Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

86832438 .. 86835766

Gene Structure 3329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGGTGAAGTCGTACCTCAGATACGAGCAGGGGGCCGCCTTCGGCGTCATAGTGTTCGGCGGTTCAAACATCACGTACGACGGCTCCGGCAAGCACCTTGTTGCTATGGCCCTGGAAACGCTGCACGTGTGGCACGCGCGTCAAGGCATTTGCTCCAAAACCCTAACTCCTTCTCTGGAACATCCTACTTTGATAGCCTGTGGGTATGGAGATGGTAGTATAAGAATTTGGGATTCTGACACTGAAACCTGCGACAACATTTTCAATTGGCATAATGGGGCTGTTACTGCCTTACGGTACAATGAGCGTGGGGATATGGTTGCATCTGGAGGCCAAGACAAGGACATTGTATTATGGGATGTGGAGATGGGCGAGGGCAGATATCGTCTCCGCAGGCACGCCGATCAGGTTTTATTCTATGTGGGATCTTGGAAACTTGAATCAAACCCCGTATTGCATGCAGATCATAGTGAAATTTGGTCCATAGATAGGGATCCAGATGAAAAGTATTTAGTCTCAGGGTCTGCAGACCGAGAACTAAGATTTTACACAATTAAGCATAACTTGGAAGGTGGCCAATCCATTTCTAATGGGAATGGAACTGAGATTGTGAGCTTTGAAGATAACAAATGGGAAGTTTTGAAGCTGTTTGGTGAATATAATAAGCGGCAAAGCAAGTATAGAGTTGCAACTGTAAGGTTCAACAAGTCTGGAAACTTGCTGGCTTGTCAAGAGGCAGGAAAGACAGTAGAAATATCCAATGTGTTGAATGAGGCTGAATCAAAGCGTAAAGCAAAGCGCAGGCTTCGCCGGAAGAAAGAGAAGAAAAATGCAAAAGGGGAGCCTGAGGTGATGGAAGATGGAGACACAAATCATGAAGCTGGAGAAGAAGGAAATAATCATGTGGTTACTGTCTCTGATGTCTTTGAACATCTCCAAACTATTCGAGCTGCCAAAAAGATATTGACAAAAAAAACACATACTATAGAGCTCCAGGGTCACCGATCTTCTATTAGAAGTTTGACACTGAGCTCAGACAACAGCTTTGTGATGTCAACTAGTGATACTGAAGTCAAGCTTTGGAATCCTAGTACCGGTAACTGCCTTCATACTATTGACATTCCAAATCTAGTGAGTGGTTTTATCCTTCACAATAACAAATATGCACTTGTTGGATCTAAGGGTGGAAATATGGAGATTATTGACACCGGGAATGCCACTGTCACTGAAGTAGTGGAAGCTCATGGTGGTTCTGTTCAATCTATTGTAAGACTTCCCAATGAAAATGGTTTTGTCACAGGAAGTTTGGATGGTTATGTTAAGTTCTGGGAATATGAAGTCAAACAAAAGTCTCCCCAAGTATACTATATGGACAAGCTCAATCCTTTCCTTACCTTATTTGGTCATAAGCTGCCTGTGCTATGTATGGATGCATCATCTGATGGAGATCTGATAGTGACTGGATCTCAAGACAAAAATTTAAAGATTTGGGGTTTAGATTTTGGCGACTGCCACAAATCAATGTTCTTTCATAGGAGCAGTGTTAAGCAAGTTAAATTTGTGTCAAATACCCATTACGTGGTTAGTGTTGGTAAAGATAAGCAAGTGAACTACTGGGATGCTGATAAATTTGAGTTACTTTTAACTATTGAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTAGCAACCTTGGTGATTTTTTTGTTACGGGATCTGTTGATCGATCCATATGTTGCTGGGATCGTACTGACAAGCCATTTTTTTGGAGTTACTTGCTTCTTCTTAAGGAAGAACGCCTTTTTTCCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

604

Amino Acids

67.98

Weight (kDa)

6.3

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	32 - 138	3.8e-24	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	44 - 182	1.4e-06	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	61 - 137	4.7e-09	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	61 - 133	3.1e-10	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	63 - 241	2.8e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	63 - 121	2.1e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	64 - 137	2.3e-13	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	67 - 124	2.5e-06	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	323 - 446	1.3e-06	WDR55
