Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

14211388 .. 14213081

Gene Structure 1694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAACATGCCCATTGGACGGTGGTGAGGGCTGGAGTCGATGGAGAGATGATGGTAGAGAAGAGGTGTAGCGGTGAGGTCATAGATGAAGAAGAAGAAGCTGTGAGAGAAGAGATGGGAAAGCCAATCTCTAGAGAGGAGATCTGGAAGCCGGCGCTCGTGAAGCCGGCGACGAGTTTGTGCAGCCCAGAAGACGGCGGCGAGTTCGTGCAGACGGCGCCATCGATCGTACAGTCGGCGACGAGTTCGTGCAGCGAGCTCGGAGTTCCTTTACGTCACCTCCGTGCAGCTAGGTTGGAGTTCCGGTTCGTGCAGCGTGCTCGGAGTACGCGCCATCCATTGCCGGCGGCGAGTTCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.26

Weight (kDa)

6.09

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	72, 198, 347
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	231, 328
AfiI	CCNNNNNNNGG	2 cut(s)	19, 194
AleI	CACNNNNGTG	1 cut(s)	282
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	101, 259, 290
AluI	AGCT	3 cut(s)	101, 259, 290
Alw21I	GWGCWC	2 cut(s)	261, 322
ApeKI	GCWGC	4 cut(s)	183, 252, 287, 313
AspLEI	GCGC	3 cut(s)	157, 220, 333
AsuHPI	GGTGA	3 cut(s)	37, 86, 269
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	261, 322
BbvI	GCAGC	4 cut(s)	195, 264, 299, 325
BccI	CCATC	5 cut(s)	35, 46, 109, 229, 342
BceAI	ACGGC	2 cut(s)	211, 231
BcgI	CGANNNNNNTGC	4 cut(s)	241, 275, 302, 336
BfaI	CTAG	2 cut(s)	132, 291
BfoI	RGCGCY	2 cut(s)	158, 221
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	6 cut(s)	184, 199, 253, 288, 314, 348
BlsI	GCNGC	6 cut(s)	185, 200, 254, 289, 315, 349
BmiI	GGNNCC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	54
Bsa29I	ATCGAT	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 290, 294, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 194
Bse118I	RCCGGY	3 cut(s)	151, 166, 343
Bse3DI	GCAATG	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	224
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	19, 194
BseMI	GCAATG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	4 cut(s)	195, 264, 299, 325
BsgI	GTGCAG	5 cut(s)	202, 230, 271, 306, 332
Bsh1236I	CGCG	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	2 cut(s)	261, 322
BsiSI	CCGG	4 cut(s)	152, 167, 304, 344
BslI	CCNNNNNNNGG	2 cut(s)	19, 194
Bsp1286I	GDGCHC	2 cut(s)	261, 322
Bsp143I	GATC	2 cut(s)	141, 225
BspACI	CCGC	3 cut(s)	72, 198, 347
BspDI	ATCGAT	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	338
BsrFI	RCCGGY	3 cut(s)	151, 166, 343
BssAI	RCCGGY	3 cut(s)	151, 166, 343
BssMI	GATC	2 cut(s)	141, 225
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	22, 234
Bst6I	CTCTTC	2 cut(s)	56, 105
BstACI	GRCGYC	1 cut(s)	218
BstC8I	GCNNGC	5 cut(s)	153, 168, 257, 318, 345
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	331
BstH2I	RGCGCY	2 cut(s)	158, 221
BstHHI	GCGC	3 cut(s)	157, 220, 333
BstKTI	GATC	2 cut(s)	144, 228
BstMBI	GATC	2 cut(s)	141, 225
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 217
BstNSI	RCATGY	1 cut(s)	11
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	4 cut(s)	195, 264, 299, 325
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	5 cut(s)	153, 168, 257, 318, 345
CfoI	GCGC	3 cut(s)	157, 220, 333
Cfr10I	RCCGGY	3 cut(s)	151, 166, 343
ClaI	ATCGAT	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	230, 327
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	8 cut(s)	32, 101, 124, 151, 166, 186, 259, 290
CviKI_1	RGCY	8 cut(s)	32, 101, 124, 151, 166, 186, 259, 290
CviQI	GTAC	2 cut(s)	230, 327
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	2 cut(s)	143, 227
