Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

87177828 .. 87185943

Gene Structure 8116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG654700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTGGTTACTGTCTCTGATGTCTTTGAACATCTCCAAACTATTCGAGCTGTCAAAAAGATATGTTCCATCTCTCTCTCCAAATCCCCCAAAGAATTTGCAAGCTACATTAGCTCTGTCGCTGAACAATAATTTGTTGGAGTTTTATTCTGTTGAAGTGATACTGAAGTCAAGCTTTGGAATCCTAGTACCGGGTGGAAATATGGAGATTATTGACACCGGGAATGCCACTGTCACTGAAGTAGTGGAAGCTAATGGTGGTTCTGTTCAATCTATTGTAAGACTTCCCAATGAAAATGGTTTGTCACAGGAAGTTTGGATGGTTATGTTTAGTTCTGGGAATATGAAGTCAAACAAAACTCTCCCCAAGTATACCATATGGACAAGCTCAATCCTTTCCTTACCTTATTTGGTCATAAGCTGCCTGTGCTATGTATGGATGATCAGTGTTAAGCAAGTTAAATTTGTGTCAAATACCCATTACGTGGTTAATGTTGGTAAATATAAGCAAGTGAACTACTGGGATGCTGATAAATTTGAGTTACTTTTAACTATTGAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTAGCAACCTTGGTGATTTTTTTGTCACGGGATCTGTTGATCGATCCATACGTCGCTGGGATTGTGCTGACCAGCCATTTTTCTTGGAGGAAGAGAATCAGAAAAGGTTGTTAGAACGTTATGAGTCTGAGCTCAAGCATGCAGCAGAAGAAGAAATTCCTGAGAAGGGAGCTGTGGCCTTAGTGGGAAAGGAAAAATCAATTGATCTGACAGATGAACTTATTAATGCACTAGATGTAGCTGCCGAATATGAGGGAAAAAAGTCCAGATCTGATCATGTTCTGTATGCACTTTCAAAGATTAAGAGTGATCTGGAGTTGGTGCTACTGTGCTTACCGTTCACAGATGCTTCGAGGCTTTTGCTTACTTGGAGGACCTTGCTTCATATCCTGACCAGGAAAGAAAAGATATTATTGGTTACAACCTCGCCGGGATCAGTCACATTAAGCAAATGTTGGATTCGAGATCAAATGTCAAACTCAAGTTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

360

Amino Acids

40.54

Weight (kDa)

