Rh2AG654600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007547
Physical Location & Seq
Reverse (-)
87174242 .. 87177130
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG654600.1

Sequence Viewer

Length: 660 bp
ATGGTGAAGACCAAAGTCTCTGAAATCCCGAAGATTACTTACCAGGCGGATATGATGGATGAATTGAAGGCGGCACATGTTCTTATGGGTATTGGTGCTCCGGAGGCGGTGGCGGACGGTGTTCCTTCAGCGGCGGCGGTGGAGGAAAGCAGATGTGGTGGTGGTGATGAAGGGTCACGCCCAAGTTCTAAGGCTGATGAAATTAATATCCCCCCTTGGACACTAATAATCCCGAAGTTGGAAGATCACACTAATCTTCTACAGCTCCCTGACGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACCTTGATTCAGTGAGTGCATCTACAGCGGTCATGTTAGTGCCAGTGCTCGGTGGTACTATGAGGCTTTTGAAAAAAAAGTTACAAAAGGAGGTTGCTGGATATGATGAGGACGACGACGATGACAACGAGGAAAAGGATGTTGGCAATCAACATGAAATGAATCAGGAGGAGGGTGAGCAAAGAAAGGAGAATAAACATAAGGAGGATGTCATTGTTTTAAGTGATGACGATGAAGATGACGAGGAGGAGAAGGCTGTAAGTCATGTTGGGTTGCCAACTTTTTTTTCTGCTGTCTTTGGTCTACATTACCTATGGATCTGTGGTCTTGTTCCTTCCTTTGAGCTGTGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.03

Weight (kDa)

4.37

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 607
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 8 cut(s) 47, 71, 107, 113, 131, 134, 137, 332
AclWI GGATC 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 238, 353
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 67, 376
AjnI CCWGG 1 cut(s) 42
AjuI GAANNNNNNNTTGG 4 cut(s) 429, 461, 574, 606
AluBI AGCT 3 cut(s) 265, 302, 649
AluI AGCT 3 cut(s) 265, 302, 649
Alw21I GWGCWC 2 cut(s) 100, 354
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 100
AseI ATTAAT 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 16, 176, 491
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 100, 354
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 2 cut(s) 260, 327
BisI GCNGC 3 cut(s) 72, 132, 135
BlsI GCNGC 3 cut(s) 73, 133, 136
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 332
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 353
Bse1I ACTGG 1 cut(s) 347
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 64, 448, 517
BseLI CCNNNNNNNGG 2 cut(s) 238, 353
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 3 cut(s) 488, 563, 566
BsiHKAI GWGCWC 2 cut(s) 100, 354
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 238, 353
BsmAI GTCTC 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 100, 354
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 3 cut(s) 244, 274, 621
BspACI CCGC 8 cut(s) 47, 71, 107, 113, 131, 134, 137, 332
BspEI TCCGGA 1 cut(s) 100
BspPI GGATC 1 cut(s) 629
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 3 cut(s) 244, 274, 621
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 64, 448, 517
BstKTI GATC 3 cut(s) 247, 277, 624
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 3 cut(s) 244, 274, 621
BstMWI GCNNNNNNNGC 2 cut(s) 104, 329
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 80
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 2 cut(s) 260, 327
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BtsCI GGATG 3 cut(s) 64, 448, 517
BtsIMutI CAGTG 2 cut(s) 321, 354
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 77, 337, 458, 569
CviJI RGCY 6 cut(s) 194, 265, 302, 370, 560, 649
CviKI_1 RGCY 6 cut(s) 194, 265, 302, 370, 560, 649
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 246, 276, 623
DpnII GATC 3 cut(s) 244, 274, 621
EciI GGCGGA 2 cut(s) 62, 128
Eco130I CCWWGG 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 4 cut(s) 80, 340, 461, 572
FatI CATG 4 cut(s) 76, 336, 457, 568
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 72, 132, 135
FokI GGATG 3 cut(s) 71, 455, 524
Fsp4HI GCNGC 3 cut(s) 72, 132, 135
GluI GCNGC 3 cut(s) 72, 132, 135
HapII CCGG 1 cut(s) 101
Hin1II CATG 4 cut(s) 80, 340, 461, 572
HinfI GANTC 2 cut(s) 311, 466
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 16, 176, 491
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 4 cut(s) 28, 101, 232, 470
Hpy8I GTNNAC 1 cut(s) 608
Hpy99I CGWCG 2 cut(s) 422, 425
HpyAV CCTTC 5 cut(s) 61, 135, 164, 550, 648
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 329
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 4 cut(s) 80, 340, 461, 572
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 244, 274, 621
LmnI GCTCC 2 cut(s) 103, 270
LpnPI CCDG 9 cut(s) 29, 56, 114, 263, 282, 312, 360, 387, 455
LweI GCATC 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 174, 384
MalI GATC 3 cut(s) 246, 276, 623
MboI GATC 3 cut(s) 244, 274, 621
MboII GAAGA 5 cut(s) 19, 43, 248, 254, 551
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 100, 354
MluCI AATT 2 cut(s) 62, 201
MmeI TCCRAC 1 cut(s) 219
MroI TCCGGA 1 cut(s) 100
MseI TTAA 2 cut(s) 204, 524
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 3 cut(s) 131, 302, 332
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 104, 329
NdeII GATC 3 cut(s) 244, 274, 621
NlaIII CATG 4 cut(s) 80, 340, 461, 572
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 2 cut(s) 311, 466
PkrI GCNGC 3 cut(s) 73, 133, 136
PscI ACATGT 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 204, 524
SatI GCNGC 3 cut(s) 72, 132, 135
Sau3AI GATC 3 cut(s) 244, 274, 621
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 100, 354
SetI ASST 7 cut(s) 267, 282, 304, 309, 399, 618, 651
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 2 cut(s) 260, 327
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 62, 201
SsiI CCGC 8 cut(s) 47, 71, 107, 113, 131, 134, 137, 332
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 292
TasI AATT 2 cut(s) 62, 201
TauI GCSGC 3 cut(s) 74, 134, 137
TfiI GAWTC 2 cut(s) 311, 466
Tru1I TTAA 2 cut(s) 204, 524
Tru9I TTAA 2 cut(s) 204, 524
TscAI CASTG 2 cut(s) 321, 354
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 6 cut(s) 75, 183, 213, 474, 479, 552
TspRI CASTG 2 cut(s) 321, 354
VspI ATTAAT 1 cut(s) 204
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.