Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

81938872 .. 81945085

Gene Structure 6214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGTGAAGTCGTACCTCAGATACGAGCAGGGGGCCGCCTTCGGCGTCATAGTGTCCGGCGGTTCAAACATCACGTACGACGGCTCCGGCAAGCACCTTGTTGCTCCGGCCCTGGAAACGCTGCGCGTGTGGCACGCGCATCAAGGCATTTGTTCCAAAACCCTAACTCCTTCTCTGGAACATCCTACTTTGGTCACCTGCATTGCGGCCTCACCTTGTTCTTCTCTGATAGCCTGTGGGTATGGAGATGGTAGTATAAGAATTTGGGATTCTGACACTGAAACCTGCGACAACATTTTCAATGGTCATAATGGGGCTGTTACTGCCTTACGGTACAATGAGCGTGGGGATATGGTTGCATCTGGAGGCCAAGATAAGGACATTGTATTATGGGATGTGGAGATGGGCGAGGGCAGATATCGTCTCCACGGGCATGCCGATCAGGTCACTGATCTTGTTTTCTTGGATTCTAGTAACAAACTCGTTAGTTCCTCAAAAGATAAATTGTTGAAGGTGTGGGATCTTGGAAACTTGAATCAAACCCCGTATTGCATGCAGACGATTAGTGGCCATCATAGTGAAATTTGGTCCATAGATAGGGACCCAGATGAAAAGTATTTAGTCTCGGGGTCTGCAGACCGAGAACTAAGATTTTACACAATTAAGCATAACTTGGAAGGTGGCCAATCCATTTCTAATGGGAATGGAACTGAGATTGTGAGCTGTGAAGATAACAAATGGGAAGTTTTGAAGCTGTTTGGTGAATATAATAAGCGGCAAAGCAAGTATAGAGTTGCAAGTGTAAGGTTCAACAAGTCTGGAAACTTGCTGGCTTGTCAAGAGGCAGGAAAGACAGTAGAAATATTCAATGTGTTGAATGAGGCTGAATCAAAGTGTAAAGCAAAGCGCAGGCTTCGCCGGAAGAAGGAGAAGAAAAATGCAAAAGGGGAGCCTGAGGTGATGGAAGATGGAGACACAAATCATGAAGCTGGAGAAGAAGGAAATAATCATGTGGTTACTGTCTCTGATGTCTTTGAACATCTCCAAACTATTCGAGCTGCCAAAAAGATATGTTCCATCTCTTTCTCTCCAAATCCCCCAAAGAATTTGCGAGCTACATTAGCTCTGTCACTGAACAATAATTTGTTGGAGTTTTATTCTGTTGAAGGTGCAGTGACAAAAAAAACACATACTATAGAGCTCCAGGGTCACCGATCTTCTGTTAGAAGTTTGACACTGAGCTCAGACAACAGCTTTGTGATGTCAACTAGTGATACTGAAGTCAAGCTTTGGAATCCTATGGTTTTATCCTTCCCAATAACAAATATGCACTTGTTGGAACTTAAGGGTGGAAATATGGAGATTATTGATACCGGGAATGCCACTGTCACTGAAGTAGTGGAAGCTCATGGTGGTTCTGTTCAATCTATTGTAAGACTTCCCAATGAAAATGGTTTTGTCACAGGAAGTTTGGATGGTTATGTTAAGTTCTGGGAATATGAAGTCAAACAAAAGTCTCCCCAAGATTCTAAGCACCTAATGGTGACAAATGTAAGAACCATGAAAATGGATACTGACGTTCGTGTGGTTGCTGTTAGCCCCGATGCCAGATATATTTTGGTTGGCTTGGACTCCACAGTAAAGGTATACTATATGGACAAGCTCAATCCTTTCCTTACCTTATATGGTCATAAGCTGCCTGTGCTATGTATGGATGTGTCATCTGATGGAGATCTGATAGTGACCGGATCTCAAGACAAAAATGTAAAGATTTGGGGTTTAGATTTTGGCGACTGCCACAAATCAATGTTCTTTCATAGGAGCAATAAGCAAGTGAACTACTGGGATGCTGATAAATTTGAGTTACTTTTAACTATTGAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTAGCAACCTTGGTGATTTTTTTGTCACGGGATCTGTTGATCGATCCATACGTTGCTGGGATCGTACTGATGAGCCATTTTTTTTGGATTTGAAATTTCAGGAAGAGAATCAGAAAAGGTTGTTAGAAAGTTATGAGTCTGAGCTCAAGCATGCAGTGGAAGAAGAAATTACTGAGAAGGGAGCTGTGGCCTTAGTGGGAAAGGAAAAAACAATTGATCTGACGGATGAACTTATTAATGCACTAGATGTAGCTGCTGAATATGAGGGGACAAAGTCCAGATCTGATCATGTTCTGTATGCACTTTCAAAGATTAAGAGTGATCTGGAGTTGGTGCTTCTGTGCTTACCGTTCACAGATGCTTTGAGGCTTTTGCCTTACTTGGAGGACCTTGCTTCATATCCTGACCAGGTTGAACTTGTTAGCAGGGTGGTTACATTCCTATTCCAGATGTATTTCCACCAGTTGGTTTCTACGCCAGCAATTAAACCTATATTAAATTCTCTGAAAGAGACTCTTTATCCCGGATTAAAGGAAAGGAAAGATATTATTGGTTACACCTCGCCGGGATCACAAATGTTGGATTCGAGATCAAATGTCAAACTCAAGTTTCCTCTAGATGCAAAAGAAGAGCGTGAAAGAAAAAAAATCAGACTCATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

