Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022170.1

Orthogroup ID

OG0008176

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 461

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022170.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 355 bp

tgatctgaaggaagcagtatcaagtgtaatttttgcatctcctagatgtgcggacgtaccagaactcatggatatccgcaaacacttcacagcaaaatatggaaaagagttcgtctctatagctgttgaactacggccggatagtggtgtaagccgcatgttaatagagaaattatctaccaaatcacctgatggccctaccaagatgaaaattttggctgcaattgcagaggaacataatgtcaaatgggatcccgaggcatttgaagagaagcctcctgaggacctgctggtaagaatggttcagctcttattcatttattcattgcttgatatagatgacataaaactatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

117

Amino Acids

13.23

Weight (kDa)

5.04

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092741 RchiOBHm_Chr2g0092811 RchiOBHm_Chr6g0257341
rosa_multiflora	Rmu_co8093496.1_g000001 Rmu_sc0000915.1_g000001 Rmu_sc0001132.1_g000006 Rmu_sc0003262.1_g000004 Rmu_sc0003262.1_g000005 Rmu_sc0003262.1_g000006 Rmu_sc0004928.1_g000018 Rmu_sc0007564.1_g000001 Rmu_sc0013137.1_g000003 Rmu_sc0022170.1_g000001 Rmu_sc0037615.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148880 Rroxscaffold_2G00148890
rosa_rugosa	Rorug02G0029200
rosa_samantha	Rh2AG074800 Rh2AG075000 Rh2AG075100 Rh2CG077800 Rh5CG321400 Rh5DG249300
rosa_wichuraiana	Rw2G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AciI	CCGC	3 cut(s)	51, 77, 155
AclWI	GGATC	2 cut(s)	246, 259
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	129, 267
AluBI	AGCT	2 cut(s)	123, 308
AluI	AGCT	2 cut(s)	123, 308
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	246, 259
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	135, 194
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	195, 284
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	43
BfmI	CTRYAG	2 cut(s)	118, 351
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	155, 220
BlsI	GCNGC	2 cut(s)	156, 221
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	195, 284
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse21I	CCTNAGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	271
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	137, 196
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	137, 196
BsoBI	CYCGRG	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	2, 251
BspACI	CCGC	3 cut(s)	51, 77, 155
BspANI	GGCC	2 cut(s)	137, 196
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	246, 259
BsrDI	GCAATG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	2, 251
Bst6I	CTCTTC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	5, 254
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	2, 251
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	118, 351
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BstZI	CGGCCG	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	137, 196
BveI	ACCTGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	195, 284
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	68, 158
CviJI	RGCY	7 cut(s)	123, 137, 154, 196, 219, 275, 308
CviKI_1	RGCY	7 cut(s)	123, 137, 154, 196, 219, 275, 308
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	2 cut(s)	4, 253
DpnII	GATC	2 cut(s)	2, 251
EaeI	YGGCCR	1 cut(s)	135
EagI	CGGCCG	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	284
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	71, 161
FaiI	YATR	8 cut(s)	69, 100, 120, 159, 238, 336, 345, 353
FatI	CATG	2 cut(s)	67, 157
Fnu4HI	GCNGC	2 cut(s)	155, 220
Fsp4HI	GCNGC	2 cut(s)	155, 220
FspBI	CTAG	1 cut(s)	43
GluI	GCNGC	2 cut(s)	155, 220
HaeIII	GGCC	2 cut(s)	137, 196
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	71, 161
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	255, 279
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	36, 222, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	71, 161
Kzo9I	GATC	2 cut(s)	2, 251
LpnPI	CCDG	6 cut(s)	73, 151, 202, 276, 292, 300
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	43
MaeII	ACGT	1 cut(s)	55
MalI	GATC	2 cut(s)	4, 253
MboI	GATC	2 cut(s)	2, 251
MboII	GAAGA	1 cut(s)	279
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	4 cut(s)	28, 171, 211, 223
MnlI	CCTC	4 cut(s)	224, 251, 275, 286
MseI	TTAA	1 cut(s)	162
MspI	CCGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	2, 251
NlaIII	CATG	2 cut(s)	71, 161
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	156, 221
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	195, 284
PspPPI	RGGWCCY	1 cut(s)	284
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	155, 220
Sau3AI	GATC	2 cut(s)	2, 251
Sau96I	GGNCC	2 cut(s)	195, 284
SetI	ASST	5 cut(s)	58, 125, 191, 289, 310
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	2 cut(s)	118, 351
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	4 cut(s)	28, 171, 211, 223
SsiI	CCGC	3 cut(s)	51, 77, 155
SspMI	CTAG	1 cut(s)	43
TaiI	ACGT	1 cut(s)	58
TasI	AATT	4 cut(s)	28, 171, 211, 223
TauI	GCSGC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	3 cut(s)	222, 305, 313
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	161
XspI	CTAG	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.