Rmu_sc0005263.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005263.1
OG0008903
Physical Location & Seq
Forward (+)
60872 .. 63089
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005263.1_g000012.1.cds

Sequence Viewer

Length: 543 bp
atgccttcttggggattggcctatgggctaagtatgccttggagccatgacagtcgtcaagaagagaacatggtagccttgttggatggtaaaggcctcaaggcctcgatggcttgtcaggtgatgtccataaggcgaagtatgagggcatgtgttgcccaagagcccagtgggttgcacaagagataccatcgaggcaaagatacaacggcaggtggtgtccacgagccgagatgcacacgggtcagtaatgggctggcgcaagacgagatgacacaaaagcccatcggttgggcgagtgtcttggaagacaaccatgacacagggaagcgatcgattagtcacaagataccagaagctggcgctcgtgcaatcagctgcgagttcgtgcagccagcgccatctatcgtacagccgacagcgagttcgtgcagcgagctcttagttcctttacgtcaccttcgtgcagctaggtcggcgttccggttcgtgcagcgagctaggagatcgcaccatccatcactggtggcgatttcgtgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.78

Weight (kDa)

9.69

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 203
AccB7I CCANNNNNTGG 2 cut(s) 291, 359
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 3 cut(s) 11, 291, 359
AleI CACNNNNGTG 1 cut(s) 462
AluBI AGCT 5 cut(s) 359, 378, 439, 470, 500
AluI AGCT 5 cut(s) 359, 378, 439, 470, 500
Alw21I GWGCWC 1 cut(s) 441
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 3 cut(s) 18, 94, 102
ApeKI GCWGC 5 cut(s) 378, 391, 432, 467, 493
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspLEI GCGC 3 cut(s) 262, 365, 400
AsuHPI GGTGA 2 cut(s) 133, 449
BanII GRGCYC 2 cut(s) 168, 441
BauI CACGAG 2 cut(s) 224, 366
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 365, 403, 444, 479, 505
BccI CCATC 7 cut(s) 80, 103, 198, 293, 409, 522, 526
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BfaI CTAG 2 cut(s) 471, 501
BfoI RGCGCY 2 cut(s) 366, 401
BfuAI ACCTGC 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 5 cut(s) 379, 392, 433, 468, 494
BlsI GCNGC 5 cut(s) 380, 393, 434, 469, 495
BmiI GGNNCC 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 483
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 291, 359
Bse1I ACTGG 2 cut(s) 168, 528
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 91, 514
BseLI CCNNNNNNNGG 3 cut(s) 11, 291, 359
BseNI ACTGG 2 cut(s) 168, 528
BseXI GCAGC 5 cut(s) 365, 403, 444, 479, 505
BsgI GTGCAG 4 cut(s) 410, 451, 486, 512
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 20, 96, 104
BshVI ATCGAT 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 3 cut(s) 11, 291, 359
BsnI GGCC 3 cut(s) 20, 96, 104
Bsp1286I GDGCHC 2 cut(s) 168, 441
Bsp143I GATC 2 cut(s) 332, 506
BspANI GGCC 3 cut(s) 20, 96, 104
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 168, 528
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 332, 506
BssSI CACGAG 2 cut(s) 224, 366
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 2 cut(s) 224, 366
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 5 cut(s) 258, 361, 396, 437, 498
BstDEI CTNAG 2 cut(s) 29, 442
BstF5I GGATG 2 cut(s) 91, 514
BstH2I RGCGCY 2 cut(s) 366, 401
BstHHI GCGC 3 cut(s) 262, 365, 400
BstKTI GATC 2 cut(s) 335, 509
BstMBI GATC 2 cut(s) 332, 506
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 5 cut(s) 34, 110, 155, 397, 476
BstNSI RCATGY 1 cut(s) 153
BstPAI GACNNNNGTC 1 cut(s) 54
BstV1I GCAGC 5 cut(s) 365, 403, 444, 479, 505
BstV2I GAAGAC 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 335
BsuRI GGCC 3 cut(s) 20, 96, 104
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 2 cut(s) 91, 514
BtsIMutI CAGTG 2 cut(s) 175, 521
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 5 cut(s) 258, 361, 396, 437, 498
