Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001408.1

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Reverse (-)

78581 .. 80847

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001408.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgagaagcgaaagtgaacaaggtcacctttcccacaagccagagtcagtcaatttgtggttgttgtctaattactatgccttggaatcagtggaccagtcgacgagggcaacagtgacagaccgctattttacaagtgtcagccgcagccagagacaaaaagatttaccctttttcttcttcttctgcttctgggcacgtgggaagctccgcagattacgggtatggagagggactcaacattccattcgtcacgattggaataatatctctttggattcggattatggtgcttcgcaagccaattctccggcaccggctgactgcccagggaatcgcgaaccgagattggaaagtgcggcgacaacaccagaggtctgctcggcgagtcgcgaactgagatcttggtgcccggcatcggcatgcgtctgctctctctggcgctccgccctccctcctctagacccaatcggcgctcttcctctccccttcggattccctcacgccggcgacgagccccctgccgccgtctctcagaccaccgtctactgcttgcagtcgctgatcaccggcaaaggttcagatcactactcggagcttgtggaatcgggtcagtttgcttttcaggcggtggaggccacagactacatggcgtgtttctgggcgcccgatcacaagccctcgacgacgttgaccattgagtttgattggaagaccggtgtggcggccaagggaatgaacaccattcctgtgataattcgcctgattcctgtcacaggtcgccggattccggtcacaggtcgccggattccggtcacaggtcgccggattcccatcaccggagtaggcggccggccactggtcaccgaagtcttgcaaggtggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

296

Amino Acids

32.71

Weight (kDa)

8.64

Isoelectric Point (pI)