Beta-prop_THOC3	PF25174	323 - 542	1.4e-25	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	324 - 540	2.4e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	324 - 396	1.8e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	325 - 449	6.4e-12	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	325 - 581	2.3e-22	CDC20/Fizzy WD40 domain
WD40	PF00400	329 - 362	6.8e-06	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	331 - 445	5.2e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	338 - 450	9.3e-27	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	345 - 521	4.9e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	390 - 554	1.4e-09	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	404 - 582	4.3e-09	G protein beta WD-40 repeat protein
EIF3I	PF24805	448 - 521	1.1e-06	EIF3I
WD40_WDHD1_1st	PF24817	451 - 550	5.1e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	453 - 587	5.2e-61	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	453 - 584	8.4e-23	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	454 - 582	6.3e-22	WDR3 first beta-propeller domain
WD40	PF00400	463 - 497	8e-08	WD domain, G-beta repeat
WD40_Prp19	PF24814	473 - 584	3.8e-17	Prp19 WD40 domain
WD40_MABP1-WDR62_1st	PF24780	475 - 580	6.8e-07	MABP1/WDR62 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	480 - 582	6.7e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	511 - 583	1.6e-07	EIF3I
Beta-prop_THOC3	PF25174	512 - 583	1.5e-09	THOC3 beta-propeller domain
WD40	PF00400	545 - 582	1.5e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	1579
AccI	GTMKAC	1 cut(s)	1362
AccII	CGCG	2 cut(s)	137, 139
AciI	CCGC	4 cut(s)	36, 60, 391, 667
AclWI	GGATC	8 cut(s)	433, 488, 501, 1183, 1471, 1722, 1723, 1752
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	5 cut(s)	225, 474, 1477, 1556, 1628
AcuI	CTGAAG	2 cut(s)	1089, 1248
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	5 cut(s)	14, 77, 299, 1093, 1750
AfiI	CCNNNNNNNGG	4 cut(s)	340, 489, 1094, 1579
AflII	CTTAAG	1 cut(s)	1787
AflIII	ACRYGT	1 cut(s)	126
AgeI	ACCGGT	1 cut(s)	1094
AgsI	TTSAA	9 cut(s)	66, 265, 440, 620, 643, 703, 769, 929, 1259
AhlI	ACTAGT	1 cut(s)	1058
AjnI	CCWGG	2 cut(s)	111, 993
Alw21I	GWGCWC	2 cut(s)	993, 1034
Alw26I	GTCTC	5 cut(s)	392, 520, 858, 919, 1356
AlwI	GGATC	8 cut(s)	433, 488, 501, 1183, 1471, 1722, 1723, 1752
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	4 cut(s)	33, 108, 331, 574
ApeKI	GCWGC	3 cut(s)	121, 950, 1411
ApoI	RAATTY	5 cut(s)	225, 474, 1477, 1556, 1628
ArsI	GACNNNNNNTTYG	2 cut(s)	1028, 1060
AsiGI	ACCGGT	1 cut(s)	1094
AspLEI	GCGC	2 cut(s)	139, 801
AspS9I	GGNCC	3 cut(s)	33, 109, 480
AsuC2I	CCSGG	1 cut(s)	1210
AsuHPI	GGTGA	5 cut(s)	16, 665, 862, 992, 1709
AvaII	GGWCC	1 cut(s)	480
AxyI	CCTNAGG	1 cut(s)	846
BaeI	ACNNNNGTAYC	2 cut(s)	1056, 1089
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	493
BanII	GRGCYC	2 cut(s)	993, 1034