859

Amino Acids

96.21

Weight (kDa)

5.81

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	20 - 177	1.6e-12	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	25 - 176	3.2e-29	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	28 - 220	3.9e-28	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	29 - 223	2.5e-23	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	31 - 221	7.9e-63	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	39 - 136	2.8e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	40 - 182	4.7e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	40 - 173	1.6e-13	WDR36/Utp21 first beta-propeller
Beta-prop_TEP1_2nd	PF25047	40 - 216	6.3e-13	TEP-1 second beta-propeller
Beta-prop_EML	PF23409	42 - 171	8.3e-11	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	43 - 116	6.1e-06	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	56 - 220	4.2e-24	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	56 - 175	7.1e-13	SCAP Beta-propeller
WDR55	PF24796	58 - 224	1.4e-13	WDR55
Beta-prop_IFT140_1st	PF23383	58 - 135	6.1e-06	IFT140 first beta-propeller
WD40	PF00400	60 - 90	2.2e-06	WD domain, G-beta repeat
Beta-prop_WDR75_1st	PF23869	65 - 134	7.4e-06	WD repeat-containing protein 75 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	75 - 175	3.3e-09	MABP1/WDR62 second WD40 domain
WD40	PF00400	96 - 132	1.9e-06	WD domain, G-beta repeat
EIF3I	PF24805	100 - 176	1.7e-09	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	102 - 223	6.1e-10	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	102 - 224	1.9e-11	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	114 - 291	1.6e-19	Prp19 WD40 domain
WD40	PF00400	140 - 174	4.4e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	142 - 223	3e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	183 - 227	7.2e-06	WDR3 second beta-propeller domain
WD40	PF00400	184 - 219	1.9e-06	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	332 - 432	4.3e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	354 - 505	2e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	354 - 502	2.7e-07	WDR5 beta-propeller domain
