Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

10589634 .. 10590260

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGCTCGAGCGGCTTCGGGCCACCACCTCCGGCTTCTCTCTGTCTCTATCTCTCTATCGCAAGTCAATTCTCTGGCACTGGCTGACTGCCCGGGGAGTCGCAAACCCAGATTGGAAAGTGCGGCAACAACACCAGAGGTATACGCGGTGAGTCGCGAACTGAGATCTTGGTGCCCGGTGTCGGCATGCGTCTGCTTTCTCTGGCGCTCCGCCCTCCCTCCTCTAGACCCAATCGGCGCTCCTCCTCTCCCCCTCGGATTCCCTCACACCGGCGACGAGCCCCCTGCCGCCGTCTCTCAGACCACCGTCTACCGCTTGCAGTCGCTGATCACCGGCGAAGGTTCAGATCACTACTCAGAGCTTATGGAATCAGGTCAGTTTGTTTTTCAGGCGGTGAAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGCGGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTCTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

182

Amino Acids

19.66

Weight (kDa)

5.69

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	113 - 169	1.3e-06	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	174, 430
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	144, 312
AccII	CGCG	2 cut(s)	149, 159
AciI	CCGC	8 cut(s)	14, 125, 149, 213, 291, 316, 395, 491
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	184, 272
AgeI	ACCGGT	1 cut(s)	482
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	52, 301, 402
AlwNI	CAGNNNCTG	1 cut(s)	328
Ama87I	CYCGRG	2 cut(s)	9, 94
AoxI	GGCC	3 cut(s)	22, 402, 492
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	519
AsiGI	ACCGGT	1 cut(s)	482
AspLEI	GCGC	3 cut(s)	210, 242, 433
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	3 cut(s)	95, 96, 179
AsuHPI	GGTGA	3 cut(s)	163, 325, 409
AvaI	CYCGRG	2 cut(s)	9, 94
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	174, 430
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	485
BceAI	ACGGC	2 cut(s)	278, 494
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	3 cut(s)	95, 96, 179
BcoDI	GTCTC	3 cut(s)	52, 301, 402
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	3 cut(s)	211, 243, 434
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	5 cut(s)	6, 15, 126, 291, 492
BlsI	GCNGC	5 cut(s)	7, 16, 127, 292, 493
Bme1390I	CCNGG	3 cut(s)	95, 96, 179
BmeT110I	CYCGRG	2 cut(s)	9, 94
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	176, 432
BmrFI	CCNGG	3 cut(s)	95, 96, 179
BoxI	GACNNNNGTC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	485
BpuMI	CCSGG	3 cut(s)	95, 96, 179
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	94, 95, 256, 495
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 272
Bse118I	RCCGGY	3 cut(s)	272, 335, 482
Bse1I	ACTGG	1 cut(s)	87
BseDI	CCNNGG	4 cut(s)	94, 95, 256, 495
BseLI	CCNNNNNNNGG	2 cut(s)	184, 272
BseMII	CTCAG	3 cut(s)	155, 314, 372
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	3 cut(s)	213, 234, 237
BseSI	GKGCMC	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	149, 159
BshFI	GGCC	3 cut(s)	24, 404, 494
BshNI	GGYRCC	2 cut(s)	174, 430
BshTI	ACCGGT	1 cut(s)	482
BsiHKCI	CYCGRG	2 cut(s)	9, 94
BsiSI	CCGG	7 cut(s)	34, 95, 179, 273, 336, 405, 483
BslI	CCNNNNNNNGG	2 cut(s)	184, 272
BsmAI	GTCTC	3 cut(s)	52, 301, 402
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	24, 404, 494
BsoBI	CYCGRG	2 cut(s)	9, 94
Bsp1286I	GDGCHC	2 cut(s)	179, 285
Bsp143I	GATC	4 cut(s)	167, 330, 349, 436
Bsp68I	TCGCGA	1 cut(s)	159
BspACI	CCGC	8 cut(s)	14, 125, 149, 213, 291, 316, 395, 491
BspANI	GGCC	3 cut(s)	24, 404, 494
BspCNI	CTCAG	3 cut(s)	156, 313, 371
BspFNI	CGCG	2 cut(s)	149, 159
BspLI	GGNNCC	2 cut(s)	176, 432
BspT107I	GGYRCC	2 cut(s)	174, 430
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	3 cut(s)	272, 335, 482
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	3 cut(s)	272, 335, 482
BssECI	CCNNGG	4 cut(s)	94, 95, 256, 495
BssMI	GATC	4 cut(s)	167, 330, 349, 436
BssNAI	GTATAC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	495
Bst1107I	GTATAC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	190, 320
BstDEI	CTNAG	3 cut(s)	164, 300, 358
BstFNI	CGCG	2 cut(s)	149, 159
BstH2I	RGCGCY	3 cut(s)	211, 243, 434
BstHHI	GCGC	3 cut(s)	210, 242, 433
BstKTI	GATC	4 cut(s)	170, 333, 352, 439
BstMAI	GTCTC	3 cut(s)	52, 301, 402
BstMBI	GATC	4 cut(s)	167, 330, 349, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 401
BstNSI	RCATGY	1 cut(s)	192
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	93, 94, 177
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	2 cut(s)	149, 159
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	24, 404, 494
BtsIMutI	CAGTG	1 cut(s)	80
