Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

40323743 .. 40324652

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG237800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAACATGCCCATTGGACGGTGGTGAGGGCTGGAGCCGATGGGGAGATGACGGTAGAGAAGAGGTGCAGCAGTGAGGTCATAGATGAAGAAGAAGGAGCTGTGAGAGAAGAGATGGGAAAGCCAATCTCTAGAGAGAAGAGATCTGGCTATTCCCTAGATGTTCATCCATTCATTAACAAGAAACTTCATACGGCGCCATATTACGGATTAGTTTGGCGTGGAGACCAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.91

Weight (kDa)

6.41

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	19, 206
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	2 cut(s)	35, 109
BceAI	ACGGC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	2 cut(s)	132, 158
BfoI	RGCGCY	1 cut(s)	200
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	37, 198
BpmI	CTGGAG	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 206
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	165
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	19, 206
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	19, 206
BsmAI	GTCTC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	37, 198
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	22, 55
Bst6I	CTCTTC	3 cut(s)	56, 105, 134
BstACI	GRCGYC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	5 cut(s)	32, 38, 101, 124, 150
CviKI_1	RGCY	5 cut(s)	32, 38, 101, 124, 150
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	56, 105, 134
EarI	CTCTTC	3 cut(s)	56, 105, 134
Eco31I	GGTCTC	1 cut(s)	219
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaeI	CATG	1 cut(s)	11
FaiI	YATR	5 cut(s)	9, 83, 192, 202, 235
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	2 cut(s)	132, 158
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	200
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HphI	GGTGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	2 cut(s)	22, 55
HpyCH4V	TGCA	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	11
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	2 cut(s)	35, 98
LpnPI	CCDG	2 cut(s)	18, 132
Lsp1109I	GCAGC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	132, 158
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	5 cut(s)	73, 101, 104, 122, 151
MflI	RGATCY	1 cut(s)	143
Mly113I	GGCGCC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	21, 57, 70
MseI	TTAA	1 cut(s)	177
NarI	GGCGCC	1 cut(s)	197
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	37, 198
NspI	RCATGY	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	71
PluTI	GGCGCC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	37, 198
PsuI	RGATCY	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	1 cut(s)	143
SetI	ASST	3 cut(s)	68, 81, 103
SfoI	GGCGCC	1 cut(s)	198
SgeI	CNNG	7 cut(s)	20, 45, 144, 159, 170, 193, 233
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	132, 158
TaaI	ACNGT	2 cut(s)	22, 55
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	69
TspDTI	ATGAA	5 cut(s)	17, 102, 155, 163, 179
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	131
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	2 cut(s)	132, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.