WD40	PF00400	399 - 432	5.9e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	408 - 608	3.1e-63	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	449 - 602	7e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	452 - 603	3.7e-12	Prp19 WD40 domain
WD40_Gbeta	PF25391	453 - 592	1.9e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	468 - 607	5.1e-14	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	468 - 596	8.6e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	477 - 594	4.8e-09	TEP-1 second beta-propeller
Beta-prop_EML_2	PF23414	480 - 595	1.1e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	518 - 600	1.4e-09	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	521 - 609	4.8e-09	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	522 - 599	2.2e-09	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	542 - 669	8.6e-10	Prp19 WD40 domain
EIF3I	PF24805	542 - 615	8.7e-07	EIF3I
WD40	PF00400	557 - 592	7.4e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	560 - 659	6.3e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	597 - 660	9.9e-08	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	608 - 672	2.5e-07	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	609 - 663	3.4e-17	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	610 - 660	9.4e-07	WDR5 beta-propeller domain
WD40	PF00400	621 - 658	7.1e-09	WD domain, G-beta repeat
Utp12	PF04003	742 - 831	4.1e-13	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
Acc36I	ACCTGC	2 cut(s)	206, 293
AccB7I	CCANNNNNTGG	1 cut(s)	2377
AccI	GTMKAC	1 cut(s)	1647
AccII	CGCG	2 cut(s)	126, 137
AciI	CCGC	4 cut(s)	36, 60, 206, 775
AclWI	GGATC	6 cut(s)	528, 1756, 1950, 1951, 1980, 2488
AcoI	YGGCCR	2 cut(s)	568, 682
AcsI	RAATTY	6 cut(s)	261, 582, 1105, 1856, 2006, 2410
AcuI	CTGAAG	2 cut(s)	1299, 1413
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	4 cut(s)	14, 77, 335, 1978
AfiI	CCNNNNNNNGG	4 cut(s)	376, 597, 925, 2377
AflII	CTTAAG	1 cut(s)	1343
AhlI	ACTAGT	1 cut(s)	1268
AjnI	CCWGG	3 cut(s)	111, 1203, 2319
Alw21I	GWGCWC	3 cut(s)	1203, 1244, 2058
Alw26I	GTCTC	6 cut(s)	428, 628, 966, 1027, 1521, 2417
AlwI	GGATC	6 cut(s)	528, 1756, 1950, 1951, 1980, 2488
Ama87I	CYCGRG	1 cut(s)	625
AoxI	GGCC	7 cut(s)	33, 108, 207, 367, 568, 682, 2100
ApeKI	GCWGC	4 cut(s)	121, 1058, 1696, 2165
ApoI	RAATTY	6 cut(s)	261, 582, 1105, 1856, 2006, 2410
ArsI	GACNNNNNNTTYG	2 cut(s)	1238, 1270
AseI	ATTAAT	1 cut(s)	2148
AspLEI	GCGC	3 cut(s)	126, 139, 909
AspS9I	GGNCC	5 cut(s)	33, 109, 588, 601, 2299
AsuC2I	CCSGG	3 cut(s)	1375, 2436, 2478
