Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

22362223 .. 22362855

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTGCTCCGGCGGCTTCGAGCCACCACCTCCGGCTTCGCTCTGTCTCTATCTCTATCTCTCTATCGCAAGCCAATTCTCCTGCACCGGCTGACTGCCCGGGGAGTCGCGAACCGAGATTGGAAAGTGCGGTGACAACACTAGAGCTCTCCGCGGTGAGTCGCGAACTGAGACCTTGGTGCCCGGCGCCGACATGCGTCTGCTCTCTATGGCGCTCTGCCCTCCCTCCTCTAGACCCAATCGGCCCTCCTCCTCTCCCCCTCGGATTCCCTCATGCCGGCGACGAGCCCCCTGCCACCGTCTCTCAGATCACCGTCTACCGCTTGCAGTCGCTGATCACCGGCGAAGGTTTAGATCACTACTCAGAGCTTGTGGAATCAGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCTCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGCGGCCAAGGGAATGAACGCCATGCTGGAAATTTGCTCGGCTCTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

185

Amino Acids

19.81

Weight (kDa)

5.01

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	119 - 170	7.9e-07	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	180, 187
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	3 cut(s)	111, 155, 165
AciI	CCGC	7 cut(s)	14, 131, 153, 155, 322, 401, 497
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	488
AluBI	AGCT	2 cut(s)	148, 370
AluI	AGCT	2 cut(s)	148, 370
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	4 cut(s)	52, 166, 307, 408
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	3 cut(s)	244, 408, 498
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	525
AsiGI	ACCGGT	1 cut(s)	488
AspLEI	GCGC	3 cut(s)	190, 216, 439
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	3 cut(s)	101, 102, 185
AsuHPI	GGTGA	4 cut(s)	145, 169, 304, 331
AvaI	CYCGRG	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	185
BanI	GGYRCC	2 cut(s)	180, 187
BanII	GRGCYC	2 cut(s)	150, 291
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	3 cut(s)	101, 102, 185
BcoDI	GTCTC	4 cut(s)	52, 166, 307, 408
BfaI	CTAG	2 cut(s)	143, 233
BfoI	RGCGCY	3 cut(s)	191, 217, 440
BisI	GCNGC	3 cut(s)	6, 15, 498
BlsI	GCNGC	3 cut(s)	7, 16, 499
Bme1390I	CCNGG	3 cut(s)	101, 102, 185
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	182, 189
BmrFI	CCNGG	3 cut(s)	101, 102, 185
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	101, 102, 185
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	6 cut(s)	100, 101, 153, 176, 262, 501
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	4 cut(s)	88, 278, 341, 488
BseDI	CCNNGG	6 cut(s)	100, 101, 153, 176, 262, 501
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	3 cut(s)	161, 320, 378
BseRI	GAGGAG	3 cut(s)	219, 240, 243
BseSI	GKGCMC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	111, 155, 165
BshFI	GGCC	3 cut(s)	246, 410, 500
BshNI	GGYRCC	2 cut(s)	180, 187
BshTI	ACCGGT	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	9 cut(s)	11, 34, 89, 101, 185, 279, 342, 411, 489
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	4 cut(s)	52, 166, 307, 408
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	246, 410, 500
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	3 cut(s)	150, 185, 291
Bsp143I	GATC	4 cut(s)	309, 336, 355, 442
Bsp68I	TCGCGA	2 cut(s)	111, 165
BspACI	CCGC	7 cut(s)	14, 131, 153, 155, 322, 401, 497
BspANI	GGCC	3 cut(s)	246, 410, 500
BspCNI	CTCAG	3 cut(s)	162, 319, 377
BspFNI	CGCG	3 cut(s)	111, 155, 165
BspLI	GGNNCC	2 cut(s)	182, 189
BspT107I	GGYRCC	2 cut(s)	180, 187
BspTNI	GGTCTC	1 cut(s)	166
BsrFI	RCCGGY	4 cut(s)	88, 278, 341, 488
BssAI	RCCGGY	4 cut(s)	88, 278, 341, 488
BssECI	CCNNGG	6 cut(s)	100, 101, 153, 176, 262, 501
BssMI	GATC	4 cut(s)	309, 336, 355, 442
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	2 cut(s)	176, 501
Bst4CI	ACNGT	2 cut(s)	301, 316
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	72, 280, 326
BstDEI	CTNAG	3 cut(s)	170, 306, 364
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	3 cut(s)	111, 155, 165
BstH2I	RGCGCY	3 cut(s)	191, 217, 440
BstHHI	GCGC	3 cut(s)	190, 216, 439
BstKTI	GATC	4 cut(s)	312, 339, 358, 445
BstMAI	GTCTC	4 cut(s)	52, 166, 307, 408
BstMBI	GATC	4 cut(s)	309, 336, 355, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 398, 407
BstNSI	RCATGY	1 cut(s)	198
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	99, 100, 183
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	3 cut(s)	111, 155, 165
BstV2I	GAAGAC	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	246, 410, 500
BtgI	CCRYGG	1 cut(s)	153
BtuMI	TCGCGA	2 cut(s)	111, 165
Cac8I	GCNNGC	3 cut(s)	72, 280, 326
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	3 cut(s)	190, 216, 439
Cfr10I	RCCGGY	4 cut(s)	88, 278, 341, 488
Cfr13I	GGNCC	1 cut(s)	245
Cfr42I	CCGCGG	1 cut(s)	156
Cfr9I	CCCGGG	1 cut(s)	100
CseI	GACGC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	488
CviAII	CATG	4 cut(s)	195, 275, 421, 517
