Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038402.1

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Forward (+)

1649 .. 2017

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038402.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgggaagtttgaagctgtttggtgaaaataataagcagcaaagcaagtatagagttgcaactgtaaggttcaacaagtctggaaacttgctggcttgtcaagaggcaggaaagacagtagaaatatccaatgtgtttaatgaggctgaatcaaagcataaagcaaagcgcaggcttcgccggaagaaagagaagaaaaatgcaaaaggggagcctgaggtgatggaagatggagacacaaatcatgaagctggagaagaaggaaataatcatgtggttactgtctctgatgtctttgaacatctccaaactattcgagctgccaaaaagatatgttccatctctttctctccaaatccgctacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

122

Amino Acids

13.69

Weight (kDa)

9.45

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	13, 73, 299
AluBI	AGCT	3 cut(s)	16, 251, 320
AluI	AGCT	3 cut(s)	16, 251, 320
Alw26I	GTCTC	2 cut(s)	228, 289
ApeKI	GCWGC	2 cut(s)	37, 320
AspLEI	GCGC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	35, 232
AxyI	CCTNAGG	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	49, 307
BccI	CCATC	3 cut(s)	217, 224, 347
BcoDI	GTCTC	2 cut(s)	228, 289
BisI	GCNGC	2 cut(s)	38, 321
BlsI	GCNGC	2 cut(s)	39, 322
BmiI	GGNNCC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	273
Bse21I	CCTNAGG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	49, 307
BsiSI	CCGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	228, 289
BspACI	CCGC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	64, 118, 283
BstC8I	GCNNGC	2 cut(s)	93, 173
BstDEI	CTNAG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	171
BstMAI	GTCTC	2 cut(s)	228, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	49, 307
Bsu36I	CCTNAGG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	93, 173
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	171
CviAII	CATG	2 cut(s)	245, 272
CviJI	RGCY	7 cut(s)	16, 95, 146, 175, 214, 251, 320
CviKI_1	RGCY	7 cut(s)	16, 95, 146, 175, 214, 251, 320
DdeI	CTNAG	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	248, 275
FaiI	YATR	5 cut(s)	51, 159, 246, 273, 334
FatI	CATG	2 cut(s)	244, 271
Fnu4HI	GCNGC	2 cut(s)	38, 321
Fsp4HI	GCNGC	2 cut(s)	38, 321
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	38, 321
GsuI	CTGGAG	1 cut(s)	273
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	248, 275
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	35, 232
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	81, 101, 245
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	3 cut(s)	64, 118, 283
HpyCH4V	TGCA	2 cut(s)	59, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	248, 275
HspAI	GCGC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	7 cut(s)	66, 77, 93, 157, 194, 228, 237
Lsp1109I	GCAGC	2 cut(s)	49, 307
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	196, 205, 239, 269
MnlI	CCTC	3 cut(s)	97, 136, 211
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	248, 275
NlaIV	GGNNCC	1 cut(s)	213
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	39, 322
PspN4I	GGNNCC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	38, 321
SetI	ASST	5 cut(s)	18, 71, 222, 253, 322
SsiI	CCGC	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	64, 118, 283
TaqI	TCGA	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	2 cut(s)	37, 320
TspDTI	ATGAA	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.