Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

16407806 .. 16408486

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG199200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTGAGAAAGATCGGAAAATTCCTCGAAACCCGCGTCGACGTTCTCCGATTCCGCAGCGTCTGCTCTCTCTGGCGCTCCGCCCTCCCTTCTCTAGACCCAATCGGCGATCCTCCTCTCCCCCTCGGATTCCCTCACGCCGGTGACGAGCCCCCTGCCGCCGTCTCTCAGACCACCGTCTACCGCTTGCAGTCGTTGATCACCGGCGAAGGTTCAGATCATTACTCGGAGTTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACTGGTGTGGCGGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTCTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

138

Amino Acids

15.25

Weight (kDa)

4.96

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	69 - 125	9.2e-08	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccI	GTMKAC	2 cut(s)	39, 180
AccII	CGCG	1 cut(s)	36
AciI	CCGC	7 cut(s)	34, 55, 81, 159, 184, 263, 359
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	20, 387
AcyI	GRCGYC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	140
AleI	CACNNNNGTG	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	169, 270
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	63
AoxI	GGCC	2 cut(s)	270, 360
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	2 cut(s)	20, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	2 cut(s)	78, 301
AsuHPI	GGTGA	3 cut(s)	16, 155, 193
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	146, 362
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	169, 270
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	2 cut(s)	79, 302
BisI	GCNGC	3 cut(s)	58, 159, 360
BlsI	GCNGC	3 cut(s)	59, 160, 361
BmiI	GGNNCC	1 cut(s)	300
BoxI	GACNNNNGTC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	124, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	2 cut(s)	140, 203
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	124, 363
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	272, 362
BshNI	GGYRCC	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	141, 204, 273
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	169, 270
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	272, 362
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	12, 109, 198, 217, 304
BspACI	CCGC	7 cut(s)	34, 55, 81, 159, 184, 263, 359
BspANI	GGCC	2 cut(s)	272, 362
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	298
BsrFI	RCCGGY	2 cut(s)	140, 203
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	2 cut(s)	140, 203
BssECI	CCNNGG	2 cut(s)	124, 363
BssMI	GATC	5 cut(s)	12, 109, 198, 217, 304
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	79, 302
BstHHI	GCGC	2 cut(s)	78, 301
BstKTI	GATC	5 cut(s)	15, 112, 201, 220, 307
BstMAI	GTCTC	2 cut(s)	169, 270
BstMBI	GATC	5 cut(s)	12, 109, 198, 217, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 260, 269
BstPAI	GACNNNNGTC	1 cut(s)	176
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	272, 362
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	63
CfoI	GCGC	2 cut(s)	78, 301
Cfr10I	RCCGGY	2 cut(s)	140, 203
CseI	GACGC	2 cut(s)	25, 49
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	5 cut(s)	151, 272, 313, 362, 398
CviKI_1	RGCY	5 cut(s)	151, 272, 313, 362, 398
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	5 cut(s)	14, 111, 200, 219, 306
DpnII	GATC	5 cut(s)	12, 109, 198, 217, 304
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	286
FaiI	YATR	2 cut(s)	284, 411
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	2 cut(s)	39, 180
Fnu4HI	GCNGC	3 cut(s)	58, 159, 360
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	58, 159, 360
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	2 cut(s)	77, 300
GluI	GCNGC	3 cut(s)	58, 159, 360
HaeII	RGCGCY	2 cut(s)	79, 302
HaeIII	GGCC	2 cut(s)	272, 362
HapII	CCGG	3 cut(s)	141, 204, 273
HgaI	GACGC	2 cut(s)	25, 49
HhaI	GCGC	2 cut(s)	78, 301
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	2 cut(s)	76, 299
HinP1I	GCGC	2 cut(s)	76, 299
HincII	GTYRAC	2 cut(s)	40, 327
HindII	GTYRAC	2 cut(s)	40, 327
HinfI	GANTC	3 cut(s)	51, 129, 239
HpaII	CCGG	3 cut(s)	141, 204, 273
HphI	GGTGA	3 cut(s)	16, 155, 193
Hpy166II	GTNNAC	3 cut(s)	40, 181, 327
Hpy188I	TCNGA	6 cut(s)	17, 50, 128, 171, 217, 229
Hpy188III	TCNNGA	2 cut(s)	95, 401
Hpy8I	GTNNAC	3 cut(s)	40, 181, 327
Hpy99I	CGWCG	4 cut(s)	41, 44, 322, 325
HpyAV	CCTTC	2 cut(s)	99, 203
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	42, 323
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 260, 269
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	42, 323
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	2 cut(s)	76, 299
KasI	GGCGCC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	12, 109, 198, 217, 304
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	42, 323
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	5 cut(s)	14, 111, 200, 219, 306
MboI	GATC	5 cut(s)	12, 109, 198, 217, 304
MboII	GAAGA	2 cut(s)	358, 416
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	20, 387
Mly113I	GGCGCC	1 cut(s)	299
MnlI	CCTC	7 cut(s)	35, 95, 123, 126, 134, 144, 262
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	3 cut(s)	141, 204, 273
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	63, 260, 269
NarI	GGCGCC	1 cut(s)	299
NdeII	GATC	5 cut(s)	12, 109, 198, 217, 304
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 144
PfeI	GAWTC	3 cut(s)	51, 129, 239
PkrI	GCNGC	3 cut(s)	59, 160, 361
PluTI	GGCGCC	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	38
SatI	GCNGC	3 cut(s)	58, 159, 360
Sau3AI	GATC	5 cut(s)	12, 109, 198, 217, 304
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	4 cut(s)	45, 214, 326, 416
SfoI	GGCGCC	1 cut(s)	300
SgrAI	CRCCGGYG	2 cut(s)	140, 203
SgrDI	CGTCGACG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	20, 387
SsiI	CCGC	7 cut(s)	34, 55, 81, 159, 184, 263, 359
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	45, 326
TaqI	TCGA	2 cut(s)	27, 39
TasI	AATT	2 cut(s)	20, 387
TauI	GCSGC	2 cut(s)	161, 362
TfiI	GAWTC	3 cut(s)	51, 129, 239
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	386
XapI	RAATTY	2 cut(s)	20, 387
XbaI	TCTAGA	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	39, 180
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.