BbrPI	CACGTG	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	993, 1034
BbvI	GCAGC	3 cut(s)	108, 937, 1398
BccI	CCATC	6 cut(s)	206, 361, 847, 854, 1304, 1436
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	113, 995
BcnI	CCSGG	1 cut(s)	1210
BcoDI	GTCTC	5 cut(s)	392, 520, 858, 919, 1356
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	3 cut(s)	1059, 1089, 1130
BfmI	CTRYAG	2 cut(s)	525, 984
BfrI	CTTAAG	1 cut(s)	1787
BfuAI	ACCTGC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	1447
BisI	GCNGC	5 cut(s)	36, 122, 668, 951, 1412
BlsI	GCNGC	5 cut(s)	37, 123, 669, 952, 1413
Bme1390I	CCNGG	3 cut(s)	113, 995, 1210
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	3 cut(s)	33, 109, 480
BmiI	GGNNCC	4 cut(s)	34, 85, 495, 843
BmrFI	CCNGG	3 cut(s)	113, 995, 1210
BmrI	ACTGGG	1 cut(s)	1624
BmsI	GCATC	4 cut(s)	332, 1420, 1442, 1609
BmuI	ACTGGG	1 cut(s)	1624
BpmI	CTGGAG	3 cut(s)	348, 903, 977
BpuEI	CTTGAG	1 cut(s)	1452
BpuMI	CCSGG	1 cut(s)	1210
Bsa29I	ATCGAT	1 cut(s)	1726
BsaAI	YACGTR	3 cut(s)	75, 127, 1579
BsaBI	GATNNNNATC	2 cut(s)	492, 1446
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	111, 994, 1693
BsaWI	WCCGGW	1 cut(s)	1094
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 151, 181
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 489, 1094, 1579
Bse118I	RCCGGY	1 cut(s)	1094
Bse1I	ACTGG	2 cut(s)	1465, 1619
Bse21I	CCTNAGG	1 cut(s)	846
Bse8I	GATNNNNATC	2 cut(s)	492, 1446
BseBI	CCWGG	2 cut(s)	113, 995
BseCI	ATCGAT	1 cut(s)	1726
BseDI	CCNNGG	3 cut(s)	111, 994, 1693
BseGI	GGATG	5 cut(s)	181, 364, 1315, 1435, 1624
BseJI	GATNNNNATC	2 cut(s)	492, 1446
BseLI	CCNNNNNNNGG	4 cut(s)	340, 489, 1094, 1579
BseMII	CTCAG	6 cut(s)	31, 531, 594, 837, 1019, 1047
BseNI	ACTGG	2 cut(s)	1465, 1619
BseXI	GCAGC	3 cut(s)	108, 937, 1398
BseYI	CCCAGC	1 cut(s)	1740
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	2 cut(s)	137, 139
BshFI	GGCC	4 cut(s)	35, 110, 333, 576
BshTI	ACCGGT	1 cut(s)	1094
BshVI	ATCGAT	1 cut(s)	1726
BsiHKAI	GWGCWC	2 cut(s)	993, 1034
BsiSI	CCGG	4 cut(s)	87, 811, 1095, 1209
BsiWI	CGTACG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	1668
BslI	CCNNNNNNNGG	4 cut(s)	340, 489, 1094, 1579
BsmAI	GTCTC	5 cut(s)	392, 520, 858, 919, 1356
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	1668
BsmI	GAATGC	1 cut(s)	1219
BsnI	GGCC	4 cut(s)	35, 110, 333, 576
Bsp1286I	GDGCHC	2 cut(s)	993, 1034
BspACI	CCGC	4 cut(s)	36, 60, 391, 667
BspANI	GGCC	4 cut(s)	35, 110, 333, 576
BspCNI	CTCAG	6 cut(s)	30, 530, 595, 838, 1020, 1046
BspDI	ATCGAT	1 cut(s)	1726
BspFNI	CGCG	2 cut(s)	137, 139
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	4 cut(s)	34, 85, 495, 843
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	8 cut(s)	433, 488, 501, 1183, 1471, 1722, 1723, 1752
BspTI	CTTAAG	1 cut(s)	1787
BsrFI	RCCGGY	1 cut(s)	1094