DpnII	GATC	2 cut(s)	141, 225
Eam1104I	CTCTTC	2 cut(s)	56, 105
EarI	CTCTTC	2 cut(s)	56, 105
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	261
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
FaeI	CATG	1 cut(s)	11
FaiI	YATR	2 cut(s)	9, 83
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	6 cut(s)	184, 199, 253, 288, 314, 348
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	6 cut(s)	184, 199, 253, 288, 314, 348
FspBI	CTAG	2 cut(s)	132, 291
GlaI	GCGC	3 cut(s)	156, 219, 332
GluI	GCNGC	6 cut(s)	184, 199, 253, 288, 314, 348
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	2 cut(s)	158, 221
HapII	CCGG	4 cut(s)	152, 167, 304, 344
HhaI	GCGC	3 cut(s)	157, 220, 333
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	11
Hin6I	GCGC	3 cut(s)	155, 218, 331
HinP1I	GCGC	3 cut(s)	155, 218, 331
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	4 cut(s)	152, 167, 304, 344
HphI	GGTGA	3 cut(s)	37, 86, 269
Hpy188I	TCNGA	2 cut(s)	263, 324
Hpy188III	TCNNGA	3 cut(s)	132, 145, 160
Hpy99I	CGWCG	2 cut(s)	175, 244
HpyCH4III	ACNGT	2 cut(s)	22, 234
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	183, 211, 252, 287, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 217
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	11
HspAI	GCGC	3 cut(s)	155, 218, 331
KasI	GGCGCC	1 cut(s)	217
KroI	GCCGGC	3 cut(s)	151, 166, 343
KroNI	GCCGGC	3 cut(s)	153, 168, 345
Kzo9I	GATC	2 cut(s)	141, 225
LpnPI	CCDG	7 cut(s)	18, 130, 165, 180, 201, 317, 357
Lsp1109I	GCAGC	4 cut(s)	195, 264, 299, 325
MaeI	CTAG	2 cut(s)	132, 291
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	143, 227
MboI	GATC	2 cut(s)	141, 225
MboII	GAAGA	6 cut(s)	73, 101, 104, 107, 122, 203
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	261, 322
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	21, 57, 70, 130, 290
MroNI	GCCGGC	3 cut(s)	151, 166, 343
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	4 cut(s)	152, 167, 304, 344
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	163, 217
NaeI	GCCGGC	3 cut(s)	153, 168, 345
NarI	GGCGCC	1 cut(s)	218
NdeII	GATC	2 cut(s)	141, 225
NgoMIV	GCCGGC	3 cut(s)	151, 166, 343
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 280
PdiI	GCCGGC	3 cut(s)	153, 168, 345
PkrI	GCNGC	6 cut(s)	185, 200, 254, 289, 315, 349
Ple19I	CGATCG	1 cut(s)	228
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	141
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	2 cut(s)	231, 328
RsaNI	GTAC	2 cut(s)	230, 327
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	6 cut(s)	184, 199, 253, 288, 314, 348
Sau3AI	GATC	2 cut(s)	141, 225
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	261, 322
SetI	ASST	8 cut(s)	68, 81, 103, 261, 277, 282, 292, 296
SfoI	GGCGCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	282
SsiI	CCGC	3 cut(s)	72, 198, 347
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	132, 291
SstI	GAGCTC	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	22, 234
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	39, 224
TauI	GCSGC	2 cut(s)	201, 350
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	4 cut(s)	183, 252, 287, 313
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	17, 102
TspGWI	ACGGA	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	131
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	2 cut(s)	132, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.