Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Reverse (-)

12222645 .. 12223229

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTACTCCGGCGGCTTCAGGCCATCACCTCCGTCTTCGCTCTGTCTCTATCTCTCTATCGCAAGCCAATTCTCCGGCACCGGCTGACTGCCCAAAGGTCTGGGCGGCGAGTCGCGAACTCGTCTACTCTCTATGGCGCTCCGCCCTCCCTCCTCTAGACCCAATAGGCGCTCCTCCTCTCCCCTTCGGATTCCCTCACGCCGGCGACGAGCCCCCTGCCGCCTTCTCTCAGACCACCGTCTACCGCTTGCAGTCGCTGATCACCGATGAAGGTTCAGATCACTACTCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGGCGGAGACTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGCGGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTTTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

160

Amino Acids

17.2

Weight (kDa)

4.94

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	90 - 146	1.7e-07	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	79, 361
AccI	GTMKAC	2 cut(s)	126, 243
AccII	CGCG	1 cut(s)	117
AciI	CCGC	8 cut(s)	14, 107, 144, 222, 247, 326, 336, 422
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgeI	ACCGGT	1 cut(s)	413
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	52, 333
AlwNI	CAGNNNCTG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	22, 423
ApoI	RAATTY	1 cut(s)	450
AsiGI	ACCGGT	1 cut(s)	413
AspLEI	GCGC	3 cut(s)	141, 173, 364
AsuHPI	GGTGA	2 cut(s)	20, 256
BanI	GGYRCC	2 cut(s)	79, 361
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	2 cut(s)	29, 416
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	425
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	52, 333
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	3 cut(s)	142, 174, 365
BisI	GCNGC	4 cut(s)	15, 108, 222, 423
BlsI	GCNGC	4 cut(s)	16, 109, 223, 424
BmiI	GGNNCC	2 cut(s)	81, 363
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	29, 416
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	3 cut(s)	82, 203, 413
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	245
BseRI	GAGGAG	3 cut(s)	144, 165, 168
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	24, 425
BshNI	GGYRCC	2 cut(s)	79, 361
BshTI	ACCGGT	1 cut(s)	413
BsiSI	CCGG	5 cut(s)	11, 77, 83, 204, 414
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	52, 333
BsnI	GGCC	2 cut(s)	24, 425
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	261, 280, 367
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	8 cut(s)	14, 107, 144, 222, 247, 326, 336, 422
BspANI	GGCC	2 cut(s)	24, 425
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	81, 363
BspT107I	GGYRCC	2 cut(s)	79, 361
BsrFI	RCCGGY	3 cut(s)	82, 203, 413
BssAI	RCCGGY	3 cut(s)	82, 203, 413
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	261, 280, 367
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	66, 205, 251
BstDEI	CTNAG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	3 cut(s)	142, 174, 365
BstHHI	GCGC	3 cut(s)	141, 173, 364
BstKTI	GATC	3 cut(s)	264, 283, 370
BstMAI	GTCTC	2 cut(s)	52, 333
BstMBI	GATC	3 cut(s)	261, 280, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 323
BstPAI	GACNNNNGTC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	2 cut(s)	29, 416
BstXI	CCANNNNNNTGG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	24, 425
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	66, 205, 251
CaiI	CAGNNNCTG	1 cut(s)	259
CfoI	GCGC	3 cut(s)	141, 173, 364
Cfr10I	RCCGGY	3 cut(s)	82, 203, 413
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	363
DpnI	GATC	3 cut(s)	263, 282, 369
DpnII	GATC	3 cut(s)	261, 280, 367
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
EciI	GGCGGA	2 cut(s)	133, 351
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	216
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	349
FaiI	YATR	3 cut(s)	136, 347, 474
FatI	CATG	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	2 cut(s)	126, 243
Fnu4HI	GCNGC	4 cut(s)	15, 108, 222, 423
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	15, 108, 222, 423
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	3 cut(s)	140, 172, 363
GluI	GCNGC	4 cut(s)	15, 108, 222, 423
HaeII	RGCGCY	3 cut(s)	142, 174, 365
HaeIII	GGCC	2 cut(s)	24, 425
HapII	CCGG	5 cut(s)	11, 77, 83, 204, 414
HhaI	GCGC	3 cut(s)	141, 173, 364
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	3 cut(s)	139, 171, 362
HinP1I	GCGC	3 cut(s)	139, 171, 362
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	3 cut(s)	112, 192, 302
HpaII	CCGG	5 cut(s)	11, 77, 83, 204, 414
HphI	GGTGA	2 cut(s)	20, 256
Hpy166II	GTNNAC	3 cut(s)	127, 244, 390
Hpy188I	TCNGA	4 cut(s)	191, 234, 280, 292
Hpy188III	TCNNGA	2 cut(s)	116, 158
Hpy8I	GTNNAC	3 cut(s)	127, 244, 390
Hpy99I	CGWCG	3 cut(s)	212, 385, 388
HpyAV	CCTTC	3 cut(s)	196, 235, 266
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 323
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	3 cut(s)	139, 171, 362
KasI	GGCGCC	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	261, 280, 367
LmnI	GCTCC	3 cut(s)	146, 178, 292
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	386
MalI	GATC	3 cut(s)	263, 282, 369
MboI	GATC	3 cut(s)	261, 280, 367
MboII	GAAGA	3 cut(s)	29, 421, 479
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	70, 450
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	8 cut(s)	41, 158, 162, 165, 186, 189, 207, 325
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	203
MspI	CCGG	5 cut(s)	11, 77, 83, 204, 414
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	11, 323
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	362
NdeII	GATC	3 cut(s)	261, 280, 367
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	81, 363
NmeAIII	GCCGAG	1 cut(s)	437
NruI	TCGCGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	192, 302
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	16, 109, 223, 424
PleI	GAGTC	1 cut(s)	120
PluTI	GGCGCC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	120
PshAI	GACNNNNGTC	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	81, 363
PstNI	CAGNNNCTG	1 cut(s)	259
RruI	TCGCGA	1 cut(s)	117
SatI	GCNGC	4 cut(s)	15, 108, 222, 423
Sau3AI	GATC	3 cut(s)	261, 280, 367
SchI	GAGTC	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	6 cut(s)	33, 102, 277, 297, 389, 479
SfoI	GGCGCC	1 cut(s)	363
SgrAI	CRCCGGYG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	70, 450
SsiI	CCGC	8 cut(s)	14, 107, 144, 222, 247, 326, 336, 422
SspDI	GGCGCC	1 cut(s)	361
SspMI	CTAG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	389
TasI	AATT	2 cut(s)	70, 450
TauI	GCSGC	4 cut(s)	17, 110, 224, 425
TfiI	GAWTC	2 cut(s)	192, 302
TspDTI	ATGAA	2 cut(s)	285, 449
TspGWI	ACGGA	1 cut(s)	23
XapI	RAATTY	1 cut(s)	450
XbaI	TCTAGA	1 cut(s)	157
XmiI	GTMKAC	2 cut(s)	126, 243
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.