BsrI	ACTGG	2 cut(s)	1465, 1619
BssAI	RCCGGY	1 cut(s)	1094
BssECI	CCNNGG	3 cut(s)	111, 994, 1693
BssNAI	GTATAC	1 cut(s)	1363
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	1693
Bst1107I	GTATAC	1 cut(s)	1363
Bst2UI	CCWGG	2 cut(s)	113, 995
Bst4CI	ACNGT	5 cut(s)	297, 694, 748, 913, 1222
BstACI	GRCGYC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	1787
BstBAI	YACGTR	3 cut(s)	75, 127, 1579
BstC8I	GCNNGC	7 cut(s)	92, 135, 395, 399, 459, 723, 803
BstDEI	CTNAG	8 cut(s)	17, 517, 539, 603, 846, 1028, 1033, 1179
BstEII	GGTNACC	1 cut(s)	998
BstF5I	GGATG	5 cut(s)	181, 364, 1315, 1435, 1624
BstFNI	CGCG	2 cut(s)	137, 139
BstHHI	GCGC	2 cut(s)	139, 801
BstMAI	GTCTC	5 cut(s)	392, 520, 858, 919, 1356
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 287, 807, 1417
BstNI	CCWGG	2 cut(s)	113, 995
BstNSI	RCATGY	1 cut(s)	461
BstPI	GGTNACC	1 cut(s)	998
BstSCI	CCNGG	3 cut(s)	111, 993, 1208
BstSFI	CTRYAG	2 cut(s)	525, 984
BstUI	CGCG	2 cut(s)	137, 139
BstV1I	GCAGC	3 cut(s)	108, 937, 1398
BstX2I	RGATCY	6 cut(s)	425, 493, 1175, 1447, 1463, 1715
BstXI	CCANNNNNNTGG	1 cut(s)	1767
BstYI	RGATCY	6 cut(s)	425, 493, 1175, 1447, 1463, 1715
BstZ17I	GTATAC	1 cut(s)	1363
Bsu15I	ATCGAT	1 cut(s)	1726
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	4 cut(s)	35, 110, 333, 576
BsuTUI	ATCGAT	1 cut(s)	1726
BtsCI	GGATG	5 cut(s)	181, 364, 1315, 1435, 1624
BtsI	GCAGTG	1 cut(s)	1546
BtsIMutI	CAGTG	5 cut(s)	240, 1025, 1218, 1224, 1546
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	7 cut(s)	92, 135, 395, 399, 459, 723, 803
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	2 cut(s)	139, 801
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	3 cut(s)	33, 109, 480
ClaI	ATCGAT	1 cut(s)	1726
CseI	GACGC	2 cut(s)	34, 128
Csp6I	GTAC	5 cut(s)	13, 76, 298, 1092, 1749
CspAI	ACCGGT	1 cut(s)	1094
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	5 cut(s)	458, 875, 902, 1244, 1661
CviQI	GTAC	5 cut(s)	13, 76, 298, 1092, 1749
DdeI	CTNAG	8 cut(s)	17, 517, 539, 603, 846, 1028, 1033, 1179
DraI	TTTAAA	1 cut(s)	1482
EaeI	YGGCCR	1 cut(s)	574
Ecl136II	GAGCTC	2 cut(s)	991, 1032
Eco130I	CCWWGG	1 cut(s)	1693
Eco24I	GRGCYC	2 cut(s)	993, 1034
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	480
Eco53kI	GAGCTC	2 cut(s)	991, 1032
Eco57I	CTGAAG	2 cut(s)	1089, 1248
Eco72I	CACGTG	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	846
Eco91I	GGTNACC	1 cut(s)	998
EcoICRI	GAGCTC	2 cut(s)	991, 1032
EcoO65I	GGTNACC	1 cut(s)	998
EcoRII	CCWGG	2 cut(s)	111, 993
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	1693
EcoT22I	ATGCAT	1 cut(s)	1435
EcoT38I	GRGCYC	2 cut(s)	993, 1034
ErhI	CCWWGG	1 cut(s)	1693
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	5 cut(s)	461, 878, 905, 1247, 1664
FalI	AAGNNNNNCTT	5 cut(s)	548, 580, 1062, 1094, 1785
FaqI	GGGAC	1 cut(s)	1668
FatI	CATG	5 cut(s)	457, 874, 901, 1243, 1660