5.79

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	149 - 222	2.6e-22	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	149 - 220	1.7e-09	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	149 - 219	4.8e-08	THOC3 beta-propeller domain
EIF3I	PF24805	149 - 220	4.5e-06	EIF3I
Beta-prop_WDR3_1st	PF25173	150 - 217	7.7e-08	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	150 - 224	3.6e-07	Prp19 WD40 domain
WD40	PF00400	180 - 217	3e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	371
AclI	AACGTT	1 cut(s)	706
AclWI	GGATC	3 cut(s)	627, 628, 1030
AcsI	RAATTY	4 cut(s)	94, 461, 533, 744
AcuI	CTGAAG	2 cut(s)	185, 258
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	190, 484, 755
AgsI	TTSAA	4 cut(s)	28, 155, 269, 885
AjnI	CCWGG	1 cut(s)	983
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	627, 628, 1030
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	3 cut(s)	420, 731, 830
ApoI	RAATTY	4 cut(s)	94, 461, 533, 744
AseI	ATTAAT	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	744
AspS9I	GGNCC	1 cut(s)	963
AsuC2I	CCSGG	3 cut(s)	192, 220, 1020
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	963
BaeI	ACNNNNGTAYC	2 cut(s)	152, 185
BanII	GRGCYC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	3 cut(s)	407, 743, 817
BccI	CCATC	2 cut(s)	76, 313
BcgI	CGANNNNNNTGC	2 cut(s)	931, 965
BciT130I	CCWGG	1 cut(s)	985
BclI	TGATCA	2 cut(s)	441, 862
BcnI	CCSGG	3 cut(s)	192, 220, 1020
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	3 cut(s)	185, 821, 1081
BglII	AGATCT	1 cut(s)	857
BisI	GCNGC	3 cut(s)	421, 732, 831
BlsI	GCNGC	3 cut(s)	422, 733, 832
Bme1390I	CCNGG	4 cut(s)	192, 220, 985, 1020
Bme18I	GGWCC	1 cut(s)	963
BmgT120I	GGNCC	1 cut(s)	963
BmrFI	CCNGG	4 cut(s)	192, 220, 985, 1020
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	2 cut(s)	514, 925
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	923
BpuEI	CTTGAG	2 cut(s)	707, 1054
BpuMI	CCSGG	3 cut(s)	192, 220, 1020
Bsa29I	ATCGAT	1 cut(s)	631
BsaAI	YACGTR	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 484, 755
Bse1I	ACTGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	985
BseCI	ATCGAT	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	3 cut(s)	324, 444, 529
BseLI	CCNNNNNNNGG	3 cut(s)	190, 484, 755
BseMII	CTCAG	2 cut(s)	708, 741
BseNI	ACTGG	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	407, 743, 817
BseYI	CCCAGC	1 cut(s)	645
BshFI	GGCC	1 cut(s)	767
BshVI	ATCGAT	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	3 cut(s)	191, 219, 1019
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	3 cut(s)	190, 484, 755
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	723
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	2 cut(s)	709, 742
BspDI	ATCGAT	1 cut(s)	631
BspPI	GGATC	3 cut(s)	627, 628, 1030
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	598
BssNAI	GTATAC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	598
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	985
Bst4CI	ACNGT	4 cut(s)	12, 232, 918, 927
Bst6I	CTCTTC	1 cut(s)	675
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	102, 729
BstDEI	CTNAG	3 cut(s)	717, 750, 769
BstF5I	GGATG	3 cut(s)	324, 444, 529
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 426
BstNI	CCWGG	1 cut(s)	985
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	4 cut(s)	190, 218, 983, 1018
BstV1I	GCAGC	3 cut(s)	407, 743, 817
BstX2I	RGATCY	2 cut(s)	620, 857
BstYI	RGATCY	2 cut(s)	620, 857
BstZ17I	GTATAC	1 cut(s)	372
Bsu15I	ATCGAT	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	767
BsuTUI	ATCGAT	1 cut(s)	631
BtsCI	GGATG	3 cut(s)	324, 444, 529
BtsIMutI	CAGTG	3 cut(s)	228, 234, 451
Cac8I	GCNNGC	2 cut(s)	102, 729
Cfr13I	GGNCC	1 cut(s)	963
ClaI	ATCGAT	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	3 cut(s)	566, 728, 866
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	3 cut(s)	717, 750, 769
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	963
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	2 cut(s)	185, 258
EcoICRI	GAGCTC	1 cut(s)	721
EcoO109I	RGGNCCY	1 cut(s)	963
EcoRII	CCWGG	1 cut(s)	983
EcoT14I	CCWWGG	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	3 cut(s)	569, 731, 869
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	3 cut(s)	565, 727, 865
