Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Reverse (-)

9356718 .. 9357156

Gene Structure 439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGAGAAAGGTAAGAACCTTCGACCCAATCGGCGCTCCTCCTTTCCCCCTCGGATTCCCTCACGCTGGCGACGAGCCCCCTGCCGCCGTCTCTCAGACCACCGTCTACCGCTTGCAGTCGCTGATCACCGGCGAAGGTTCAGATCACTACTCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCAGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCCTGATCACAAGCCCTCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGCAGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGACTTTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

115

Amino Acids

12.5

Weight (kDa)

4.73

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	45 - 101	2e-08	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	87, 112
AcsI	RAATTY	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgeI	ACCGGT	1 cut(s)	278
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	97, 198
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	315
AsiGI	ACCGGT	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	38, 229
AsuHPI	GGTGA	2 cut(s)	16, 121
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	74, 290
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BclI	TGATCA	2 cut(s)	126, 232
BcoDI	GTCTC	2 cut(s)	97, 198
BfoI	RGCGCY	2 cut(s)	39, 230
BisI	GCNGC	2 cut(s)	87, 288
BlsI	GCNGC	2 cut(s)	88, 289
BmiI	GGNNCC	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	52, 291
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	2 cut(s)	131, 278
BseDI	CCNNGG	2 cut(s)	52, 291
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	132, 201, 279
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	97, 198
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	126, 145, 232
BspACI	CCGC	2 cut(s)	87, 112
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	226
BsrFI	RCCGGY	2 cut(s)	131, 278
BssAI	RCCGGY	2 cut(s)	131, 278
BssECI	CCNNGG	2 cut(s)	52, 291
BssMI	GATC	3 cut(s)	126, 145, 232
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	70, 116
BstDEI	CTNAG	1 cut(s)	96
BstH2I	RGCGCY	2 cut(s)	39, 230
BstHHI	GCGC	2 cut(s)	38, 229
BstKTI	GATC	3 cut(s)	129, 148, 235
BstMAI	GTCTC	2 cut(s)	97, 198
BstMBI	GATC	3 cut(s)	126, 145, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstPAI	GACNNNNGTC	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	70, 116
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	2 cut(s)	38, 229
Cfr10I	RCCGGY	2 cut(s)	131, 278
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	5 cut(s)	79, 160, 200, 241, 290
CviKI_1	RGCY	5 cut(s)	79, 160, 200, 241, 290
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	3 cut(s)	128, 147, 234
DpnII	GATC	3 cut(s)	126, 145, 232
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	212, 339
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	2 cut(s)	126, 232
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	87, 288
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	87, 288
GlaI	GCGC	2 cut(s)	37, 228
GluI	GCNGC	2 cut(s)	87, 288
HaeII	RGCGCY	2 cut(s)	39, 230
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	3 cut(s)	132, 201, 279
HhaI	GCGC	2 cut(s)	38, 229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	2 cut(s)	36, 227
HinP1I	GCGC	2 cut(s)	36, 227
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	57, 167
HpaII	CCGG	3 cut(s)	132, 201, 279
HphI	GGTGA	2 cut(s)	16, 121
Hpy166II	GTNNAC	2 cut(s)	109, 255
Hpy188I	TCNGA	4 cut(s)	56, 99, 145, 157
Hpy8I	GTNNAC	2 cut(s)	109, 255
Hpy99I	CGWCG	3 cut(s)	77, 250, 253
HpyAV	CCTTC	2 cut(s)	31, 131
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	2 cut(s)	36, 227
KasI	GGCGCC	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	126, 232
Kzo9I	GATC	3 cut(s)	126, 145, 232
LmnI	GCTCC	2 cut(s)	43, 157
LpnPI	CCDG	9 cut(s)	54, 96, 145, 173, 208, 214, 243, 292, 296
Lsp1109I	GCAGC	1 cut(s)	299
MaeII	ACGT	1 cut(s)	251
MalI	GATC	3 cut(s)	128, 147, 234
MboI	GATC	3 cut(s)	126, 145, 232
MboII	GAAGA	2 cut(s)	286, 344
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	315
Mly113I	GGCGCC	1 cut(s)	227
MnlI	CCTC	5 cut(s)	51, 62, 72, 190, 253
MspI	CCGG	3 cut(s)	132, 201, 279
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NarI	GGCGCC	1 cut(s)	227
NdeII	GATC	3 cut(s)	126, 145, 232
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	57, 167
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	88, 289
PluTI	GGCGCC	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	124
SatI	GCNGC	2 cut(s)	87, 288
Sau3AI	GATC	3 cut(s)	126, 145, 232
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	6 cut(s)	15, 23, 142, 162, 254, 344
SfoI	GGCGCC	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	87, 112
SspDI	GGCGCC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	24, 245, 323
TasI	AATT	1 cut(s)	315
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	57, 167
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.