BtuMI	TCGCGA	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	190, 320
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	3 cut(s)	210, 242, 433
Cfr10I	RCCGGY	3 cut(s)	272, 335, 482
Cfr13I	GGNCC	1 cut(s)	22
Cfr9I	CCCGGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	181
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	2 cut(s)	189, 415
DdeI	CTNAG	3 cut(s)	164, 300, 358
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	4 cut(s)	169, 332, 351, 438
DpnII	GATC	4 cut(s)	167, 330, 349, 436
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	9, 94
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	2 cut(s)	192, 418
FaiI	YATR	5 cut(s)	145, 190, 368, 416, 543
FatI	CATG	2 cut(s)	188, 414
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	2 cut(s)	144, 312
Fnu4HI	GCNGC	5 cut(s)	6, 15, 126, 291, 492
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	5 cut(s)	6, 15, 126, 291, 492
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	3 cut(s)	209, 241, 432
GluI	GCNGC	5 cut(s)	6, 15, 126, 291, 492
HaeII	RGCGCY	3 cut(s)	211, 243, 434
HaeIII	GGCC	3 cut(s)	24, 404, 494
HapII	CCGG	7 cut(s)	34, 95, 179, 273, 336, 405, 483
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	210, 242, 433
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	192, 418
Hin6I	GCGC	3 cut(s)	208, 240, 431
HinP1I	GCGC	3 cut(s)	208, 240, 431
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	4 cut(s)	100, 154, 261, 371
HpaII	CCGG	7 cut(s)	34, 95, 179, 273, 336, 405, 483
HphI	GGTGA	3 cut(s)	163, 325, 409
Hpy166II	GTNNAC	3 cut(s)	145, 313, 459
Hpy188I	TCNGA	4 cut(s)	260, 303, 349, 361
Hpy188III	TCNNGA	3 cut(s)	158, 227, 533
Hpy8I	GTNNAC	3 cut(s)	145, 313, 459
Hpy99I	CGWCG	3 cut(s)	281, 454, 457
HpyAV	CCTTC	2 cut(s)	335, 394
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 401
HpyF3I	CTNAG	3 cut(s)	164, 300, 358
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	2 cut(s)	192, 418
HspAI	GCGC	3 cut(s)	208, 240, 431
KasI	GGCGCC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	167, 330, 349, 436
LmnI	GCTCC	2 cut(s)	215, 247
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	455
MalI	GATC	4 cut(s)	169, 332, 351, 438
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	4 cut(s)	167, 330, 349, 436
MboII	GAAGA	2 cut(s)	490, 548
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	179, 285
MluCI	AATT	2 cut(s)	70, 519
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	109, 163
MnlI	CCTC	9 cut(s)	41, 133, 227, 231, 234, 255, 258, 266, 276
MspI	CCGG	7 cut(s)	34, 95, 179, 273, 336, 405, 483
MspR9I	CCNGG	3 cut(s)	95, 96, 179
MvnI	CGCG	2 cut(s)	149, 159
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 401
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	3 cut(s)	95, 96, 179
NdeII	GATC	4 cut(s)	167, 330, 349, 436
NlaIII	CATG	2 cut(s)	192, 418
NlaIV	GGNNCC	2 cut(s)	176, 432
NmeAIII	GCCGAG	1 cut(s)	506
NruI	TCGCGA	1 cut(s)	159
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	261, 371
PinAI	ACCGGT	1 cut(s)	482
PkrI	GCNGC	5 cut(s)	7, 16, 127, 292, 493
PleI	GAGTC	2 cut(s)	108, 162
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	2 cut(s)	108, 162
PshAI	GACNNNNGTC	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	176, 432
PspPI	GGNCC	1 cut(s)	22
PspXI	VCTCGAGB	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	167
RruI	TCGCGA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	6, 15, 126, 291, 492
Sau3AI	GATC	4 cut(s)	167, 330, 349, 436
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	2 cut(s)	109, 163
ScrFI	CCNGG	3 cut(s)	95, 96, 179
SduI	GDGCHC	2 cut(s)	179, 285
SetI	ASST	7 cut(s)	33, 144, 346, 366, 379, 458, 548
SfoI	GGCGCC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	9
SgrAI	CRCCGGYG	2 cut(s)	272, 335
SlaI	CTCGAG	1 cut(s)	9
SmaI	CCCGGG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	70, 519
SsiI	CCGC	8 cut(s)	14, 125, 149, 213, 291, 316, 395, 491
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	93, 94, 177
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	10
TasI	AATT	2 cut(s)	70, 519
TauI	GCSGC	4 cut(s)	17, 128, 293, 494
TfiI	GAWTC	2 cut(s)	261, 371
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	518
TspMI	CCCGGG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	519
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	9
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	144, 312
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.