66.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	313, 408, 664
AccI	GTMKAC	2 cut(s)	101, 546
AccII	CGCG	2 cut(s)	339, 393
AciI	CCGC	9 cut(s)	124, 145, 211, 359, 447, 525, 629, 725, 849
AcoI	YGGCCR	3 cut(s)	726, 850, 854
AcvI	CACGTG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	665
AfiI	CCNNNNNNNGG	9 cut(s)	418, 506, 776, 790, 797, 811, 818, 839, 859
AgeI	ACCGGT	1 cut(s)	716
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	208, 598
AluI	AGCT	2 cut(s)	208, 598
Alw26I	GTCTC	2 cut(s)	148, 535
AlwNI	CAGNNNCTG	1 cut(s)	562
AoxI	GGCC	4 cut(s)	636, 726, 850, 854
ApeKI	GCWGC	1 cut(s)	147
AsiGI	ACCGGT	1 cut(s)	716
AspLEI	GCGC	3 cut(s)	444, 476, 667
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	17, 559, 829, 856
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	199, 413
BanI	GGYRCC	3 cut(s)	313, 408, 664
BanII	GRGCYC	1 cut(s)	519
BbrPI	CACGTG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	842
BceAI	ACGGC	1 cut(s)	512
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	148, 535
BfaI	CTAG	1 cut(s)	461
BfoI	RGCGCY	3 cut(s)	445, 477, 668
BglII	AGATCT	1 cut(s)	401
BisI	GCNGC	6 cut(s)	145, 148, 360, 525, 726, 850
BlsI	GCNGC	6 cut(s)	146, 149, 361, 526, 727, 851
Bme1390I	CCNGG	2 cut(s)	330, 413
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	315, 410, 666
BmrFI	CCNGG	2 cut(s)	330, 413
BmsI	GCATC	1 cut(s)	425
BoxI	GACNNNNGTC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	4 cut(s)	220, 252, 365, 397
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	665
BsaJI	CCNNGG	4 cut(s)	81, 328, 329, 729
BsaWI	WCCGGW	4 cut(s)	716, 790, 811, 839
Bsc4I	CCNNNNNNNGG	9 cut(s)	418, 506, 776, 790, 797, 811, 818, 839, 859
Bse118I	RCCGGY	5 cut(s)	316, 506, 569, 716, 852
Bse1I	ACTGG	2 cut(s)	97, 864
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	4 cut(s)	81, 328, 329, 729
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	9 cut(s)	418, 506, 776, 790, 797, 811, 818, 839, 859
BseMII	CTCAG	2 cut(s)	389, 548
BseNI	ACTGG	2 cut(s)	97, 864
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	2 cut(s)	199, 413
BseX3I	CGGCCG	1 cut(s)	850
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	339, 393
Bsh1285I	CGRYCG	1 cut(s)	853
BshFI	GGCC	4 cut(s)	638, 728, 852, 856
BshNI	GGYRCC	3 cut(s)	313, 408, 664
BshTI	ACCGGT	1 cut(s)	716
BsiEI	CGRYCG	1 cut(s)	853
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	9 cut(s)	418, 506, 776, 790, 797, 811, 818, 839, 859
BsmAI	GTCTC	2 cut(s)	148, 535
BsmBI	CGTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	4 cut(s)	638, 728, 852, 856
Bsp1286I	GDGCHC	3 cut(s)	199, 413, 519
Bsp143I	GATC	4 cut(s)	401, 564, 583, 670
Bsp68I	TCGCGA	2 cut(s)	339, 393
BspACI	CCGC	9 cut(s)	124, 145, 211, 359, 447, 525, 629, 725, 849
BspANI	GGCC	4 cut(s)	638, 728, 852, 856
BspCNI	CTCAG	2 cut(s)	390, 547
BspFNI	CGCG	2 cut(s)	339, 393
BspLI	GGNNCC	3 cut(s)	315, 410, 666
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	3 cut(s)	313, 408, 664
BsrFI	RCCGGY	5 cut(s)	316, 506, 569, 716, 852
BsrI	ACTGG	2 cut(s)	97, 864
BssAI	RCCGGY	5 cut(s)	316, 506, 569, 716, 852
BssECI	CCNNGG	4 cut(s)	81, 328, 329, 729
BssMI	GATC	4 cut(s)	401, 564, 583, 670
BssNI	GRCGYC	1 cut(s)	665
BssT1I	CCWWGG	2 cut(s)	81, 729
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	115, 544
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	5 cut(s)	300, 424, 508, 554, 854
BstDEI	CTNAG	2 cut(s)	398, 534
BstEII	GGTNACC	2 cut(s)	23, 862
BstENI	CCTNNNNNAGG	1 cut(s)	774
BstFNI	CGCG	2 cut(s)	339, 393
BstH2I	RGCGCY	3 cut(s)	445, 477, 668
BstHHI	GCGC	3 cut(s)	444, 476, 667
BstKTI	GATC	4 cut(s)	404, 567, 586, 673
BstMAI	GTCTC	2 cut(s)	148, 535
BstMBI	GATC	4 cut(s)	401, 564, 583, 670
BstMCI	CGRYCG	1 cut(s)	853
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 626, 635
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	426
BstPAI	GACNNNNGTC	1 cut(s)	542
BstPI	GGTNACC	2 cut(s)	23, 862
BstSCI	CCNGG	2 cut(s)	328, 411
BstSLI	GKGCMC	2 cut(s)	199, 413
BstUI	CGCG	2 cut(s)	339, 393
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BstZI	CGGCCG	1 cut(s)	850
BsuRI	GGCC	4 cut(s)	638, 728, 852, 856
BtsIMutI	CAGTG	3 cut(s)	96, 120, 857
BtuMI	TCGCGA	2 cut(s)	339, 393
Cac8I	GCNNGC	5 cut(s)	300, 424, 508, 554, 854
CaiI	CAGNNNCTG	1 cut(s)	562
CfoI	GCGC	3 cut(s)	444, 476, 667
Cfr10I	RCCGGY	5 cut(s)	316, 506, 569, 716, 852
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	716
CviAII	CATG	2 cut(s)	423, 649
DdeI	CTNAG	2 cut(s)	398, 534
DinI	GGCGCC	1 cut(s)	666
DpnI	GATC	4 cut(s)	403, 566, 585, 672
DpnII	GATC	4 cut(s)	401, 564, 583, 670
EaeI	YGGCCR	3 cut(s)	726, 850, 854
EagI	CGGCCG	1 cut(s)	850
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	436
EclXI	CGGCCG	1 cut(s)	850
Eco130I	CCWWGG	2 cut(s)	81, 729
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	850
Eco72I	CACGTG	1 cut(s)	200
Eco91I	GGTNACC	2 cut(s)	23, 862
EcoNI	CCTNNNNNAGG	1 cut(s)	774
EcoO65I	GGTNACC	2 cut(s)	23, 862
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	81, 729
EcoT38I	GRGCYC	1 cut(s)	519
