Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

28457709 .. 28459711

Gene Structure 2003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATTGAGATCGGAAAATTCCTCAAAACCCGCGTCAACGTTTTCCGATTCCGCAGCGTCTGCTCTCTCTGGCGCTCCGCCTTCCCTCCTTTAGACCCAATCGGCGCTCCTCCTCTCCCCCTCAGATTCCCTCACGCCGGCGACGAGCCCCCTGCCGCCGTCTCTCAGACCACCGTCTACTACTTGCAGTCACTGATCACCGGCGAAGGTTCAGATCACTACTCGGAGCTTTTGGAATCAGGTCAGTTTTCTTTTCAGGCGATGGAAGCCGGAGACTACATGGCGTGTTTTTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGTGGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTCTGGAAGAGTATAGTCGTGCAACCCAGAAGCCAGCGCTCGTGCAGTCGGCGGTGAGTTTGTGCAGCCCAAAAGACGGCGGCGAGTTCGTGCAGCCGACGCCATCGATCGTACAGCCGGCGGCGAGTTTGTGCAGCGAGCTCGGAGTTCCTTTACGTCACCTCTGTGCAGCTAGGTCGGAGTTCCGGTTCGTGCAGCAAGCTCGGAGTTCGCGCCATCTATCGCCGGCGGCCAGTTTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

213

Amino Acids

23.16

Weight (kDa)

6.2

Isoelectric Point (pI)