AsuHPI	GGTGA	8 cut(s)	16, 187, 204, 773, 970, 1202, 1555, 1937
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	3 cut(s)	588, 601, 2299
AxyI	CCTNAGG	1 cut(s)	954
BaeI	ACNNNNGTAYC	4 cut(s)	1266, 1299, 1563, 1596
BalI	TGGCCA	2 cut(s)	570, 684
BanII	GRGCYC	3 cut(s)	1203, 1244, 2058
Bbv12I	GWGCWC	3 cut(s)	1203, 1244, 2058
BbvI	GCAGC	4 cut(s)	108, 1045, 1683, 2152
BccI	CCATC	8 cut(s)	242, 397, 579, 955, 962, 1085, 1469, 1721
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	3 cut(s)	113, 1205, 2321
BciVI	GTATCC	1 cut(s)	1564
BclI	TGATCA	1 cut(s)	2197
BcnI	CCSGG	3 cut(s)	1375, 2436, 2478
BcoDI	GTCTC	6 cut(s)	428, 628, 966, 1027, 1521, 2417
BcuI	ACTAGT	1 cut(s)	1268
BfaI	CTAG	4 cut(s)	471, 1269, 2156, 2528
BfmI	CTRYAG	2 cut(s)	633, 1194
BfrI	CTTAAG	1 cut(s)	1343
BfuAI	ACCTGC	2 cut(s)	206, 293
BfuI	GTATCC	1 cut(s)	1564
BglII	AGATCT	2 cut(s)	1732, 2192
BisI	GCNGC	7 cut(s)	36, 122, 207, 776, 1059, 1697, 2166
BlsI	GCNGC	7 cut(s)	37, 123, 208, 777, 1060, 1698, 2167
Bme1390I	CCNGG	6 cut(s)	113, 1205, 1375, 2321, 2436, 2478
Bme18I	GGWCC	3 cut(s)	588, 601, 2299
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	5 cut(s)	33, 109, 588, 601, 2299
BmiI	GGNNCC	5 cut(s)	34, 85, 602, 603, 951
BmrFI	CCNGG	6 cut(s)	113, 1205, 1375, 2321, 2436, 2478
BmrI	ACTGGG	1 cut(s)	1852
BmsI	GCATC	6 cut(s)	148, 368, 1594, 1837, 2260, 2521
BmuI	ACTGGG	1 cut(s)	1852
BpmI	CTGGAG	4 cut(s)	384, 1011, 1187, 2258
BpuEI	CTTGAG	3 cut(s)	1737, 2042, 2501
BpuMI	CCSGG	3 cut(s)	1375, 2436, 2478
Bsa29I	ATCGAT	1 cut(s)	1954
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	1731
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	111, 427, 1204, 1921
BsaWI	WCCGGW	1 cut(s)	1745
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 151, 181
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 597, 925, 2377
Bse1I	ACTGG	2 cut(s)	1847, 2374
Bse21I	CCTNAGG	1 cut(s)	954
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	1731
BseBI	CCWGG	3 cut(s)	113, 1205, 2321
BseCI	ATCGAT	1 cut(s)	1954
BseDI	CCNNGG	4 cut(s)	111, 427, 1204, 1921
BseGI	GGATG	6 cut(s)	181, 400, 1480, 1720, 1852, 2143
BseJI	GATNNNNATC	1 cut(s)	1731
BseLI	CCNNNNNNNGG	4 cut(s)	376, 597, 925, 2377
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	7 cut(s)	31, 702, 945, 1229, 1257, 2043, 2076
BseNI	ACTGG	2 cut(s)	1847, 2374
BseXI	GCAGC	4 cut(s)	108, 1045, 1683, 2152
BseYI	CCCAGC	1 cut(s)	1968
BsgI	GTGCAG	1 cut(s)	1191
Bsh1236I	CGCG	2 cut(s)	126, 137
BshFI	GGCC	7 cut(s)	35, 110, 209, 369, 570, 684, 2102
BshVI	ATCGAT	1 cut(s)	1954
