Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000735.1

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

52910 .. 54157

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000735.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgatcgacgttctccgtgcaactaggttggagttccagttcgtgcagcaagcttggaggttgctccatccatcaccggcggcgagttcgtgctgcagcctaaacttcgattctggtgtgcttgcctgtgtgtctctcgagctccccccatctggaaatcaaacagcaccattgagctgggtttctcacagtgcaagtctacccggcgaagaaggaagaagagaatggagagcagccggatctctcacagtaccgagggcaatagacgtctattggggcagcaaatcttttcagtgggagggtgccggtgaccggaatccggcggccggtgatcggattccggtgaaagttagccggaatcctgcgacatgtgaccagattcaggcaaaagttggccagaatccggcggccggtgacggggctccgattggtgtgagccacacaacttgttgttgggctgttgtatcttggaggggacaagtcaagagatttctggtgcaccggcattgttccgcagagggcttgaatctccttaaagagagcgagatacccacgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.1

Weight (kDa)

8.22

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	4 cut(s)	80, 323, 407, 513
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	3 cut(s)	324, 394, 408
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	9 cut(s)	152, 312, 319, 326, 333, 382, 403, 410, 417
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	526
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	3 cut(s)	53, 142, 177
AluI	AGCT	3 cut(s)	53, 142, 177
Alw21I	GWGCWC	2 cut(s)	144, 501
Alw26I	GTCTC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	324, 394, 408
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	5 cut(s)	46, 93, 96, 233, 279
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	5 cut(s)	66, 320, 341, 355, 425
AvaI	CYCGRG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	144, 424
Bbv12I	GWGCWC	2 cut(s)	144, 501
BbvI	GCAGC	5 cut(s)	58, 80, 108, 245, 291
BccI	CCATC	3 cut(s)	75, 79, 157
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	8 cut(s)	47, 81, 94, 97, 234, 280, 324, 408
BlsI	GCNGC	8 cut(s)	48, 82, 95, 98, 235, 281, 325, 409
Bme1390I	CCNGG	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	304, 423
BmrFI	CCNGG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	2 cut(s)	312, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	9 cut(s)	152, 312, 319, 326, 333, 382, 403, 410, 417
Bse118I	RCCGGY	5 cut(s)	76, 305, 326, 410, 501
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	9 cut(s)	152, 312, 319, 326, 333, 382, 403, 410, 417
BseNI	ACTGG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	501
BseX3I	CGGCCG	2 cut(s)	324, 408
BseXI	GCAGC	5 cut(s)	58, 80, 108, 245, 291
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	65
Bsh1285I	CGRYCG	2 cut(s)	327, 411
BshFI	GGCC	3 cut(s)	326, 396, 410
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	327, 411
BsiHKAI	GWGCWC	2 cut(s)	144, 501
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	9 cut(s)	152, 312, 319, 326, 333, 382, 403, 410, 417
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	326, 396, 410
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	144, 424, 501
Bsp143I	GATC	3 cut(s)	3, 239, 331
BspACI	CCGC	4 cut(s)	80, 323, 407, 513
BspANI	GGCC	3 cut(s)	326, 396, 410
BspLI	GGNNCC	2 cut(s)	304, 423
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	5 cut(s)	76, 305, 326, 410, 501
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	5 cut(s)	76, 305, 326, 410, 501
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	3 cut(s)	3, 239, 331
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	191, 250
Bst6I	CTCTTC	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	51, 123
BstDEI	CTNAG	1 cut(s)	558
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	3 cut(s)	6, 242, 334
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	3, 239, 331
BstMCI	CGRYCG	2 cut(s)	327, 411
BstNSI	RCATGY	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	58, 80, 108, 245, 291