DdeI	CTNAG	3 cut(s)	170, 306, 364
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	4 cut(s)	311, 338, 357, 444
DpnII	GATC	4 cut(s)	309, 336, 355, 442
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	176, 501
Eco24I	GRGCYC	2 cut(s)	150, 291
Eco31I	GGTCTC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	176, 501
EcoT38I	GRGCYC	2 cut(s)	150, 291
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	176, 501
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	4 cut(s)	198, 278, 424, 520
FaiI	YATR	6 cut(s)	196, 211, 276, 422, 518, 549
FatI	CATG	4 cut(s)	194, 274, 420, 516
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	6, 15, 498
FriOI	GRGCYC	2 cut(s)	150, 291
Fsp4HI	GCNGC	3 cut(s)	6, 15, 498
FspBI	CTAG	2 cut(s)	143, 233
GlaI	GCGC	3 cut(s)	189, 215, 438
GluI	GCNGC	3 cut(s)	6, 15, 498
HaeII	RGCGCY	3 cut(s)	191, 217, 440
HaeIII	GGCC	3 cut(s)	246, 410, 500
HapII	CCGG	9 cut(s)	11, 34, 89, 101, 185, 279, 342, 411, 489
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	3 cut(s)	190, 216, 439
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	198, 278, 424, 520
Hin6I	GCGC	3 cut(s)	188, 214, 437
HinP1I	GCGC	3 cut(s)	188, 214, 437
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	106, 160, 267, 377
HpaII	CCGG	9 cut(s)	11, 34, 89, 101, 185, 279, 342, 411, 489
HphI	GGTGA	4 cut(s)	145, 169, 304, 331
Hpy166II	GTNNAC	2 cut(s)	319, 465
Hpy188I	TCNGA	3 cut(s)	266, 309, 367
Hpy188III	TCNNGA	4 cut(s)	110, 164, 233, 539
Hpy8I	GTNNAC	2 cut(s)	319, 465
Hpy99I	CGWCG	3 cut(s)	287, 460, 463
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	301, 316
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	2 cut(s)	86, 328
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 398, 407
HpyF3I	CTNAG	3 cut(s)	170, 306, 364
HpySE526I	ACGT	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	198, 278, 424, 520
HspAI	GCGC	3 cut(s)	188, 214, 437
KasI	GGCGCC	1 cut(s)	187
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	336
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	309, 336, 355, 442
LmnI	GCTCC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	143, 233
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	4 cut(s)	311, 338, 357, 444
MboI	GATC	4 cut(s)	309, 336, 355, 442
MboII	GAAGA	2 cut(s)	496, 554
MhlI	GDGCHC	3 cut(s)	150, 185, 291
MluCI	AATT	2 cut(s)	76, 525
Mly113I	GGCGCC	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	115, 169
MroNI	GCCGGC	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	9 cut(s)	11, 34, 89, 101, 185, 279, 342, 411, 489
MspR9I	CCNGG	3 cut(s)	101, 102, 185
MvnI	CGCG	3 cut(s)	111, 155, 165
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 398, 407
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	188
NciI	CCSGG	3 cut(s)	101, 102, 185
NdeII	GATC	4 cut(s)	309, 336, 355, 442
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	4 cut(s)	198, 278, 424, 520
NlaIV	GGNNCC	2 cut(s)	182, 189
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	133
NruI	TCGCGA	2 cut(s)	111, 165
NspI	RCATGY	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	267, 377
PinAI	ACCGGT	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	7, 16, 499
PleI	GAGTC	2 cut(s)	114, 168
PluTI	GGCGCC	1 cut(s)	191
PpsI	GAGTC	2 cut(s)	114, 168
PshAI	GACNNNNGTC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	182, 189
PspPI	GGNCC	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	334
RruI	TCGCGA	2 cut(s)	111, 165
SacI	GAGCTC	1 cut(s)	150
SacII	CCGCGG	1 cut(s)	156
SatI	GCNGC	3 cut(s)	6, 15, 498
Sau3AI	GATC	4 cut(s)	309, 336, 355, 442
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	115, 169
ScrFI	CCNGG	3 cut(s)	101, 102, 185
SduI	GDGCHC	3 cut(s)	150, 185, 291
SetI	ASST	8 cut(s)	33, 150, 178, 352, 372, 385, 464, 554
SfoI	GGCGCC	1 cut(s)	189
Sfr303I	CCGCGG	1 cut(s)	156
SgrAI	CRCCGGYG	1 cut(s)	341
SgrBI	CCGCGG	1 cut(s)	156
SmaI	CCCGGG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	76, 525
SsiI	CCGC	7 cut(s)	14, 131, 153, 155, 322, 401, 497
SspDI	GGCGCC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	143, 233
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	99, 100, 183
StyI	CCWWGG	2 cut(s)	176, 501
TaaI	ACNGT	2 cut(s)	301, 316
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	2 cut(s)	20, 441
TasI	AATT	2 cut(s)	76, 525
TauI	GCSGC	2 cut(s)	17, 500
TfiI	GAWTC	2 cut(s)	267, 377
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	524
TspMI	CCCGGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	525
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	198
XmaI	CCCGGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	2 cut(s)	143, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.