68.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	69 - 124	7.3e-07	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	33, 607
AciI	CCGC	8 cut(s)	31, 52, 78, 156, 446, 474, 515, 623
AclI	AACGTT	1 cut(s)	39
AcoI	YGGCCR	2 cut(s)	357, 624
AcsI	RAATTY	2 cut(s)	17, 384
AcyI	GRCGYC	2 cut(s)	296, 494
AfaI	GTAC	1 cut(s)	507
AfeI	AGCGCT	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	137, 470
AgeI	ACCGGT	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	558
AloI	GAACNNNNNNTCC	2 cut(s)	566, 598
AluBI	AGCT	4 cut(s)	229, 535, 566, 596
AluI	AGCT	4 cut(s)	229, 535, 566, 596
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	166, 267
AlwNI	CAGNNNCTG	2 cut(s)	60, 193
Aor51HI	AGCGCT	1 cut(s)	432
AoxI	GGCC	2 cut(s)	357, 624
ApeKI	GCWGC	6 cut(s)	54, 459, 487, 528, 563, 589
ApoI	RAATTY	2 cut(s)	17, 384
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	5 cut(s)	75, 107, 298, 433, 609
AsuHPI	GGTGA	3 cut(s)	190, 460, 545
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	150, 537
BauI	CACGAG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	6 cut(s)	66, 471, 499, 540, 575, 601
BccI	CCATC	3 cut(s)	256, 505, 618
BceAI	ACGGC	3 cut(s)	143, 359, 487
BcgI	CGANNNNNNTGC	8 cut(s)	134, 168, 517, 551, 552, 578, 586, 612
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	166, 267
BfaI	CTAG	1 cut(s)	567
BfoI	RGCGCY	4 cut(s)	76, 108, 299, 434
BmiI	GGNNCC	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	296, 494
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	2 cut(s)	347, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 470
Bse118I	RCCGGY	5 cut(s)	137, 200, 347, 511, 619
Bse1I	ACTGG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	137, 470
BseMII	CTCAG	2 cut(s)	136, 179
BseNI	ACTGG	1 cut(s)	627
BseRI	GAGGAG	2 cut(s)	99, 102
BseXI	GCAGC	6 cut(s)	66, 471, 499, 540, 575, 601
BsgI	GTGCAG	6 cut(s)	458, 478, 506, 547, 582, 608
Bsh1236I	CGCG	2 cut(s)	33, 607
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	2 cut(s)	359, 626
BshNI	GGYRCC	1 cut(s)	295
BshTI	ACCGGT	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	7 cut(s)	138, 201, 270, 348, 512, 580, 620
BslI	CCNNNNNNNGG	2 cut(s)	137, 470
BsmAI	GTCTC	2 cut(s)	166, 267
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	359, 626
Bsp1286I	GDGCHC	2 cut(s)	150, 537
Bsp143I	GATC	5 cut(s)	9, 195, 214, 301, 501
BspACI	CCGC	8 cut(s)	31, 52, 78, 156, 446, 474, 515, 623
BspANI	GGCC	2 cut(s)	359, 626
BspCNI	CTCAG	2 cut(s)	135, 178
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	2 cut(s)	33, 607
BspLI	GGNNCC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	5 cut(s)	137, 200, 347, 511, 619
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	5 cut(s)	137, 200, 347, 511, 619
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	5 cut(s)	9, 195, 214, 301, 501
BssNI	GRCGYC	2 cut(s)	296, 494
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	2 cut(s)	296, 494
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstC8I	GCNNGC	6 cut(s)	139, 429, 513, 533, 594, 621
BstDEI	CTNAG	2 cut(s)	122, 165
BstFNI	CGCG	2 cut(s)	33, 607
BstH2I	RGCGCY	4 cut(s)	76, 108, 299, 434
BstHHI	GCGC	5 cut(s)	75, 107, 298, 433, 609
BstKTI	GATC	5 cut(s)	12, 198, 217, 304, 504
BstMAI	GTCTC	2 cut(s)	166, 267
BstMBI	GATC	5 cut(s)	9, 195, 214, 301, 501
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 266, 493
BstPAI	GACNNNNGTC	1 cut(s)	173
BstUI	CGCG	2 cut(s)	33, 607
BstV1I	GCAGC	6 cut(s)	66, 471, 499, 540, 575, 601
BstV2I	GAAGAC	1 cut(s)	350
Bsu15I	ATCGAT	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	359, 626
BsuTUI	ATCGAT	1 cut(s)	500
BtgZI	GCGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	6 cut(s)	139, 429, 513, 533, 594, 621
CaiI	CAGNNNCTG	2 cut(s)	60, 193
CfoI	GCGC	5 cut(s)	75, 107, 298, 433, 609
Cfr10I	RCCGGY	5 cut(s)	137, 200, 347, 511, 619
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	3 cut(s)	22, 46, 502
Csp6I	GTAC	1 cut(s)	506
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	2 cut(s)	122, 165
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	5 cut(s)	11, 197, 216, 303, 503
DpnII	GATC	5 cut(s)	9, 195, 214, 301, 501
