Rmu_sc0032693.1_g000001

Protein NRDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032693.1
OG0008903
Physical Location & Seq
Reverse (-)
850 .. 1158
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032693.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
atgatcgacattctctgtgcagctaggttggagttctggttcgtgcagcgagttcgaagtttgcctcatccatcgccggcagcaagttcatgctgcagatttcttgatgctgatgagtcactctcgggaactacagtagtggtcgaagaatcatgggaagatgaattgttacgcaagacttgggagtttaacaaattgacgagggagcatcctcatgatgagaaggtttggttggctttcgctcaattccaagacaaagttggggcagggaaggagcagtgggtgagcctggggagggcgaacccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NRDE-2

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

5.31

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 295
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 124
ApeKI GCWGC 4 cut(s) 20, 46, 80, 93
AsuHPI GGTGA 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 124
BbvI GCAGC 4 cut(s) 32, 58, 80, 92
BccI CCATC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 94, 132
BisI GCNGC 4 cut(s) 21, 47, 81, 94
BlsI GCNGC 4 cut(s) 22, 48, 82, 95
Bme1390I CCNGG 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 2 cut(s) 97, 217
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu14I TTCGAA 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 76
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 67, 208
BseLI CCNNNNNNNGG 1 cut(s) 295
BseXI GCAGC 4 cut(s) 32, 58, 80, 92
BsgI GTGCAG 2 cut(s) 39, 65
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 3
BspHI TCATGA 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 78
BstF5I GGATG 2 cut(s) 67, 208
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 2 cut(s) 94, 132
BstV1I GCAGC 4 cut(s) 32, 58, 80, 92
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 67, 208
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 76
CviAII CATG 3 cut(s) 90, 153, 215
CviJI RGCY 3 cut(s) 23, 236, 288
CviKI_1 RGCY 3 cut(s) 23, 236, 288
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 93, 156, 218
FaiI YATR 3 cut(s) 91, 154, 216
FatI CATG 3 cut(s) 89, 152, 214
Fnu4HI GCNGC 4 cut(s) 21, 47, 81, 94
FokI GGATG 2 cut(s) 54, 195
Fsp4HI GCNGC 4 cut(s) 21, 47, 81, 94
FspBI CTAG 1 cut(s) 24
GluI GCNGC 4 cut(s) 21, 47, 81, 94
HapII CCGG 1 cut(s) 77
Hin1II CATG 3 cut(s) 93, 156, 218
HinfI GANTC 2 cut(s) 116, 149
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 104, 126, 215
HpyAV CCTTC 2 cut(s) 217, 265
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 20, 46, 96
Hsp92II CATG 3 cut(s) 93, 156, 218
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 205, 274
LpnPI CCDG 5 cut(s) 22, 90, 252, 275, 302
Lsp1109I GCAGC 4 cut(s) 32, 58, 80, 92
LweI GCATC 2 cut(s) 97, 217
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 117, 168
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 158, 170
MluCI AATT 3 cut(s) 164, 194, 245
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 4 cut(s) 75, 195, 222, 288
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 3 cut(s) 93, 156, 218
NmuCI GTSAC 1 cut(s) 117
NspV TTCGAA 1 cut(s) 55
PagI TCATGA 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 22, 48, 82, 95
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PstI CTGCAG 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 21, 47, 81, 94
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 290
SetI ASST 3 cut(s) 25, 29, 228
SfaNI GCATC 2 cut(s) 97, 217
SfcI CTRYAG 2 cut(s) 94, 132
SfuI TTCGAA 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 3 cut(s) 164, 194, 245
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 3 cut(s) 6, 55, 144
TasI AATT 3 cut(s) 164, 194, 245
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 4 cut(s) 20, 46, 80, 93
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 78, 177
TspRI CASTG 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.