FauNDI	CATATG	1 cut(s)	1733
FblI	GTMKAC	1 cut(s)	1362
Fnu4HI	GCNGC	5 cut(s)	36, 122, 668, 951, 1412
FokI	GGATG	5 cut(s)	168, 371, 1322, 1442, 1631
FriOI	GRGCYC	2 cut(s)	993, 1034
Fsp4HI	GCNGC	5 cut(s)	36, 122, 668, 951, 1412
FspBI	CTAG	3 cut(s)	1059, 1089, 1130
GlaI	GCGC	2 cut(s)	138, 800
GluI	GCNGC	5 cut(s)	36, 122, 668, 951, 1412
GsaI	CCCAGC	1 cut(s)	1744
GsuI	CTGGAG	3 cut(s)	348, 903, 977
HaeIII	GGCC	4 cut(s)	35, 110, 333, 576
HapII	CCGG	4 cut(s)	87, 811, 1095, 1209
HgaI	GACGC	2 cut(s)	34, 128
HhaI	GCGC	2 cut(s)	139, 801
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	461, 878, 905, 1247, 1664
Hin6I	GCGC	2 cut(s)	137, 799
HinP1I	GCGC	2 cut(s)	137, 799
HincII	GTYRAC	1 cut(s)	1056
HindII	GTYRAC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	1076
HinfI	GANTC	4 cut(s)	233, 440, 779, 1084
HpaII	CCGG	4 cut(s)	87, 811, 1095, 1209
HphI	GGTGA	5 cut(s)	16, 665, 862, 992, 1709
Hpy166II	GTNNAC	3 cut(s)	1056, 1363, 1609
Hpy188I	TCNGA	6 cut(s)	20, 238, 919, 1036, 1441, 1452
Hpy188III	TCNNGA	7 cut(s)	176, 327, 497, 711, 731, 875, 1469
Hpy8I	GTNNAC	3 cut(s)	1056, 1363, 1609
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	6 cut(s)	49, 180, 563, 884, 1115, 1157
HpyCH4III	ACNGT	5 cut(s)	297, 694, 748, 913, 1222
HpyCH4IV	ACGT	3 cut(s)	74, 126, 1578
HpyCH4V	TGCA	9 cut(s)	124, 323, 457, 461, 527, 689, 833, 1166, 1433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 287, 807, 1417
HpyF3I	CTNAG	8 cut(s)	17, 517, 539, 603, 846, 1028, 1033, 1179
HpySE526I	ACGT	3 cut(s)	74, 126, 1578
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	461, 878, 905, 1247, 1664
HspAI	GCGC	2 cut(s)	137, 799
LmnI	GCTCC	5 cut(s)	89, 158, 841, 996, 1536
Lsp1109I	GCAGC	3 cut(s)	108, 937, 1398
LweI	GCATC	4 cut(s)	332, 1420, 1442, 1609
MaeI	CTAG	3 cut(s)	1059, 1089, 1130
MaeII	ACGT	3 cut(s)	74, 126, 1578
MboII	GAAGA	8 cut(s)	632, 826, 835, 869, 899, 999, 1775, 1805
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	6 cut(s)	425, 493, 1175, 1447, 1463, 1715
MhlI	GDGCHC	2 cut(s)	993, 1034
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	7 cut(s)	225, 265, 474, 552, 1477, 1556, 1628
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	1153
MnlI	CCTC	9 cut(s)	26, 323, 367, 727, 766, 841, 1645, 1657, 1688
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	1435
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	7 cut(s)	555, 1320, 1481, 1545, 1554, 1643, 1788
MslI	CAYNNNNRTG	1 cut(s)	1665
Msp20I	TGGCCA	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	1787
MspI	CCGG	4 cut(s)	87, 811, 1095, 1209
MspR9I	CCNGG	3 cut(s)	113, 995, 1210
MunI	CAATTG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	1219
MvaI	CCWGG	2 cut(s)	113, 995
MvnI	CGCG	2 cut(s)	137, 139
MwoI	GCNNNNNNNGC	4 cut(s)	130, 287, 807, 1417
NciI	CCSGG	1 cut(s)	1210