EaeI	YGGCCR	2 cut(s)	357, 624
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	2 cut(s)	150, 537
Eco47III	AGCGCT	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	2 cut(s)	150, 537
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	360
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	283
FaiI	YATR	2 cut(s)	281, 408
FatI	CATG	1 cut(s)	279
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	177
FriOI	GRGCYC	2 cut(s)	150, 537
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	5 cut(s)	74, 106, 297, 432, 608
HaeII	RGCGCY	4 cut(s)	76, 108, 299, 434
HaeIII	GGCC	2 cut(s)	359, 626
HapII	CCGG	7 cut(s)	138, 201, 270, 348, 512, 580, 620
HgaI	GACGC	3 cut(s)	22, 46, 502
HhaI	GCGC	5 cut(s)	75, 107, 298, 433, 609
Hin1I	GRCGYC	2 cut(s)	296, 494
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	5 cut(s)	73, 105, 296, 431, 607
HinP1I	GCGC	5 cut(s)	73, 105, 296, 431, 607
HincII	GTYRAC	2 cut(s)	37, 324
HindII	GTYRAC	2 cut(s)	37, 324
HinfI	GANTC	3 cut(s)	48, 126, 236
HpaII	CCGG	7 cut(s)	138, 201, 270, 348, 512, 580, 620
HphI	GGTGA	3 cut(s)	190, 460, 545
Hpy166II	GTNNAC	3 cut(s)	37, 178, 324
Hpy188I	TCNGA	9 cut(s)	14, 47, 125, 168, 214, 226, 539, 574, 600
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	3 cut(s)	37, 178, 324
Hpy99I	CGWCG	4 cut(s)	146, 319, 322, 496
HpyAV	CCTTC	2 cut(s)	91, 200
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	39, 320, 550
HpyCH4V	TGCA	8 cut(s)	187, 416, 439, 459, 487, 528, 563, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 266, 493
HpyF3I	CTNAG	2 cut(s)	122, 165
HpySE526I	ACGT	3 cut(s)	39, 320, 550
Hsp92I	GRCGYC	2 cut(s)	296, 494
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	5 cut(s)	73, 105, 296, 431, 607
KasI	GGCGCC	1 cut(s)	295
KroI	GCCGGC	3 cut(s)	137, 511, 619
KroNI	GCCGGC	3 cut(s)	139, 513, 621
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	9, 195, 214, 301, 501
LmnI	GCTCC	3 cut(s)	80, 112, 226
Lsp1109I	GCAGC	6 cut(s)	66, 471, 499, 540, 575, 601
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	3 cut(s)	39, 320, 550
MaeIII	GTNAC	2 cut(s)	189, 551
MalI	GATC	5 cut(s)	11, 197, 216, 303, 503
MboI	GATC	5 cut(s)	9, 195, 214, 301, 501
MboII	GAAGA	2 cut(s)	355, 413
MhlI	GDGCHC	2 cut(s)	150, 537
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	2 cut(s)	17, 384
MluNI	TGGCCA	1 cut(s)	359
Mly113I	GGCGCC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	7 cut(s)	32, 96, 120, 123, 131, 141, 566
Mox20I	TGGCCA	1 cut(s)	359
MreI	CGCCGGCG	2 cut(s)	137, 619
MroNI	GCCGGC	3 cut(s)	137, 511, 619
MscI	TGGCCA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	7 cut(s)	138, 201, 270, 348, 512, 580, 620
MvnI	CGCG	2 cut(s)	33, 607
MwoI	GCNNNNNNNGC	3 cut(s)	60, 266, 493
NaeI	GCCGGC	3 cut(s)	139, 513, 621
NarI	GGCGCC	1 cut(s)	296
NdeII	GATC	5 cut(s)	9, 195, 214, 301, 501
NgoMIV	GCCGGC	3 cut(s)	137, 511, 619
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	189, 551
OliI	CACNNNNGTG	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdiI	GCCGGC	3 cut(s)	139, 513, 621
PfeI	GAWTC	3 cut(s)	48, 126, 236
PinAI	ACCGGT	1 cut(s)	347
Ple19I	CGATCG	1 cut(s)	504
PluTI	GGCGCC	1 cut(s)	299
PshAI	GACNNNNGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	537
Psp1406I	AACGTT	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	297
PstNI	CAGNNNCTG	2 cut(s)	60, 193
PvuI	CGATCG	1 cut(s)	504
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	537
Sau3AI	GATC	5 cut(s)	9, 195, 214, 301, 501
SduI	GDGCHC	2 cut(s)	150, 537
SfoI	GGCGCC	1 cut(s)	297
SgrAI	CRCCGGYG	3 cut(s)	137, 200, 619
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	2 cut(s)	17, 384
SsiI	CCGC	8 cut(s)	31, 52, 78, 156, 446, 474, 515, 623
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	3 cut(s)	42, 323, 553
TaqI	TCGA	1 cut(s)	500
TasI	AATT	2 cut(s)	17, 384
TauI	GCSGC	4 cut(s)	158, 477, 518, 626
TfiI	GAWTC	3 cut(s)	48, 126, 236
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	189, 551
TseI	GCWGC	6 cut(s)	54, 459, 487, 528, 563, 589
Tsp45I	GTSAC	2 cut(s)	189, 551
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	17, 384
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.