Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Reverse (-)

1727626 .. 1728087

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG024800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTGCTCCGGCGGTTTCGGGCCACCACCTCCGGCTTCGCTCTGTCTCTATCTCTCTATCGCAAGCCAATTCTCCGGCACCGGCTGACTGCCCAGGCGTCTGCTCTCTCTGGCGCTTCGCCCTCCCTCCTCTAGACCCAATCGGCGCTCCTCCTCTCCCCCTCGGATTCCCTCACGCCGGCGACGAGCCCCCTGCCGCCGTCTCTCAGACCACCGTCTACCGCTTGCAGTCGCTGATCACCGGCGAAGGTTCAGATCACTACTCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGCGGCCAAGGGAATGAACGCAGCTCCGGTCGATCCGATCTGGTGCCCAGAGGAGGCGAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

153

Amino Acids

16.26

Weight (kDa)

4.86

Isoelectric Point (pI)

65.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	82 - 136	1.4e-07	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	79, 337, 438
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	5 cut(s)	14, 198, 223, 302, 398
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	399
AcyI	GRCGYC	2 cut(s)	99, 338
AfiI	CCNNNNNNNGG	2 cut(s)	179, 448
AgeI	ACCGGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	271, 419
AluI	AGCT	2 cut(s)	271, 419
Alw26I	GTCTC	3 cut(s)	52, 208, 309
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	3 cut(s)	22, 309, 399
ApeKI	GCWGC	2 cut(s)	5, 416
AsiGI	ACCGGT	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	117, 149, 340
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	443
BanI	GGYRCC	3 cut(s)	79, 337, 438
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	52, 208, 309
BfaI	CTAG	1 cut(s)	134
BfoI	RGCGCY	3 cut(s)	118, 150, 341
BisI	GCNGC	4 cut(s)	6, 198, 399, 417
BlsI	GCNGC	4 cut(s)	7, 199, 400, 418
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	81, 339, 440
BmrFI	CCNGG	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	392
BsaHI	GRCGYC	2 cut(s)	99, 338
BsaJI	CCNNGG	3 cut(s)	94, 163, 402
BsaWI	WCCGGW	2 cut(s)	389, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 448
Bse118I	RCCGGY	4 cut(s)	82, 179, 242, 389
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	94, 163, 402
BseLI	CCNNNNNNNGG	2 cut(s)	179, 448
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	4 cut(s)	120, 141, 144, 461
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	24, 311, 401
BshNI	GGYRCC	3 cut(s)	79, 337, 438
BshTI	ACCGGT	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	426
BsiSI	CCGG	9 cut(s)	11, 34, 77, 83, 180, 243, 312, 390, 422
BslI	CCNNNNNNNGG	2 cut(s)	179, 448
BsmAI	GTCTC	3 cut(s)	52, 208, 309
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	24, 311, 401
Bsp1286I	GDGCHC	2 cut(s)	192, 443
Bsp143I	GATC	5 cut(s)	237, 256, 343, 427, 432
BspACI	CCGC	5 cut(s)	14, 198, 223, 302, 398
BspANI	GGCC	3 cut(s)	24, 311, 401
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	81, 339, 440
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	3 cut(s)	79, 337, 438
BsrFI	RCCGGY	4 cut(s)	82, 179, 242, 389
BssAI	RCCGGY	4 cut(s)	82, 179, 242, 389
BssECI	CCNNGG	3 cut(s)	94, 163, 402
BssMI	GATC	5 cut(s)	237, 256, 343, 427, 432
BssNI	GRCGYC	2 cut(s)	99, 338
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	2 cut(s)	99, 338
BstC8I	GCNNGC	3 cut(s)	66, 181, 227
BstDEI	CTNAG	1 cut(s)	207
BstH2I	RGCGCY	3 cut(s)	118, 150, 341
BstHHI	GCGC	3 cut(s)	117, 149, 340
BstKTI	GATC	5 cut(s)	240, 259, 346, 430, 435
BstMAI	GTCTC	3 cut(s)	52, 208, 309
BstMBI	GATC	5 cut(s)	237, 256, 343, 427, 432
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 299, 308
BstNI	CCWGG	1 cut(s)	96
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	24, 311, 401
Cac8I	GCNNGC	3 cut(s)	66, 181, 227
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	3 cut(s)	117, 149, 340
Cfr10I	RCCGGY	4 cut(s)	82, 179, 242, 389
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	207
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	5 cut(s)	239, 258, 345, 429, 434
DpnII	GATC	5 cut(s)	237, 256, 343, 427, 432
EaeI	YGGCCR	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	192
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	1 cut(s)	325
FaiI	YATR	1 cut(s)	323
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	6, 198, 399, 417
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	6, 198, 399, 417
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	3 cut(s)	116, 148, 339
GluI	GCNGC	4 cut(s)	6, 198, 399, 417
HaeII	RGCGCY	3 cut(s)	118, 150, 341
HaeIII	GGCC	3 cut(s)	24, 311, 401
HapII	CCGG	9 cut(s)	11, 34, 77, 83, 180, 243, 312, 390, 422
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	3 cut(s)	117, 149, 340
Hin1I	GRCGYC	2 cut(s)	99, 338
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	3 cut(s)	115, 147, 338
HinP1I	GCGC	3 cut(s)	115, 147, 338
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	168, 278, 456
HpaII	CCGG	9 cut(s)	11, 34, 77, 83, 180, 243, 312, 390, 422
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	220, 366
Hpy188I	TCNGA	6 cut(s)	167, 210, 256, 268, 432, 461
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	220, 366
Hpy99I	CGWCG	3 cut(s)	188, 361, 364
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 299, 308
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	362
Hsp92I	GRCGYC	2 cut(s)	99, 338
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	3 cut(s)	115, 147, 338
KasI	GGCGCC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	237, 256, 343, 427, 432
LmnI	GCTCC	4 cut(s)	13, 154, 268, 424
Lsp1109I	GCAGC	1 cut(s)	428
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	362
MalI	GATC	5 cut(s)	239, 258, 345, 429, 434
MboI	GATC	5 cut(s)	237, 256, 343, 427, 432
MboII	GAAGA	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	192, 443
MluCI	AATT	1 cut(s)	70
Mly113I	GGCGCC	1 cut(s)	338
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MspI	CCGG	9 cut(s)	11, 34, 77, 83, 180, 243, 312, 390, 422
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	11, 299, 308
NaeI	GCCGGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	338
NdeII	GATC	5 cut(s)	237, 256, 343, 427, 432
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	3 cut(s)	81, 339, 440
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	168, 278, 456
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	7, 199, 400, 418
PluTI	GGCGCC	1 cut(s)	341
PshAI	GACNNNNGTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	81, 339, 440
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	235
SatI	GCNGC	4 cut(s)	6, 198, 399, 417
Sau3AI	GATC	5 cut(s)	237, 256, 343, 427, 432
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	192, 443
SetI	ASST	5 cut(s)	33, 253, 273, 365, 421
SfoI	GGCGCC	1 cut(s)	339
SgrAI	CRCCGGYG	2 cut(s)	179, 242
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	5 cut(s)	14, 198, 223, 302, 398
SspDI	GGCGCC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	70
TauI	GCSGC	2 cut(s)	200, 401
TfiI	GAWTC	3 cut(s)	168, 278, 456
TseI	GCWGC	2 cut(s)	5, 416
TspDTI	ATGAA	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.