Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

87867051 .. 87869939

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG665800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATGGATGAATTGAAGGCGGCACATGTTCTTATGGGTATTGGTGCTCCGGAGGCGGTGGCGGACGGTGTTCCTTCAGCGGCGGCGGTGGAGGAAAGCAGATGTGGTGGTGGTGATGAAGGGTCACGCCCAAGTTCTAAGGCTGATGAAATTAATATCCCCCCTTGGACACTAATAATCCCGAAGTTGGAAGATCACACTAATCTTCTACAGCTCCCTGACGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACCTTGATTCAGTGAGTGCATCTACAGCGGTCATGTTAGTGCCAGTGCTCGGTGGTACTATGAGGCTTTTGAAAAAAAAGTTACAAAAGGAGGTTGCTGGATATGATGAGGACGACGACGATGACAACGAGGAAAAGGATGTTGGCAATCAACATGAAATGAATCAGGAGGAGGGTGAGCAAAGAAAGGAGAATAAACATAAGGAGGATGTCATTGTTTTAAGTGATGACGATGAAGATGACGAGGAGGAGAAGGCTGGGAAGGTCTATTCAAAGCCGCTGTTGATGAAAATGAAGGTTGATGACCTTAGACATTTAGCTGTTAAGCTGCGATTGAAAAATAGCTCCTGGGATTCAAAGGAGAAGCTGGTTGATCGTATTGCAAAGGCACTAGGTGTTTGTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.19

Weight (kDa)

4.63

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	8 cut(s)	20, 56, 62, 80, 83, 86, 281, 530
AcuI	CTGAAG	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	187, 302
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	5 cut(s)	16, 325, 525, 589, 609
AjnI	CCWGG	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	6 cut(s)	214, 251, 572, 580, 597, 619
AluI	AGCT	6 cut(s)	214, 251, 572, 580, 597, 619
Alw21I	GWGCWC	2 cut(s)	49, 303
Aor13HI	TCCGGA	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	580
AseI	ATTAAT	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	125, 440
Bbv12I	GWGCWC	2 cut(s)	49, 303
BbvI	GCAGC	1 cut(s)	567
BciT130I	CCWGG	1 cut(s)	601
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	2 cut(s)	209, 276
BisI	GCNGC	5 cut(s)	21, 81, 84, 530, 581
BlsI	GCNGC	5 cut(s)	22, 82, 85, 531, 582
Bme1390I	CCNGG	1 cut(s)	601
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	164, 600
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 302
Bse1I	ACTGG	1 cut(s)	296
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	601
BseDI	CCNNGG	2 cut(s)	164, 600
BseGI	GGATG	3 cut(s)	13, 397, 466
BseLI	CCNNNNNNNGG	2 cut(s)	187, 302
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	3 cut(s)	437, 512, 515
BseXI	GCAGC	1 cut(s)	567
BseYI	CCCAGC	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	49, 303
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	187, 302
Bsp1286I	GDGCHC	2 cut(s)	49, 303
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	193, 223, 625
BspACI	CCGC	8 cut(s)	20, 56, 62, 80, 83, 86, 281, 530
BspEI	TCCGGA	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	164, 600
BssMI	GATC	3 cut(s)	193, 223, 625
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	601
Bst4CI	ACNGT	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	138, 560
BstF5I	GGATG	3 cut(s)	13, 397, 466
BstKTI	GATC	3 cut(s)	196, 226, 628
BstMBI	GATC	3 cut(s)	193, 223, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 278
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	2 cut(s)	209, 276
BstV1I	GCAGC	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	13, 397, 466
BtsIMutI	CAGTG	2 cut(s)	270, 303
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	26, 286, 407
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	138, 560
DpnI	GATC	3 cut(s)	195, 225, 627
DpnII	GATC	3 cut(s)	193, 223, 625
DraIII	CACNNNGTG	1 cut(s)	647
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	29, 289, 410
FaiI	YATR	7 cut(s)	27, 35, 287, 314, 357, 408, 453
FatI	CATG	3 cut(s)	25, 285, 406
Fnu4HI	GCNGC	5 cut(s)	21, 81, 84, 530, 581
FokI	GGATG	3 cut(s)	20, 404, 473
Fsp4HI	GCNGC	5 cut(s)	21, 81, 84, 530, 581
FspBI	CTAG	1 cut(s)	644
GluI	GCNGC	5 cut(s)	21, 81, 84, 530, 581
GsaI	CCCAGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	29, 289, 410
HinfI	GANTC	3 cut(s)	260, 415, 605
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	125, 440
Hpy188III	TCNNGA	3 cut(s)	50, 181, 419
Hpy99I	CGWCG	2 cut(s)	371, 374
HpyAV	CCTTC	6 cut(s)	10, 84, 113, 499, 508, 541
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	272, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 278
HpyF3I	CTNAG	2 cut(s)	138, 560
Hsp92II	CATG	3 cut(s)	29, 289, 410
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	193, 223, 625
LmnI	GCTCC	3 cut(s)	52, 219, 602
Lsp1109I	GCAGC	1 cut(s)	567
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	644
MaeIII	GTNAC	2 cut(s)	123, 333
MalI	GATC	3 cut(s)	195, 225, 627
MboI	GATC	3 cut(s)	193, 223, 625
MboII	GAAGA	3 cut(s)	197, 203, 500
MhlI	GDGCHC	2 cut(s)	49, 303
MluCI	AATT	2 cut(s)	11, 150
MmeI	TCCRAC	1 cut(s)	168
MroI	TCCGGA	1 cut(s)	49
MseI	TTAA	3 cut(s)	153, 473, 576
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	4 cut(s)	80, 251, 281, 532
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	2 cut(s)	53, 278
NdeII	GATC	3 cut(s)	193, 223, 625
NlaIII	CATG	3 cut(s)	29, 289, 410
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	29
PciI	ACATGT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	260, 415, 605
PkrI	GCNGC	5 cut(s)	22, 82, 85, 531, 582
PscI	ACATGT	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	153, 473, 576
SatI	GCNGC	5 cut(s)	21, 81, 84, 530, 581
Sau3AI	GATC	3 cut(s)	193, 223, 625
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	49, 303
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	2 cut(s)	209, 276
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	11, 150
SsiI	CCGC	8 cut(s)	20, 56, 62, 80, 83, 86, 281, 530
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	241
TasI	AATT	2 cut(s)	11, 150
TauI	GCSGC	4 cut(s)	23, 83, 86, 532
TfiI	GAWTC	3 cut(s)	260, 415, 605
Tru1I	TTAA	3 cut(s)	153, 473, 576
Tru9I	TTAA	3 cut(s)	153, 473, 576
TscAI	CASTG	2 cut(s)	270, 303
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	580
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	8 cut(s)	24, 132, 162, 423, 428, 501, 554, 560
TspRI	CASTG	2 cut(s)	270, 303
VspI	ATTAAT	1 cut(s)	153
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.