BsiHKAI	GWGCWC	3 cut(s)	1203, 1244, 2058
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	8 cut(s)	57, 87, 107, 919, 1374, 1746, 2436, 2477
BsiWI	CGTACG	1 cut(s)	75
BslFI	GGGAC	3 cut(s)	614, 1896, 2194
BslI	CCNNNNNNNGG	4 cut(s)	376, 597, 925, 2377
BsmAI	GTCTC	6 cut(s)	428, 628, 966, 1027, 1521, 2417
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	3 cut(s)	614, 1896, 2194
BsmI	GAATGC	1 cut(s)	1384
BsnI	GGCC	7 cut(s)	35, 110, 209, 369, 570, 684, 2102
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	3 cut(s)	1203, 1244, 2058
BspACI	CCGC	4 cut(s)	36, 60, 206, 775
BspANI	GGCC	7 cut(s)	35, 110, 209, 369, 570, 684, 2102
BspCNI	CTCAG	7 cut(s)	30, 703, 946, 1230, 1256, 2044, 2077
BspDI	ATCGAT	1 cut(s)	1954
BspFNI	CGCG	2 cut(s)	126, 137
BspHI	TCATGA	2 cut(s)	982, 2568
BspLI	GGNNCC	5 cut(s)	34, 85, 602, 603, 951
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	2 cut(s)	206, 293
BspPI	GGATC	6 cut(s)	528, 1756, 1950, 1951, 1980, 2488
BspQI	GCTCTTC	1 cut(s)	2535
BspTI	CTTAAG	1 cut(s)	1343
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	1847, 2374
BssECI	CCNNGG	4 cut(s)	111, 427, 1204, 1921
BssNAI	GTATAC	1 cut(s)	1648
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	1921
Bst1107I	GTATAC	1 cut(s)	1648
Bst2UI	CCWGG	3 cut(s)	113, 1205, 2321
Bst4CI	ACNGT	6 cut(s)	333, 856, 1021, 1387, 1639, 2262
Bst6I	CTCTTC	2 cut(s)	2010, 2535
BstACI	GRCGYC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	1343
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	9 cut(s)	92, 135, 435, 554, 831, 911, 1113, 2064, 2391
BstDSI	CCRYGG	1 cut(s)	427
BstEII	GGTNACC	2 cut(s)	193, 1208
BstF5I	GGATG	6 cut(s)	181, 400, 1480, 1720, 1852, 2143
BstFNI	CGCG	2 cut(s)	126, 137
BstHHI	GCGC	3 cut(s)	126, 139, 909
BstMAI	GTCTC	6 cut(s)	428, 628, 966, 1027, 1521, 2417
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 323, 915, 1121, 1702
BstNI	CCWGG	3 cut(s)	113, 1205, 2321
BstNSI	RCATGY	3 cut(s)	437, 556, 2066
BstPI	GGTNACC	2 cut(s)	193, 1208
BstSCI	CCNGG	6 cut(s)	111, 1203, 1373, 2319, 2434, 2476
BstSFI	CTRYAG	2 cut(s)	633, 1194
BstUI	CGCG	2 cut(s)	126, 137
BstV1I	GCAGC	4 cut(s)	108, 1045, 1683, 2152
BstX2I	RGATCY	5 cut(s)	520, 1732, 1748, 1943, 2192
BstXI	CCANNNNNNTGG	1 cut(s)	1567
BstYI	RGATCY	5 cut(s)	520, 1732, 1748, 1943, 2192
BstZ17I	GTATAC	1 cut(s)	1648
Bsu15I	ATCGAT	1 cut(s)	1954
Bsu36I	CCTNAGG	1 cut(s)	954
BsuI	GTATCC	1 cut(s)	1564
BsuRI	GGCC	7 cut(s)	35, 110, 209, 369, 570, 684, 2102
BsuTUI	ATCGAT	1 cut(s)	1954
