, 200, 272, 312, 351, 359, 404, 450
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	109, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	4 cut(s)	40, 140, 239, 349
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	7 cut(s)	73, 285, 336, 344, 354, 405, 417
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	3 cut(s)	155, 200, 249
MaeII	ACGT	1 cut(s)	103
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	6 cut(s)	142, 157, 209, 212, 300, 427
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	5 cut(s)	120, 193, 225, 399, 439
MmeI	TCCRAC	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	119, 254
MspCI	CTTAAG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	7, 162, 407
PshAI	GACNNNNGTC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	119, 254
Sau3AI	GATC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	5 cut(s)	62, 100, 106, 254, 376
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	2 cut(s)	261, 375
SmlI	CTYRAG	2 cut(s)	253, 448
SmoI	CTYRAG	2 cut(s)	253, 448
Sse9I	AATT	5 cut(s)	120, 193, 225, 399, 439
SspMI	CTAG	3 cut(s)	155, 200, 249
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	106
TasI	AATT	5 cut(s)	120, 193, 225, 399, 439
TfiI	GAWTC	3 cut(s)	7, 162, 407
Tru1I	TTAA	2 cut(s)	119, 254
Tru9I	TTAA	2 cut(s)	119, 254
TscAI	CASTG	2 cut(s)	334, 472
TspDTI	ATGAA	2 cut(s)	35, 47
TspRI	CASTG	2 cut(s)	334, 472
Vha464I	CTTAAG	1 cut(s)	253
XapI	RAATTY	3 cut(s)	193, 225, 439
XbaI	TCTAGA	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	155, 200, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.