BstX2I	RGATCY	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	239
BstZI	CGGCCG	2 cut(s)	324, 408
BsuRI	GGCC	3 cut(s)	326, 396, 410
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	196, 299
Cac8I	GCNNGC	2 cut(s)	51, 123
Cfr10I	RCCGGY	5 cut(s)	76, 305, 326, 410, 501
Csp6I	GTAC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	428, 463
CviAII	CATG	1 cut(s)	369
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	3 cut(s)	5, 241, 333
DpnII	GATC	3 cut(s)	3, 239, 331
EaeI	YGGCCR	3 cut(s)	324, 394, 408
EagI	CGGCCG	2 cut(s)	324, 408
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	2 cut(s)	324, 408
Eco24I	GRGCYC	2 cut(s)	144, 424
Eco52I	CGGCCG	2 cut(s)	324, 408
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	308
EcoT38I	GRGCYC	2 cut(s)	144, 424
FaeI	CATG	1 cut(s)	372
FaiI	YATR	1 cut(s)	370
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	8 cut(s)	47, 81, 94, 97, 234, 280, 324, 408
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	2 cut(s)	144, 424
Fsp4HI	GCNGC	8 cut(s)	47, 81, 94, 97, 234, 280, 324, 408
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	8 cut(s)	47, 81, 94, 97, 234, 280, 324, 408
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	326, 396, 410
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	7 cut(s)	110, 316, 337, 358, 379, 400, 526
HphI	GGTGA	5 cut(s)	66, 320, 341, 355, 425
Hpy166II	GTNNAC	2 cut(s)	200, 499
Hpy188I	TCNGA	2 cut(s)	336, 426
Hpy188III	TCNNGA	3 cut(s)	137, 153, 484
Hpy8I	GTNNAC	2 cut(s)	200, 499
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	191, 250
HpyCH4IV	ACGT	2 cut(s)	9, 267
HpyCH4V	TGCA	5 cut(s)	20, 46, 96, 194, 499
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	2 cut(s)	9, 267
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	3, 239, 331
LmnI	GCTCC	3 cut(s)	69, 147, 427
Lsp1109I	GCAGC	5 cut(s)	58, 80, 108, 245, 291
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	9, 267
MaeIII	GTNAC	3 cut(s)	308, 371, 413
MalI	GATC	3 cut(s)	5, 241, 333
MboI	GATC	3 cut(s)	3, 239, 331
MboII	GAAGA	3 cut(s)	221, 228, 231
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	3 cut(s)	144, 424, 501
MlsI	TGGCCA	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	5 cut(s)	51, 249, 292, 465, 511
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	204
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	3 cut(s)	3, 239, 331
NlaIII	CATG	1 cut(s)	372
NlaIV	GGNNCC	2 cut(s)	304, 423
NmuCI	GTSAC	3 cut(s)	308, 371, 413
NspI	RCATGY	1 cut(s)	372
PaeR7I	CTCGAG	1 cut(s)	137
PciI	ACATGT	1 cut(s)	368
PfeI	GAWTC	7 cut(s)	110, 316, 337, 358, 379, 400, 526
PkrI	GCNGC	8 cut(s)	48, 82, 95, 98, 235, 281, 325, 409
PscI	ACATGT	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	304, 423
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	239
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	8 cut(s)	47, 81, 94, 97, 234, 280, 324, 408
Sau3AI	GATC	3 cut(s)	3, 239, 331
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	3 cut(s)	144, 424, 501
SetI	ASST	7 cut(s)	12, 29, 55, 62, 144, 179, 270
SfcI	CTRYAG	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	137
SgrAI	CRCCGGYG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	4 cut(s)	80, 323, 407, 513
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	191, 250
TaiI	ACGT	2 cut(s)	12, 270
TaqI	TCGA	3 cut(s)	6, 108, 138
TauI	GCSGC	3 cut(s)	83, 326, 410
TfiI	GAWTC	7 cut(s)	110, 316, 337, 358, 379, 400, 526
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	196, 299
TseFI	GTSAC	3 cut(s)	308, 371, 413
TseI	GCWGC	5 cut(s)	46, 93, 96, 233, 279
Tsp45I	GTSAC	3 cut(s)	308, 371, 413
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	196, 299
VneI	GTGCAC	1 cut(s)	497
XceI	RCATGY	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	24
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.