EgeI	GGCGCC	1 cut(s)	666
EheI	GGCGCC	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	81, 729
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	2 cut(s)	426, 652
FaiI	YATR	5 cut(s)	78, 226, 288, 424, 650
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	422, 648
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	2 cut(s)	101, 546
Fnu4HI	GCNGC	6 cut(s)	145, 148, 360, 525, 726, 850
FriOI	GRGCYC	1 cut(s)	519
FseI	GGCCGGCC	1 cut(s)	856
Fsp4HI	GCNGC	6 cut(s)	145, 148, 360, 525, 726, 850
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	3 cut(s)	443, 475, 666
GluI	GCNGC	6 cut(s)	145, 148, 360, 525, 726, 850
HaeII	RGCGCY	3 cut(s)	445, 477, 668
HaeIII	GGCC	4 cut(s)	638, 728, 852, 856
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	3 cut(s)	444, 476, 667
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	2 cut(s)	426, 652
Hin6I	GCGC	3 cut(s)	442, 474, 665
HinP1I	GCGC	3 cut(s)	442, 474, 665
HincII	GTYRAC	2 cut(s)	102, 693
HindII	GTYRAC	2 cut(s)	102, 693
HphI	GGTGA	4 cut(s)	17, 559, 829, 856
Hpy166II	GTNNAC	5 cut(s)	17, 94, 102, 547, 693
Hpy188I	TCNGA	5 cut(s)	283, 494, 537, 583, 595
Hpy188III	TCNNGA	4 cut(s)	254, 338, 392, 461
Hpy8I	GTNNAC	5 cut(s)	17, 94, 102, 547, 693
Hpy99I	CGWCG	4 cut(s)	106, 515, 688, 691
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	2 cut(s)	115, 544
HpyCH4IV	ACGT	2 cut(s)	199, 689
HpyCH4V	TGCA	2 cut(s)	556, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 626, 635
HpyF3I	CTNAG	2 cut(s)	398, 534
HpySE526I	ACGT	2 cut(s)	199, 689
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	2 cut(s)	426, 652
HspAI	GCGC	3 cut(s)	442, 474, 665
KasI	GGCGCC	1 cut(s)	664
KroI	GCCGGC	2 cut(s)	506, 852
KroNI	GCCGGC	2 cut(s)	508, 854
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	401, 564, 583, 670
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	213, 449, 595
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	199, 689
MaeIII	GTNAC	7 cut(s)	23, 115, 251, 772, 793, 814, 862
MalI	GATC	4 cut(s)	403, 566, 585, 672
MboI	GATC	4 cut(s)	401, 564, 583, 670
MboII	GAAGA	5 cut(s)	169, 172, 175, 470, 724
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	3 cut(s)	199, 413, 519
MluCI	AATT	4 cut(s)	52, 70, 304, 756
Mly113I	GGCGCC	1 cut(s)	665
MlyI	GAGTC	3 cut(s)	53, 229, 397
MreI	CGCCGGCG	1 cut(s)	506
MroNI	GCCGGC	2 cut(s)	506, 852
MslI	CAYNNNNRTG	2 cut(s)	421, 749
MspR9I	CCNGG	2 cut(s)	330, 413
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	2 cut(s)	339, 393
MwoI	GCNNNNNNNGC	3 cut(s)	299, 626, 635
NaeI	GCCGGC	2 cut(s)	508, 854
NarI	GGCGCC	1 cut(s)	665
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	4 cut(s)	401, 564, 583, 670
NgoMIV	GCCGGC	2 cut(s)	506, 852
NlaIII	CATG	2 cut(s)	426, 652
NlaIV	GGNNCC	3 cut(s)	315, 410, 666
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	7 cut(s)	23, 115, 251, 772, 793, 814, 862
NruI	TCGCGA	2 cut(s)	339, 393
NspI	RCATGY	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	426
PasI	CCCWGGG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PdiI	GCCGGC	2 cut(s)	508, 854
PfeI	GAWTC	9 cut(s)	86, 278, 334, 495, 605, 766, 787, 808, 829
PinAI	ACCGGT	1 cut(s)	716
PkrI	GCNGC	6 cut(s)	146, 149, 361, 526, 727, 851
PleI	GAGTC	3 cut(s)	52, 229, 396
PluTI	GGCGCC	1 cut(s)	668
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	3 cut(s)	52, 229, 396
Ppu21I	YACGTR	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	200
PspEI	GGTNACC	2 cut(s)	23, 862
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	315, 410, 666
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	401
RigI	GGCCGGCC	1 cut(s)	856
RruI	TCGCGA	2 cut(s)	339, 393
RseI	CAYNNNNRTG	2 cut(s)	421, 749
SalI	GTCGAC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	483
SatI	GCNGC	6 cut(s)	145, 148, 360, 525, 726, 850
Sau3AI	GATC	4 cut(s)	401, 564, 583, 670
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	3 cut(s)	53, 229, 397
ScrFI	CCNGG	2 cut(s)	330, 413
SduI	GDGCHC	3 cut(s)	199, 413, 519
SfaNI	GCATC	1 cut(s)	425
SfoI	GGCGCC	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	2 cut(s)	421, 749
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	4 cut(s)	52, 70, 304, 756
SsiI	CCGC	9 cut(s)	124, 145, 211, 359, 447, 525, 629, 725, 849
SspDI	GGCGCC	1 cut(s)	664
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	2 cut(s)	328, 411
StyI	CCWWGG	2 cut(s)	81, 729
TaaI	ACNGT	2 cut(s)	115, 544
TaiI	ACGT	2 cut(s)	202, 692
TaqI	TCGA	2 cut(s)	101, 683
TasI	AATT	4 cut(s)	52, 70, 304, 756
TauI	GCSGC	5 cut(s)	147, 362, 527, 728, 852
TfiI	GAWTC	9 cut(s)	86, 278, 334, 495, 605, 766, 787, 808, 829
TscAI	CASTG	3 cut(s)	96, 120, 864
TseFI	GTSAC	7 cut(s)	23, 115, 251, 772, 793, 814, 862
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	7 cut(s)	23, 115, 251, 772, 793, 814, 862
TspDTI	ATGAA	1 cut(s)	752
TspRI	CASTG	3 cut(s)	96, 120, 864
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	774
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmiI	GTMKAC	2 cut(s)	101, 546
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.