Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Reverse (-)

61713323 .. 61727440

Gene Structure 14118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCTTAGTGATTGGTGCTCAAATCCTTTCAATTGACAATCTTCCTTGTACAGAGATGCCCAGCGCCACCATGATCGACGTTCTTCGTGCAGCTAGGTTGGAGTTCCAGTTCGTTCAGCGAGGTCGGAAGTCGCGCCATCCATCGCCAGTAGCGAGTTCGTGTTGTAGATTTCTTGCTGTTGACGAGTCACTCTCGGGAACTCCAGTAGTGGTCGAAGAATCATGGGAAGATGAATTGCTACGCAAGACTCGAGAGTTTAACAAATTGATGAATCACATATGGACTTGCTCCCCATTTTTTCTCCTGGATTTCTGGCAACATGCTCTGAGACTGAACAAATTGCAGAGACCTCCAATACCGTATATACGTACTAGTATGCGCCTCGGATTCGTACCCCTAGCTCAGCTTGCATCCACCCCTGACCGCTCCACGTACGTACAATTGAGCTCACAGTTGTTGCACCTGCAACAAAGGGAATCTGGTATAGTTCATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NRDE-2

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

8.84

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	429
AccII	CGCG	1 cut(s)	136
AciI	CCGC	1 cut(s)	427
AfaI	GTAC	5 cut(s)	52, 373, 396, 437, 441
AgsI	TTSAA	1 cut(s)	33
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	306
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	95, 404, 409, 450
AluI	AGCT	4 cut(s)	95, 404, 409, 450
Alw21I	GWGCWC	2 cut(s)	22, 452
Alw26I	GTCTC	2 cut(s)	325, 343
Ama87I	CYCGRG	2 cut(s)	196, 252
ApeKI	GCWGC	1 cut(s)	92
AspLEI	GCGC	3 cut(s)	68, 138, 384
AvaI	CYCGRG	2 cut(s)	196, 252
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	22, 452
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	147, 151
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	325, 343
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	3 cut(s)	96, 375, 401
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	1 cut(s)	93
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	308
BmeT110I	CYCGRG	2 cut(s)	196, 252
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	48, 422
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaAI	YACGTR	4 cut(s)	371, 435, 439, 498
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse1I	ACTGG	3 cut(s)	109, 149, 206
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	139, 413
BseMII	CTCAG	2 cut(s)	320, 419
BseNI	ACTGG	3 cut(s)	109, 149, 206
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	22, 452
BsiHKCI	CYCGRG	2 cut(s)	196, 252
BsiWI	CGTACG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	325, 343
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	2 cut(s)	196, 252
Bsp1286I	GDGCHC	2 cut(s)	22, 452
Bsp1407I	TGTACA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	321, 418
BspFNI	CGCG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	109, 149, 206
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	363, 456
BstAUI	TGTACA	1 cut(s)	50
BstBAI	YACGTR	4 cut(s)	371, 435, 439, 498
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	7, 329, 405
BstF5I	GGATG	2 cut(s)	139, 413
BstFNI	CGCG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	68, 138, 384
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	325, 343
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	306
BstSNI	TACGTA	2 cut(s)	371, 439
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	104
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	139, 413
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	3 cut(s)	68, 138, 384
Csp6I	GTAC	5 cut(s)	51, 372, 395, 436, 440
CviAII	CATG	3 cut(s)	73, 225, 323
CviJI	RGCY	5 cut(s)	6, 95, 404, 409, 450
CviKI_1	RGCY	5 cut(s)	6, 95, 404, 409, 450
CviQI	GTAC	5 cut(s)	51, 372, 395, 436, 440
DdeI	CTNAG	3 cut(s)	7, 329, 405
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	450
Eco105I	TACGTA	2 cut(s)	371, 439
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	450
Eco88I	CYCGRG	2 cut(s)	196, 252
EcoICRI	GAGCTC	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	3 cut(s)	76, 228, 326
FatI	CATG	3 cut(s)	72, 224, 322
FauNDI	CATATG	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	126, 400
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	3 cut(s)	96, 375, 401
GlaI	GCGC	3 cut(s)	67, 137, 383
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	69
HhaI	GCGC	3 cut(s)	68, 138, 384
Hin1II	CATG	3 cut(s)	76, 228, 326
Hin6I	GCGC	3 cut(s)	66, 136, 382
HinP1I	GCGC	3 cut(s)	66, 136, 382
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	6 cut(s)	188, 221, 250, 274, 390, 479
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	129, 330, 389
Hpy188III	TCNNGA	2 cut(s)	198, 254
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	363, 456
HpyCH4IV	ACGT	5 cut(s)	81, 370, 434, 438, 497
HpyCH4V	TGCA	5 cut(s)	92, 346, 413, 463, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	3 cut(s)	7, 329, 405
HpySE526I	ACGT	5 cut(s)	81, 370, 434, 438, 497
Hsp92II	CATG	3 cut(s)	76, 228, 326
HspAI	GCGC	3 cut(s)	66, 136, 382
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	296, 434
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	2 cut(s)	48, 422
MaeI	CTAG	3 cut(s)	96, 375, 401
MaeII	ACGT	5 cut(s)	81, 370, 434, 438, 497
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	77
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	35, 77, 230, 242
MfeI	CAATTG	2 cut(s)	33, 443
MhlI	GDGCHC	2 cut(s)	22, 452
MluCI	AATT	5 cut(s)	33, 236, 266, 341, 443
MlyI	GAGTC	2 cut(s)	197, 244
MmeI	TCCRAC	2 cut(s)	81, 107
MnlI	CCTC	3 cut(s)	116, 363, 395
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	2 cut(s)	33, 443
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	76, 228, 326
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 250
PfeI	GAWTC	4 cut(s)	221, 274, 390, 479
Pfl23II	CGTACG	1 cut(s)	435
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	196, 244
PpsI	GAGTC	2 cut(s)	196, 244
Ppu21I	YACGTR	4 cut(s)	371, 435, 439, 498
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	306
PspLI	CGTACG	1 cut(s)	435
RsaI	GTAC	5 cut(s)	52, 373, 396, 437, 441
RsaNI	GTAC	5 cut(s)	51, 372, 395, 436, 440
SacI	GAGCTC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	197, 244
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	22, 452
SfaNI	GCATC	2 cut(s)	48, 422
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SnaBI	TACGTA	2 cut(s)	371, 439
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	5 cut(s)	33, 236, 266, 341, 443
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	3 cut(s)	96, 375, 401
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	363, 456
TaiI	ACGT	5 cut(s)	84, 373, 437, 441, 500
TaqI	TCGA	3 cut(s)	78, 216, 253
TasI	AATT	5 cut(s)	33, 236, 266, 341, 443
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	221, 274, 390, 479
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	3 cut(s)	249, 287, 482
XceI	RCATGY	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	3 cut(s)	96, 375, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.