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	2 cut(s)	441, 862
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	421, 732, 831
FokI	GGATG	3 cut(s)	331, 451, 536
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	3 cut(s)	421, 732, 831
FspBI	CTAG	3 cut(s)	185, 821, 1081
GluI	GCNGC	3 cut(s)	421, 732, 831
GsaI	CCCAGC	1 cut(s)	649
GsuI	CTGGAG	1 cut(s)	923
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	3 cut(s)	191, 219, 1019
Hin1II	CATG	3 cut(s)	569, 731, 869
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	4 cut(s)	180, 685, 713, 1048
HpaII	CCGG	3 cut(s)	191, 219, 1019
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	372, 514, 930
Hpy188I	TCNGA	5 cut(s)	18, 690, 718, 798, 862
Hpy188III	TCNNGA	5 cut(s)	749, 855, 902, 979, 1052
Hpy8I	GTNNAC	3 cut(s)	372, 514, 930
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	4 cut(s)	12, 232, 918, 927
HpyCH4IV	ACGT	3 cut(s)	483, 640, 706
HpyCH4V	TGCA	4 cut(s)	100, 731, 818, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 426
HpyF3I	CTNAG	3 cut(s)	717, 750, 769
HpySE526I	ACGT	3 cut(s)	483, 640, 706
Hsp92II	CATG	3 cut(s)	569, 731, 869
Ksp22I	TGATCA	2 cut(s)	441, 862
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	3 cut(s)	407, 743, 817
LweI	GCATC	2 cut(s)	514, 925
MaeI	CTAG	3 cut(s)	185, 821, 1081
MaeII	ACGT	3 cut(s)	483, 640, 706
MaeIII	GTNAC	7 cut(s)	6, 232, 303, 540, 613, 1006, 1027
MboII	GAAGA	3 cut(s)	692, 749, 752
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	2 cut(s)	620, 857
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	6 cut(s)	94, 130, 461, 533, 744, 789
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	2 cut(s)	117, 1025
MnlI	CCTC	8 cut(s)	550, 562, 593, 670, 835, 936, 954, 1024
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	7 cut(s)	450, 459, 489, 548, 813, 891, 1034
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	3 cut(s)	191, 219, 1019
MspR9I	CCNGG	4 cut(s)	192, 220, 985, 1020
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	985
MwoI	GCNNNNNNNGC	2 cut(s)	110, 426
NciI	CCSGG	3 cut(s)	192, 220, 1020
NdeI	CATATG	1 cut(s)	377
NlaIII	CATG	3 cut(s)	569, 731, 869
NmuCI	GTSAC	4 cut(s)	232, 303, 613, 1027
NspI	RCATGY	1 cut(s)	731
PaeI	GCATGC	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	180, 685, 1048
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	422, 733, 832
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
Ppu21I	YACGTR	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	963
PshBI	ATTAAT	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	723
Psp1406I	AACGTT	1 cut(s)	706
Psp5II	RGGWCCY	1 cut(s)	963
Psp6I	CCWGG	1 cut(s)	983
PspFI	CCCAGC	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	983
PspPI	GGNCC	1 cut(s)	963
PspPPI	RGGWCCY	1 cut(s)	963
PsuI	RGATCY	2 cut(s)	620, 857
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	7 cut(s)	450, 459, 489, 548, 813, 891, 1034
SatI	GCNGC	3 cut(s)	421, 732, 831
Sau96I	GGNCC	1 cut(s)	963
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	4 cut(s)	192, 220, 985, 1020
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	2 cut(s)	514, 925
SinI	GGWCC	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	722, 1069
SmoI	CTYRAG	2 cut(s)	722, 1069
SphI	GCATGC	1 cut(s)	731
Sse9I	AATT	6 cut(s)	94, 130, 461, 533, 744, 789
SspMI	CTAG	3 cut(s)	185, 821, 1081
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	4 cut(s)	190, 218, 983, 1018
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	4 cut(s)	12, 232, 918, 927
TaiI	ACGT	3 cut(s)	486, 643, 709
TaqI	TCGA	4 cut(s)	45, 631, 941, 1051
TasI	AATT	6 cut(s)	94, 130, 461, 533, 744, 789
TfiI	GAWTC	3 cut(s)	180, 685, 1048
Tru1I	TTAA	7 cut(s)	450, 459, 489, 548, 813, 891, 1034
Tru9I	TTAA	7 cut(s)	450, 459, 489, 548, 813, 891, 1034
TscAI	CASTG	3 cut(s)	235, 241, 451
TseFI	GTSAC	4 cut(s)	232, 303, 613, 1027
TseI	GCWGC	3 cut(s)	420, 731, 830
Tsp45I	GTSAC	4 cut(s)	232, 303, 613, 1027
TspDTI	ATGAA	4 cut(s)	306, 359, 819, 962
TspRI	CASTG	3 cut(s)	235, 241, 451
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	963
VspI	ATTAAT	1 cut(s)	813
XapI	RAATTY	4 cut(s)	94, 461, 533, 744
XceI	RCATGY	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	3 cut(s)	185, 821, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.