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	6 cut(s)	181, 400, 1480, 1720, 1852, 2143
BtsI	GCAGTG	2 cut(s)	1179, 2073
BtsIMutI	CAGTG	8 cut(s)	276, 447, 1130, 1179, 1235, 1383, 1389, 2073
BveI	ACCTGC	2 cut(s)	206, 293
Cac8I	GCNNGC	9 cut(s)	92, 135, 435, 554, 831, 911, 1113, 2064, 2391
CciI	TCATGA	2 cut(s)	982, 2568
CfoI	GCGC	3 cut(s)	126, 139, 909
Cfr13I	GGNCC	5 cut(s)	33, 109, 588, 601, 2299
ClaI	ATCGAT	1 cut(s)	1954
CseI	GACGC	1 cut(s)	34
CsiI	ACCWGGT	1 cut(s)	2319
Csp6I	GTAC	4 cut(s)	13, 76, 334, 1977
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviQI	GTAC	4 cut(s)	13, 76, 334, 1977
EaeI	YGGCCR	2 cut(s)	568, 682
Eam1104I	CTCTTC	2 cut(s)	2010, 2535
EarI	CTCTTC	2 cut(s)	2010, 2535
Ecl136II	GAGCTC	3 cut(s)	1201, 1242, 2056
Eco130I	CCWWGG	1 cut(s)	1921
Eco24I	GRGCYC	3 cut(s)	1203, 1244, 2058
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	3 cut(s)	588, 601, 2299
Eco53kI	GAGCTC	3 cut(s)	1201, 1242, 2056
Eco57I	CTGAAG	2 cut(s)	1299, 1413
Eco81I	CCTNAGG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	625
Eco91I	GGTNACC	2 cut(s)	193, 1208
EcoICRI	GAGCTC	3 cut(s)	1201, 1242, 2056
EcoO109I	RGGNCCY	2 cut(s)	601, 2299
EcoO65I	GGTNACC	2 cut(s)	193, 1208
EcoRII	CCWGG	3 cut(s)	111, 1203, 2319
EcoRV	GATATC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	1921
EcoT38I	GRGCYC	3 cut(s)	1203, 1244, 2058
ErhI	CCWWGG	1 cut(s)	1921
Esp3I	CGTCTC	1 cut(s)	428
FalI	AAGNNNNNCTT	6 cut(s)	656, 688, 1272, 1304, 2412, 2444
FaqI	GGGAC	3 cut(s)	614, 1896, 2194
FbaI	TGATCA	1 cut(s)	2197
FblI	GTMKAC	1 cut(s)	1647
Fnu4HI	GCNGC	7 cut(s)	36, 122, 207, 776, 1059, 1697, 2166
FokI	GGATG	6 cut(s)	168, 407, 1487, 1727, 1859, 2150
FriOI	GRGCYC	3 cut(s)	1203, 1244, 2058
Fsp4HI	GCNGC	7 cut(s)	36, 122, 207, 776, 1059, 1697, 2166
FspBI	CTAG	4 cut(s)	471, 1269, 2156, 2528
GlaI	GCGC	3 cut(s)	125, 138, 908
GluI	GCNGC	7 cut(s)	36, 122, 207, 776, 1059, 1697, 2166
GsaI	CCCAGC	1 cut(s)	1972
GsuI	CTGGAG	4 cut(s)	384, 1011, 1187, 2258
HaeIII	GGCC	7 cut(s)	35, 110, 209, 369, 570, 684, 2102
HapII	CCGG	8 cut(s)	57, 87, 107, 919, 1374, 1746, 2436, 2477
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	3 cut(s)	126, 139, 909
Hin1I	GRCGYC	1 cut(s)	45
Hin6I	GCGC	3 cut(s)	124, 137, 907
HinP1I	GCGC	3 cut(s)	124, 137, 907
HincII	GTYRAC	1 cut(s)	1266
HindII	GTYRAC	1 cut(s)	1266
HindIII	AAGCTT	1 cut(s)	1286
HpaII	CCGG	8 cut(s)	57, 87, 107, 919, 1374, 1746, 2436, 2477
HphI	GGTGA	8 cut(s)	16, 187, 204, 773, 970, 1202, 1555, 1937
Hpy166II	GTNNAC	4 cut(s)	1266, 1648, 1837, 2265
Hpy8I	GTNNAC	4 cut(s)	1266, 1648, 1837, 2265
