RchiOBHm_Chr2g0117571

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
29732029 .. 29732430
402 bp
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UTR
Exon/CDS
Intron
PRQ49048

Sequence Viewer

Length: 231 bp
ATGCCCGAGTTGCTAATTGGACGGCGGTTAGGGTTGAAGACGATTGAGGAGAGACGGTGGAGAAGAAGTGCAGCGGTGAGGTCAGAAGAAGCTGTGAGAGAAGAGATGGGAAAGCCAATCTCAAGAGAGAAGATATCTGGGTGGGAATATGAAGATTTGGTATGGGTAGGAAGAACGAGGGAGAGGAGAAGGAAAGAGGGAGAAGGAGAGAGAAACAATAAAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

9.17

Weight (kDa)

10.38

Isoelectric Point (pI)

97.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 74
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 106
BsaXI ACNNNNNCTCC 4 cut(s) 41, 52, 71, 82
BseRI GAGGAG 2 cut(s) 62, 199
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 5
BspACI CCGC 2 cut(s) 25, 74
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 44
CviJI RGCY 2 cut(s) 92, 115
CviKI_1 RGCY 2 cut(s) 92, 115
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 46
FaiI YATR 2 cut(s) 150, 163
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 123
HpyAV CCTTC 2 cut(s) 183, 197
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
LpnPI CCDG 1 cut(s) 123
Lsp1109I GCAGC 1 cut(s) 83
MboII GAAGA 7 cut(s) 49, 75, 98, 113, 142, 164, 183
MluCI AATT 1 cut(s) 15
MnlI CCTC 5 cut(s) 40, 72, 171, 177, 190
MspA1I CMGCKG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 73
SatI GCNGC 1 cut(s) 72
SetI ASST 2 cut(s) 83, 94
SgeI CNNG 5 cut(s) 17, 19, 135, 150, 189
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 25, 74
TaaI ACNGT 1 cut(s) 57
TasI AATT 1 cut(s) 15
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.