Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008903

Physical Location & Seq

Genomic Coordinates Forward (+)

25386704 .. 25387156

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008081

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCTACTCCGGCGGCTTCGGGCCACCACCTCCGGCTTCGCTTTGTCTCTATCTCTCTATCGCAAGCCAATTCTCTGGCACCGGCTTACTGCTCGGGGAGTCGCGAATCGAGATTGGAAAGTGCGGCGACAACACCAAAGGTCTGCGCGGCGAGTCGTGAACTGAGATCTTGGTGCCCGGCGCCGGCATGCGTCTGCTCTATATGGCGCTCCGCCCTCCCTCCTTTAGACCCAATCGGCGCTCCTCCTCTCCCCCTCGGATTCCCTCACGCAGGCGACGAGCCCTCTGCCGCCGTCTCTCAGATCACCGTCTACCGCTTGCAGTCGCTGATCACCGGCGAAGGTTCAGATCACTACTTGGAGCTTGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

125

Amino Acids

13.1

Weight (kDa)

6.4

Isoelectric Point (pI)

64.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117571
rosa_laevigata	RLG00000001220 RLG00000001333 RLG00000001877 RLG00000008081 RLG00000011424 RLG00000013237 RLG00000015905 RLG00000022956
rosa_multiflora	Rmu_sc0000735.1_g000011 Rmu_sc0001408.1_g000014 Rmu_sc0005263.1_g000012 Rmu_sc0032693.1_g000001 Rmu_ssc0000330.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295960 Rroxscaffold_6G00410330
rosa_samantha	Rh1AG061500 Rh2BG435400 Rh5DG024800 Rh6CG096100 Rh6CG237800 Rh6DG498300 Rh7BG199200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	79, 174, 181
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	2 cut(s)	105, 149
AciI	CCGC	6 cut(s)	14, 125, 149, 213, 291, 316
AcyI	GRCGYC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	184, 272
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	52, 301
AlwNI	CAGNNNCTG	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	22
AspLEI	GCGC	4 cut(s)	149, 184, 210, 242
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	298, 325
AvaI	CYCGRG	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	3 cut(s)	79, 174, 181
BanII	GRGCYC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	52, 301
BfoI	RGCGCY	3 cut(s)	185, 211, 243
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	4 cut(s)	15, 126, 150, 291
BlsI	GCNGC	4 cut(s)	16, 127, 151, 292
Bme1390I	CCNGG	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	81, 176, 183
BmrFI	CCNGG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 272
Bse118I	RCCGGY	3 cut(s)	82, 184, 335
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	184, 272
BseMII	CTCAG	2 cut(s)	155, 314
BseRI	GAGGAG	2 cut(s)	234, 237
BseSI	GKGCMC	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	105, 149
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	3 cut(s)	79, 174, 181
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	6 cut(s)	11, 34, 83, 179, 185, 336
BslI	CCNNNNNNNGG	2 cut(s)	184, 272
BsmAI	GTCTC	2 cut(s)	52, 301
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	179, 285
Bsp143I	GATC	4 cut(s)	167, 303, 330, 349
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	6 cut(s)	14, 125, 149, 213, 291, 316
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	156, 313
BspFNI	CGCG	2 cut(s)	105, 149
BspLI	GGNNCC	3 cut(s)	81, 176, 183
BspT107I	GGYRCC	3 cut(s)	79, 174, 181
BsrFI	RCCGGY	3 cut(s)	82, 184, 335
BssAI	RCCGGY	3 cut(s)	82, 184, 335
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	167, 303, 330, 349
BssNI	GRCGYC	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	5 cut(s)	66, 186, 190, 274, 320
BstDEI	CTNAG	2 cut(s)	164, 300
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstFNI	CGCG	2 cut(s)	105, 149
BstH2I	RGCGCY	3 cut(s)	185, 211, 243
BstHHI	GCGC	4 cut(s)	149, 184, 210, 242
BstKTI	GATC	4 cut(s)	170, 306, 333, 352
BstMAI	GTCTC	2 cut(s)	52, 301