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	9 cut(s)	49, 180, 505, 671, 919, 992, 1160, 1321, 2083
HpyCH4III	ACNGT	6 cut(s)	333, 856, 1021, 1387, 1639, 2262
HpyCH4IV	ACGT	3 cut(s)	74, 1578, 1963
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 323, 915, 1121, 1702
HpySE526I	ACGT	3 cut(s)	74, 1578, 1963
Hsp92I	GRCGYC	1 cut(s)	45
HspAI	GCGC	3 cut(s)	124, 137, 907
KflI	GGGWCCC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	2197
LguI	GCTCTTC	1 cut(s)	2535
LmnI	GCTCC	6 cut(s)	89, 109, 949, 1206, 1821, 2093
Lsp1109I	GCAGC	4 cut(s)	108, 1045, 1683, 2152
LweI	GCATC	6 cut(s)	148, 368, 1594, 1837, 2260, 2521
MabI	ACCWGGT	1 cut(s)	2319
MaeI	CTAG	4 cut(s)	471, 1269, 2156, 2528
MaeII	ACGT	3 cut(s)	74, 1578, 1963
MfeI	CAATTG	1 cut(s)	2124
MflI	RGATCY	5 cut(s)	520, 1732, 1748, 1943, 2192
MhlI	GDGCHC	3 cut(s)	1203, 1244, 2058
MlsI	TGGCCA	2 cut(s)	570, 684
MluNI	TGGCCA	2 cut(s)	570, 684
MlyI	GAGTC	4 cut(s)	1625, 2057, 2419, 2559
MmeI	TCCRAC	3 cut(s)	1128, 1317, 2472
Mox20I	TGGCCA	2 cut(s)	570, 684
MscI	TGGCCA	2 cut(s)	570, 684
MseI	TTAA	9 cut(s)	663, 1344, 1485, 1871, 2148, 2226, 2397, 2408, 2441
MslI	CAYNNNNRTG	4 cut(s)	432, 576, 1565, 1893
Msp20I	TGGCCA	2 cut(s)	570, 684
MspCI	CTTAAG	1 cut(s)	1343
MspI	CCGG	8 cut(s)	57, 87, 107, 919, 1374, 1746, 2436, 2477
MspR9I	CCNGG	6 cut(s)	113, 1205, 1375, 2321, 2436, 2478
MunI	CAATTG	1 cut(s)	2124
Mva1269I	GAATGC	1 cut(s)	1384
MvaI	CCWGG	3 cut(s)	113, 1205, 2321
MvnI	CGCG	2 cut(s)	126, 137
MwoI	GCNNNNNNNGC	5 cut(s)	130, 323, 915, 1121, 1702
NciI	CCSGG	3 cut(s)	1375, 2436, 2478
NlaIV	GGNNCC	5 cut(s)	34, 85, 602, 603, 951
NspI	RCATGY	3 cut(s)	437, 556, 2066
PaeI	GCATGC	3 cut(s)	437, 556, 2066
PagI	TCATGA	2 cut(s)	982, 2568
PaqCI	CACCTGC	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	2535
PcsI	WCGNNNNNNNCGW	2 cut(s)	435, 1960
PctI	GAATGC	1 cut(s)	1384
PfeI	GAWTC	8 cut(s)	269, 467, 535, 887, 1294, 1526, 2020, 2495
Pfl23II	CGTACG	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	2185
PflMI	CCANNNNNTGG	1 cut(s)	2377
PfoI	TCCNGGA	1 cut(s)	2434
PkrI	GCNGC	7 cut(s)	37, 123, 208, 777, 1060, 1698, 2167
PleI	GAGTC	4 cut(s)	1625, 2056, 2419, 2559
PpsI	GAGTC	4 cut(s)	1625, 2056, 2419, 2559
Ppu21I	YACGTR	1 cut(s)	75
PpuMI	RGGWCCY	2 cut(s)	601, 2299
PshBI	ATTAAT	1 cut(s)	2148
Psp124BI	GAGCTC	3 cut(s)	1203, 1244, 2058
Psp5II	RGGWCCY	2 cut(s)	601, 2299
Psp6I	CCWGG	3 cut(s)	111, 1203, 2319
PspEI	GGTNACC	2 cut(s)	193, 1208
PspFI	CCCAGC	1 cut(s)	1968
PspGI	CCWGG	3 cut(s)	111, 1203, 2319