NdeI	CATATG	1 cut(s)	1733
NlaIII	CATG	5 cut(s)	461, 878, 905, 1247, 1664
NlaIV	GGNNCC	4 cut(s)	34, 85, 495, 843
NmuCI	GTSAC	4 cut(s)	998, 1222, 1294, 1456
NsiI	ATGCAT	1 cut(s)	1435
NspI	RCATGY	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	461
PagI	TCATGA	1 cut(s)	874
PctI	GAATGC	1 cut(s)	1219
PfeI	GAWTC	4 cut(s)	233, 440, 779, 1084
Pfl23II	CGTACG	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	1579
PinAI	ACCGGT	1 cut(s)	1094
PkrI	GCNGC	5 cut(s)	37, 123, 669, 952, 1413
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
Ppu21I	YACGTR	3 cut(s)	75, 127, 1579
Psp124BI	GAGCTC	2 cut(s)	993, 1034
Psp6I	CCWGG	2 cut(s)	111, 993
PspCI	CACGTG	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	998
PspFI	CCCAGC	1 cut(s)	1740
PspGI	CCWGG	2 cut(s)	111, 993
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	34, 85, 495, 843
PspPI	GGNCC	3 cut(s)	33, 109, 480
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	6 cut(s)	425, 493, 1175, 1447, 1463, 1715
RsaI	GTAC	5 cut(s)	14, 77, 299, 1093, 1750
RsaNI	GTAC	5 cut(s)	13, 76, 298, 1092, 1749
RseI	CAYNNNNRTG	1 cut(s)	1665
SacI	GAGCTC	2 cut(s)	993, 1034
SaqAI	TTAA	7 cut(s)	555, 1320, 1481, 1545, 1554, 1643, 1788
SatI	GCNGC	5 cut(s)	36, 122, 668, 951, 1412
Sau96I	GGNCC	3 cut(s)	33, 109, 480
ScrFI	CCNGG	3 cut(s)	113, 995, 1210
SduI	GDGCHC	2 cut(s)	993, 1034
SfaNI	GCATC	4 cut(s)	332, 1420, 1442, 1609
SfcI	CTRYAG	2 cut(s)	525, 984
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	1665
SmlI	CTYRAG	2 cut(s)	1467, 1787
SmoI	CTYRAG	2 cut(s)	1467, 1787
SpeI	ACTAGT	1 cut(s)	1058
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	7 cut(s)	225, 265, 474, 552, 1477, 1556, 1628
SsiI	CCGC	4 cut(s)	36, 60, 391, 667
SspMI	CTAG	3 cut(s)	1059, 1089, 1130
SstI	GAGCTC	2 cut(s)	993, 1034
StyD4I	CCNGG	3 cut(s)	111, 993, 1208
StyI	CCWWGG	1 cut(s)	1693
TaaI	ACNGT	5 cut(s)	297, 694, 748, 913, 1222
TaiI	ACGT	3 cut(s)	77, 129, 1581
TaqI	TCGA	2 cut(s)	946, 1726
TaqII	GACCGA	1 cut(s)	546
TasI	AATT	7 cut(s)	225, 265, 474, 552, 1477, 1556, 1628
TauI	GCSGC	2 cut(s)	38, 670
TfiI	GAWTC	4 cut(s)	233, 440, 779, 1084
Tru1I	TTAA	7 cut(s)	555, 1320, 1481, 1545, 1554, 1643, 1788
Tru9I	TTAA	7 cut(s)	555, 1320, 1481, 1545, 1554, 1643, 1788
TscAI	CASTG	5 cut(s)	247, 1032, 1225, 1231, 1546
TseFI	GTSAC	4 cut(s)	998, 1222, 1294, 1456
TseI	GCWGC	3 cut(s)	121, 950, 1411
Tsp45I	GTSAC	4 cut(s)	998, 1222, 1294, 1456
TspDTI	ATGAA	6 cut(s)	516, 891, 1097, 1296, 1350, 1520
TspRI	CASTG	5 cut(s)	247, 1032, 1225, 1231, 1546
Van91I	CCANNNNNTGG	1 cut(s)	1579
Vha464I	CTTAAG	1 cut(s)	1787
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	5 cut(s)	225, 474, 1477, 1556, 1628
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	1362
XspI	CTAG	3 cut(s)	1059, 1089, 1130
Zsp2I	ATGCAT	1 cut(s)	1435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.