BstMBI	GATC	4 cut(s)	167, 303, 330, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	2 cut(s)	105, 149
BstX2I	RGATCY	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	5 cut(s)	66, 186, 190, 274, 320
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	4 cut(s)	149, 184, 210, 242
Cfr10I	RCCGGY	3 cut(s)	82, 184, 335
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	181
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	8 cut(s)	5, 17, 24, 37, 68, 86, 283, 364
CviKI_1	RGCY	8 cut(s)	5, 17, 24, 37, 68, 86, 283, 364
DdeI	CTNAG	2 cut(s)	164, 300
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	4 cut(s)	169, 305, 332, 351
DpnII	GATC	4 cut(s)	167, 303, 330, 349
EciI	GGCGGA	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	1 cut(s)	192
FaiI	YATR	3 cut(s)	190, 203, 205
FatI	CATG	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	15, 126, 150, 291
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	15, 126, 150, 291
GlaI	GCGC	4 cut(s)	148, 183, 209, 241
GluI	GCNGC	4 cut(s)	15, 126, 150, 291
HaeII	RGCGCY	3 cut(s)	185, 211, 243
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	6 cut(s)	11, 34, 83, 179, 185, 336
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	4 cut(s)	149, 184, 210, 242
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	192
Hin6I	GCGC	4 cut(s)	147, 182, 208, 240
HinP1I	GCGC	4 cut(s)	147, 182, 208, 240
HinfI	GANTC	4 cut(s)	100, 107, 154, 261
HpaII	CCGG	6 cut(s)	11, 34, 83, 179, 185, 336
HphI	GGTGA	2 cut(s)	298, 325
Hpy166II	GTNNAC	2 cut(s)	161, 313
Hpy188I	TCNGA	3 cut(s)	260, 303, 349
Hpy188III	TCNNGA	3 cut(s)	104, 111, 158
Hpy8I	GTNNAC	2 cut(s)	161, 313
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	164, 300
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	192
HspAI	GCGC	4 cut(s)	147, 182, 208, 240
KasI	GGCGCC	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	167, 303, 330, 349
LmnI	GCTCC	3 cut(s)	215, 247, 361
LpnPI	CCDG	8 cut(s)	24, 47, 62, 96, 192, 198, 258, 349
MalI	GATC	4 cut(s)	169, 305, 332, 351
MboI	GATC	4 cut(s)	167, 303, 330, 349
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	179, 285
MluCI	AATT	1 cut(s)	70
Mly113I	GGCGCC	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	109, 163
MnlI	CCTC	8 cut(s)	41, 227, 231, 255, 258, 266, 276, 295
MroNI	GCCGGC	1 cut(s)	184
MspI	CCGG	6 cut(s)	11, 34, 83, 179, 185, 336
MspR9I	CCNGG	1 cut(s)	179
MvnI	CGCG	2 cut(s)	105, 149
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	1 cut(s)	186
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	4 cut(s)	167, 303, 330, 349
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	192
NlaIV	GGNNCC	3 cut(s)	81, 176, 183
NruI	TCGCGA	1 cut(s)	105
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	107, 261
PkrI	GCNGC	4 cut(s)	16, 127, 151, 292
PleI	GAGTC	2 cut(s)	108, 162
PluTI	GGCGCC	1 cut(s)	185
PpsI	GAGTC	2 cut(s)	108, 162
PspN4I	GGNNCC	3 cut(s)	81, 176, 183
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	167
RruI	TCGCGA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	15, 126, 150, 291
Sau3AI	GATC	4 cut(s)	167, 303, 330, 349
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	2 cut(s)	109, 163
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	179, 285
SetI	ASST	4 cut(s)	33, 144, 346, 366
SfoI	GGCGCC	1 cut(s)	183
SgrAI	CRCCGGYG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	6 cut(s)	14, 125, 149, 213, 291, 316
SspDI	GGCGCC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	70
TauI	GCSGC	4 cut(s)	17, 128, 152, 293
TfiI	GAWTC	2 cut(s)	107, 261
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.