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	5 cut(s)	34, 85, 602, 603, 951
PspPI	GGNCC	5 cut(s)	33, 109, 588, 601, 2299
PspPPI	RGGWCCY	2 cut(s)	601, 2299
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	5 cut(s)	520, 1732, 1748, 1943, 2192
PsyI	GACNNNGTC	1 cut(s)	2185
RsaI	GTAC	4 cut(s)	14, 77, 335, 1978
RsaNI	GTAC	4 cut(s)	13, 76, 334, 1977
RseI	CAYNNNNRTG	4 cut(s)	432, 576, 1565, 1893
SacI	GAGCTC	3 cut(s)	1203, 1244, 2058
SapI	GCTCTTC	1 cut(s)	2535
SaqAI	TTAA	9 cut(s)	663, 1344, 1485, 1871, 2148, 2226, 2397, 2408, 2441
SatI	GCNGC	7 cut(s)	36, 122, 207, 776, 1059, 1697, 2166
Sau96I	GGNCC	5 cut(s)	33, 109, 588, 601, 2299
SchI	GAGTC	4 cut(s)	1625, 2057, 2419, 2559
ScrFI	CCNGG	6 cut(s)	113, 1205, 1375, 2321, 2436, 2478
SduI	GDGCHC	3 cut(s)	1203, 1244, 2058
SexAI	ACCWGGT	1 cut(s)	2319
SfaNI	GCATC	6 cut(s)	148, 368, 1594, 1837, 2260, 2521
SfcI	CTRYAG	2 cut(s)	633, 1194
SinI	GGWCC	3 cut(s)	588, 601, 2299
SmiMI	CAYNNNNRTG	4 cut(s)	432, 576, 1565, 1893
SmlI	CTYRAG	4 cut(s)	1343, 1752, 2057, 2516
SmoI	CTYRAG	4 cut(s)	1343, 1752, 2057, 2516
SpeI	ACTAGT	1 cut(s)	1268
SphI	GCATGC	3 cut(s)	437, 556, 2066
SsiI	CCGC	4 cut(s)	36, 60, 206, 775
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	4 cut(s)	471, 1269, 2156, 2528
SstI	GAGCTC	3 cut(s)	1203, 1244, 2058
StyD4I	CCNGG	6 cut(s)	111, 1203, 1373, 2319, 2434, 2476
StyI	CCWWGG	1 cut(s)	1921
TaaI	ACNGT	6 cut(s)	333, 856, 1021, 1387, 1639, 2262
TaiI	ACGT	3 cut(s)	77, 1581, 1966
TaqI	TCGA	3 cut(s)	1054, 1954, 2498
TaqII	GACCGA	1 cut(s)	654
TauI	GCSGC	3 cut(s)	38, 209, 778
TfiI	GAWTC	8 cut(s)	269, 467, 535, 887, 1294, 1526, 2020, 2495
Tru1I	TTAA	9 cut(s)	663, 1344, 1485, 1871, 2148, 2226, 2397, 2408, 2441
Tru9I	TTAA	9 cut(s)	663, 1344, 1485, 1871, 2148, 2226, 2397, 2408, 2441
TscAI	CASTG	8 cut(s)	283, 454, 1137, 1179, 1242, 1390, 1396, 2073
TseI	GCWGC	4 cut(s)	121, 1058, 1696, 2165
TspDTI	ATGAA	8 cut(s)	624, 999, 1461, 1515, 1577, 1805, 2154, 2298
TspGWI	ACGGA	1 cut(s)	2150
TspRI	CASTG	8 cut(s)	283, 454, 1137, 1179, 1242, 1390, 1396, 2073
Tth111I	GACNNNGTC	1 cut(s)	2185
Van91I	CCANNNNNTGG	1 cut(s)	2377
Vha464I	CTTAAG	1 cut(s)	1343
VpaK11BI	GGWCC	3 cut(s)	588, 601, 2299
VspI	ATTAAT	1 cut(s)	2148
XapI	RAATTY	6 cut(s)	261, 582, 1105, 1856, 2006, 2410
XbaI	TCTAGA	1 cut(s)	2527
XceI	RCATGY	3 cut(s)	437, 556, 2066
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1615
XmiI	GTMKAC	1 cut(s)	1647
XspI	CTAG	4 cut(s)	471, 1269, 2156, 2528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.