Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

32773125 .. 32778127

Gene Structure 5003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATCGACGTTCTCCGTGCGGCTAGGTTGGAGTTCCGGTTCGTGCGGCAAGCTTGGAAGTCACTCTATCCATCACCGGCGGCGAGTTCGTGCCACTATTTTACCCTCACCCCTTTGTTACATAGAGAAAAAGAGAGAGAAGCCATAGGAGACTTCGTCGAGTCCCATCACCGCAGCCGGATTCTCATCACCGGTCGCGGTGGCTGGATTTACGGCCGCCCGGTCGCCGATTTTCGATCACCGACCGCCACCCACCGGACTTCTCCGAAAACTTCACCGGAGGCGGTGAAACAATATACATTTGGGGTACCGATTTATTTCTTCGACATTTACTCTAGTGGACATATTAGAGAAGGCTTTTCCGACACTACCAAGATCACCGATGAGAAACGTAAAGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.49

Weight (kDa)

9.67

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccII	CGCG	1 cut(s)	198
AciI	CCGC	8 cut(s)	20, 46, 80, 172, 198, 217, 246, 284
AcoI	YGGCCR	1 cut(s)	214
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgeI	ACCGGT	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	174
AsiGI	ACCGGT	1 cut(s)	191
Asp718I	GGTACC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	8 cut(s)	66, 100, 161, 181, 231, 267, 298, 370
BanI	GGYRCC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	79, 174
BceAI	ACGGC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	3 cut(s)	24, 336, 403
BisI	GCNGC	5 cut(s)	21, 47, 81, 175, 217
BlsI	GCNGC	5 cut(s)	22, 48, 82, 176, 218
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	185
BsaWI	WCCGGW	4 cut(s)	36, 191, 255, 277
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	2 cut(s)	76, 191
Bse8I	GATNNNNATC	1 cut(s)	185
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	4 cut(s)	196, 217, 225, 246
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	307
BshTI	ACCGGT	1 cut(s)	191
BsiEI	CGRYCG	4 cut(s)	196, 217, 225, 246
BsiSI	CCGG	7 cut(s)	37, 77, 178, 192, 221, 256, 278
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	3, 236, 375
BspACI	CCGC	8 cut(s)	20, 46, 80, 172, 198, 217, 246, 284
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	76, 191
BssAI	RCCGGY	2 cut(s)	76, 191
BssMI	GATC	3 cut(s)	3, 236, 375
BstC8I	GCNNGC	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	6, 239, 378
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	3, 236, 375
BstMCI	CGRYCG	4 cut(s)	196, 217, 225, 246
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	2 cut(s)	76, 191
Csp6I	GTAC	1 cut(s)	308
CspAI	ACCGGT	1 cut(s)	191
CviJI	RGCY	7 cut(s)	23, 53, 143, 177, 204, 216, 357
CviKI_1	RGCY	7 cut(s)	23, 53, 143, 177, 204, 216, 357
CviQI	GTAC	1 cut(s)	308
DpnI	GATC	3 cut(s)	5, 238, 377
DpnII	GATC	3 cut(s)	3, 236, 375
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	214
Eco52I	CGGCCG	1 cut(s)	214
FaiI	YATR	4 cut(s)	123, 146, 297, 345
FaqI	GGGAC	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	21, 47, 81, 175, 217
Fsp4HI	GCNGC	5 cut(s)	21, 47, 81, 175, 217
FspBI	CTAG	3 cut(s)	24, 336, 403
GluI	GCNGC	5 cut(s)	21, 47, 81, 175, 217
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	7 cut(s)	37, 77, 178, 192, 221, 256, 278
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	2 cut(s)	161, 181
HpaII	CCGG	7 cut(s)	37, 77, 178, 192, 221, 256, 278
HphI	GGTGA	8 cut(s)	66, 100, 161, 181, 231, 267, 298, 370
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	267, 364
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	2 cut(s)	11, 161
HpyAV	CCTTC	1 cut(s)	347
HpyCH4IV	ACGT	2 cut(s)	9, 391
HpySE526I	ACGT	2 cut(s)	9, 391
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	3 cut(s)	3, 236, 375
LpnPI	CCDG	8 cut(s)	50, 90, 190, 191, 205, 234, 269, 291
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	3 cut(s)	24, 336, 403
MaeII	ACGT	2 cut(s)	9, 391
MaeIII	GTNAC	2 cut(s)	60, 117
MalI	GATC	3 cut(s)	5, 238, 377
MboI	GATC	3 cut(s)	3, 236, 375
MboII	GAAGA	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	9, 387
MnlI	CCTC	2 cut(s)	116, 274
MspI	CCGG	7 cut(s)	37, 77, 178, 192, 221, 256, 278
MspR9I	CCNGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	198
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	3, 236, 375
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	22, 48, 82, 176, 218
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SatI	GCNGC	5 cut(s)	21, 47, 81, 175, 217
Sau3AI	GATC	3 cut(s)	3, 236, 375
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	4 cut(s)	12, 29, 55, 394
SgrAI	CRCCGGYG	1 cut(s)	76
SsiI	CCGC	8 cut(s)	20, 46, 80, 172, 198, 217, 246, 284
SspMI	CTAG	3 cut(s)	24, 336, 403
StyD4I	CCNGG	1 cut(s)	219
TaiI	ACGT	2 cut(s)	12, 394
TaqI	TCGA	4 cut(s)	6, 159, 235, 324
TauI	GCSGC	4 cut(s)	23, 49, 83, 219
TfiI	GAWTC	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	5
Tth111I	GACNNNGTC	1 cut(s)	155
XspI	CTAG	3 cut(s)	24, 336, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.