RchiOBHm_Chr2g0174141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007547
Physical Location & Seq
Reverse (-)
86826420 .. 86828903
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54131

Sequence Viewer

Length: 714 bp
ATGGTGAAGACCGAAGTCTCTGAAATCCCGAAGATTACTTACCAGGCGGATATGATGGATGAATTGAAGGCGGCACATGTTCTTATGGGTATTGGTGCTCCGGAGGCGGCGGCGGACGGTGTTCCTGCAGCGGCTGCGGCGGAGGAAAGCAGATGTGGTGGTGGTGATGAAGAGTCACGCCCAAGTTCTAAGGCTGATGAAATTAATATCCCCCCTTGGACACTAATAATCCCAAAGTTGGAAGATCACACTAATCTTCTACAGCTCCCTGACGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACCTTGATTCAGTGAGTGCAGCTACAGCGGTCATGTTAGTGCCAGTGCTCGGTCGTACTATGAGCCTTTTGAAAAAAAAGTTACAAAAGGAGGTTGCTGGATATGATGAGGACGACGACGATGACAACGAGGAAAAGGATGTTGGCAATCAACATGAAATGAATCAGGAGGAGGGTGAGCAAAGAAAGGAGAATAAACATAAGGAGGATGTTATTGTTTTAAGTGATGACGATGAAGATGACGAGAAGGAGAAGGCTGGGAAGGTCTATTCAAAGCCGCTGTTGATGAAAATGAAGGTTGATGACCTTAGACATTTAGCTGTTAAGCTGCGATTGAAAAATAGCTCCTGGGATTCAAAGGAGAAGCTGGTTGATCGTATTGCAAAGGCACTAGGTGTTTGTAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.14

Weight (kDa)

4.67

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 100
AdeI CACNNNGTG 1 cut(s) 698
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 238, 353
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 5 cut(s) 67, 376, 576, 640, 660
AjnI CCWGG 2 cut(s) 42, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 7 cut(s) 265, 302, 326, 623, 631, 648, 670
AluI AGCT 7 cut(s) 265, 302, 326, 623, 631, 648, 670
Alw21I GWGCWC 2 cut(s) 100, 354
Alw26I GTCTC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 128, 134, 323, 631
AseI ATTAAT 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 16, 176, 491
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 100, 354
BbvI GCAGC 4 cut(s) 121, 140, 335, 618
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 44, 652
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 3 cut(s) 126, 260, 327
Bme1390I CCNGG 2 cut(s) 44, 652
BmrFI CCNGG 2 cut(s) 44, 652
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 215, 651
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 353
Bse1I ACTGG 1 cut(s) 347
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 2 cut(s) 44, 652
BseDI CCNNGG 2 cut(s) 215, 651
BseGI GGATG 3 cut(s) 64, 448, 517
BseLI CCNNNNNNNGG 2 cut(s) 238, 353
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 4 cut(s) 121, 140, 335, 618
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 100, 354
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 238, 353
BsmAI GTCTC 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 100, 354
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 3 cut(s) 244, 274, 676
BspEI TCCGGA 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 215, 651
BssMI GATC 3 cut(s) 244, 274, 676
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 44, 652
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 189, 611
BstF5I GGATG 3 cut(s) 64, 448, 517
BstKTI GATC 3 cut(s) 247, 277, 679
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 3 cut(s) 244, 274, 676
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 104, 134, 137, 329
BstNI CCWGG 2 cut(s) 44, 652
BstNSI RCATGY 1 cut(s) 80
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 42, 650
BstSFI CTRYAG 3 cut(s) 126, 260, 327
BstV1I GCAGC 4 cut(s) 121, 140, 335, 618
BstV2I GAAGAC 1 cut(s) 14
BtsCI GGATG 3 cut(s) 64, 448, 517
BtsIMutI CAGTG 2 cut(s) 321, 354
CaiI CAGNNNCTG 1 cut(s) 134
Csp6I GTAC 1 cut(s) 360
CviAII CATG 3 cut(s) 77, 337, 458
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 189, 611
DpnI GATC 3 cut(s) 246, 276, 678
DpnII GATC 3 cut(s) 244, 274, 676
DraIII CACNNNGTG 1 cut(s) 698
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EciI GGCGGA 3 cut(s) 62, 128, 155
Eco130I CCWWGG 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 42, 650
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 80, 340, 461
FaiI YATR 8 cut(s) 53, 78, 86, 338, 365, 408, 459, 504
FatI CATG 3 cut(s) 76, 336, 457
FokI GGATG 3 cut(s) 71, 455, 524
FspBI CTAG 1 cut(s) 695
GsaI CCCAGC 1 cut(s) 564
HapII CCGG 1 cut(s) 101
Hin1II CATG 3 cut(s) 80, 340, 461
HinfI GANTC 4 cut(s) 173, 311, 466, 656
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 16, 176, 491
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 28, 101, 470
Hpy99I CGWCG 2 cut(s) 422, 425
HpyAV CCTTC 5 cut(s) 61, 544, 550, 559, 592
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 128, 323, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 134, 137, 329
HpyF3I CTNAG 2 cut(s) 189, 611
Hsp92II CATG 3 cut(s) 80, 340, 461
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 244, 274, 676
LmnI GCTCC 3 cut(s) 103, 270, 653
Lsp1109I GCAGC 4 cut(s) 121, 140, 335, 618
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 2 cut(s) 174, 384
MalI GATC 3 cut(s) 246, 276, 678
MboI GATC 3 cut(s) 244, 274, 676
MboII GAAGA 6 cut(s) 19, 43, 182, 248, 254, 551
MhlI GDGCHC 2 cut(s) 100, 354
MluCI AATT 2 cut(s) 62, 201
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 8 cut(s) 97, 136, 388, 406, 427, 466, 469, 502
MroI TCCGGA 1 cut(s) 100
MseI TTAA 3 cut(s) 204, 524, 627
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 4 cut(s) 131, 302, 332, 583
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 44, 652
MvaI CCWGG 2 cut(s) 44, 652
MwoI GCNNNNNNNGC 4 cut(s) 104, 134, 137, 329
NdeII GATC 3 cut(s) 244, 274, 676
NlaIII CATG 3 cut(s) 80, 340, 461
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 3 cut(s) 311, 466, 656
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 42, 650
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 42, 650
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 204, 524, 627
Sau3AI GATC 3 cut(s) 244, 274, 676
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 44, 652
SduI GDGCHC 2 cut(s) 100, 354
SfcI CTRYAG 3 cut(s) 126, 260, 327
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 62, 201
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 2 cut(s) 42, 650
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 292
TaqII GACCGA 2 cut(s) 26, 344
TasI AATT 2 cut(s) 62, 201
TauI GCSGC 6 cut(s) 74, 110, 113, 134, 140, 583
TfiI GAWTC 3 cut(s) 311, 466, 656
Tru1I TTAA 3 cut(s) 204, 524, 627
Tru9I TTAA 3 cut(s) 204, 524, 627
TscAI CASTG 2 cut(s) 321, 354
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 4 cut(s) 128, 134, 323, 631
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 8 cut(s) 75, 183, 213, 474, 479, 552, 605, 611
TspRI CASTG 2 cut(s) 321, 354
VspI ATTAAT 1 cut(s) 204
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.