Rroxscaffold_4G00295960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008903
Physical Location & Seq
Reverse (-)
16058930 .. 16060887
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295960.1

Sequence Viewer

Length: 219 bp
ATGGATGTGGACGTCGATCCGACCCGGTCTGAGGAAATTCGGGTCGACCTGGTCCTTCGAGTTCATCGTGAACACCATGACTCTCTCTTCGGCGCAGCACGAGTTGAGCAAGCCGTCCATGAAGTTCGATATCCCGGAGAAGCTGACCGCCGTCGATTTCTCGGCGAAGAACCGATCCAGGTCCTCGATGAGGATCACCGACTTGCTCGTGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.41

Weight (kDa)

5.24

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 148
AclWI GGATC 3 cut(s) 11, 169, 201
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 31, 190
AjnI CCWGG 2 cut(s) 48, 177
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 3 cut(s) 11, 169, 201
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 52, 181
AsuC2I CCSGG 2 cut(s) 25, 135
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 2 cut(s) 52, 181
BauI CACGAG 2 cut(s) 99, 207
BbvI GCAGC 1 cut(s) 107
BceAI ACGGC 2 cut(s) 98, 135
BciT130I CCWGG 2 cut(s) 50, 179
BcnI CCSGG 2 cut(s) 25, 135
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 4 cut(s) 25, 50, 135, 179
Bme18I GGWCC 2 cut(s) 52, 181
BmgT120I GGNCC 2 cut(s) 52, 181
BmrFI CCNGG 4 cut(s) 25, 50, 135, 179
BoxI GACNNNNGTC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 25, 135
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 190
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 50, 179
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 31, 190
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 25, 135
BslI CCNNNNNNNGG 2 cut(s) 31, 190
Bsp143I GATC 3 cut(s) 16, 174, 193
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 3 cut(s) 11, 169, 201
BssMI GATC 3 cut(s) 16, 174, 193
BssNI GRCGYC 1 cut(s) 12
BssSI CACGAG 2 cut(s) 99, 207
Bst2BI CACGAG 2 cut(s) 99, 207
Bst2UI CCWGG 2 cut(s) 50, 179
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 19, 177, 196
BstMBI GATC 3 cut(s) 16, 174, 193
BstNI CCWGG 2 cut(s) 50, 179
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 4 cut(s) 23, 48, 133, 177
BstV1I GCAGC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 52, 181
CsiI ACCWGGT 1 cut(s) 48
CviAII CATG 2 cut(s) 77, 119
CviJI RGCY 2 cut(s) 113, 143
CviKI_1 RGCY 2 cut(s) 113, 143
DdeI CTNAG 1 cut(s) 30
DpnI GATC 3 cut(s) 18, 176, 195
DpnII GATC 3 cut(s) 16, 174, 193
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 52, 181
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 48, 177
EcoRV GATATC 1 cut(s) 131
FaeI CATG 2 cut(s) 80, 122
FaiI YATR 2 cut(s) 78, 120
FatI CATG 2 cut(s) 76, 118
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 96
HapII CCGG 2 cut(s) 25, 135
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 80, 122
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 80
HpaII CCGG 2 cut(s) 25, 135
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 10, 46, 71
Hpy188I TCNGA 2 cut(s) 21, 31
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 3 cut(s) 10, 46, 71
Hpy99I CGWCG 2 cut(s) 17, 156
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 80, 122
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 3 cut(s) 16, 174, 193
LpnPI CCDG 6 cut(s) 35, 38, 62, 148, 164, 191
Lsp1109I GCAGC 1 cut(s) 107
MabI ACCWGGT 1 cut(s) 48
MaeII ACGT 1 cut(s) 12
MalI GATC 3 cut(s) 18, 176, 195
MboI GATC 3 cut(s) 16, 174, 193
MboII GAAGA 2 cut(s) 79, 179
MluCI AATT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 25, 184, 194
MspI CCGG 2 cut(s) 25, 135
MspR9I CCNGG 4 cut(s) 25, 50, 135, 179
MvaI CCWGG 2 cut(s) 50, 179
NciI CCSGG 2 cut(s) 25, 135
NdeII GATC 3 cut(s) 16, 174, 193
NlaIII CATG 2 cut(s) 80, 122
NmeAIII GCCGAG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PflFI GACNNNGTC 2 cut(s) 25, 50
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 48, 177
PspGI CCWGG 2 cut(s) 48, 177
PspPI GGNCC 2 cut(s) 52, 181
PspPPI RGGWCCY 1 cut(s) 181
PsyI GACNNNGTC 2 cut(s) 25, 50
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 16, 174, 193
Sau96I GGNCC 2 cut(s) 52, 181
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 4 cut(s) 25, 50, 135, 179
SetI ASST 4 cut(s) 15, 51, 145, 183
SexAI ACCWGGT 1 cut(s) 48
SinI GGWCC 2 cut(s) 52, 181
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 148
StyD4I CCNGG 4 cut(s) 23, 48, 133, 177
TaiI ACGT 1 cut(s) 15
TaqI TCGA 6 cut(s) 15, 45, 58, 127, 154, 186
TasI AATT 1 cut(s) 36
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 53, 135
Tth111I GACNNNGTC 2 cut(s) 25, 50
VpaK11BI GGWCC 2 cut(s) 52, 181
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 45
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.