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 3 cut(s) 262, 365, 400
ClaI ATCGAT 1 cut(s) 335
Csp6I GTAC 1 cut(s) 410
CviAII CATG 4 cut(s) 47, 70, 150, 317
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 29, 442
DpnI GATC 2 cut(s) 334, 508
DpnII GATC 2 cut(s) 332, 506
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 2 cut(s) 96, 104
Eco24I GRGCYC 2 cut(s) 168, 441
Eco53kI GAGCTC 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 2 cut(s) 168, 441
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 4 cut(s) 50, 73, 153, 320
FaiI YATR 8 cut(s) 24, 35, 48, 71, 131, 143, 151, 318
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 4 cut(s) 46, 69, 149, 316
Fnu4HI GCNGC 5 cut(s) 379, 392, 433, 468, 494
FokI GGATG 2 cut(s) 98, 501
FriOI GRGCYC 2 cut(s) 168, 441
Fsp4HI GCNGC 5 cut(s) 379, 392, 433, 468, 494
FspBI CTAG 2 cut(s) 471, 501
GlaI GCGC 3 cut(s) 261, 364, 399
GluI GCNGC 5 cut(s) 379, 392, 433, 468, 494
HaeII RGCGCY 2 cut(s) 366, 401
HaeIII GGCC 3 cut(s) 20, 96, 104
HapII CCGG 1 cut(s) 484
HhaI GCGC 3 cut(s) 262, 365, 400
Hin1II CATG 4 cut(s) 50, 73, 153, 320
Hin6I GCGC 3 cut(s) 260, 363, 398
HinP1I GCGC 3 cut(s) 260, 363, 398
HpaII CCGG 1 cut(s) 484
HphI GGTGA 2 cut(s) 133, 449
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 15, 470
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 7 cut(s) 178, 237, 371, 391, 432, 467, 493
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 110, 155, 397, 476
HpyF3I CTNAG 2 cut(s) 29, 442
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 4 cut(s) 50, 73, 153, 320
HspAI GCGC 3 cut(s) 260, 363, 398
Kzo9I GATC 2 cut(s) 332, 506
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 5 cut(s) 365, 403, 444, 479, 505
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 471, 501
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 341, 455
MalI GATC 2 cut(s) 334, 508
MboI GATC 2 cut(s) 332, 506
MboII GAAGA 2 cut(s) 74, 320
MhlI GDGCHC 2 cut(s) 168, 441
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 107, 115, 138, 188
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 1 cut(s) 484
MwoI GCNNNNNNNGC 5 cut(s) 34, 110, 155, 397, 476
NdeII GATC 2 cut(s) 332, 506
NlaIII CATG 4 cut(s) 50, 73, 153, 320
NlaIV GGNNCC 1 cut(s) 44
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 341, 455
NspI RCATGY 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 462
PaqCI CACCTGC 1 cut(s) 203
PceI AGGCCT 2 cut(s) 96, 104
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PflMI CCANNNNNTGG 2 cut(s) 291, 359
PkrI GCNGC 5 cut(s) 380, 393, 434, 469, 495
Ple19I CGATCG 1 cut(s) 335
PshAI GACNNNNGTC 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 359
PvuI CGATCG 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 378
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 441
SatI GCNGC 5 cut(s) 379, 392, 433, 468, 494
Sau3AI GATC 2 cut(s) 332, 506
SduI GDGCHC 2 cut(s) 168, 441
SfaNI GCATC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SseBI AGGCCT 2 cut(s) 96, 104
SspMI CTAG 2 cut(s) 471, 501
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 2 cut(s) 96, 104
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 457
TaqI TCGA 3 cut(s) 107, 193, 335
TscAI CASTG 2 cut(s) 175, 528
TseFI GTSAC 2 cut(s) 341, 455
TseI GCWGC 5 cut(s) 378, 391, 432, 467, 493
Tsp45I GTSAC 2 cut(s) 341, 455
TspRI CASTG 2 cut(s) 175, 528
Van91I CCANNNNNTGG 2 cut(s) 291, 359
XceI RCATGY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XspI CTAG 2 cut(s) 471, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.