Rorug02G0575000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007547
Physical Location & Seq
Reverse (-)
70016121 .. 70016891
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0575000.1

Sequence Viewer

Length: 771 bp
ATGATCCCATCACAATCCACCATTACACGCCGGGCCTCCTACAGCAGATGCAGACTGTCCTTCTTCAAGAAAGTTGTCGCCTCATCACCACCAACAAGGCTGCCGATGAAGCAGGAATGTATTGTGGCTGGTCTTAGTTATGGAGGTCTTTTGGCTTTTTGTAGGCCAACTGATTCATCATGGACCTTCATTGAGACCAAAGACTTGCTCAAGTTTAAAGATATAGAAATCCTTGATGGGAAATTATATGCTGTAACGACTGTGGAGCAAGCCTCGGCGTTTCTAATGGTATATGACATCCTCCCTGCGCATGCCAATGGTTATAGGGTGCATTCCAAGGACTCATTCCGTTGTTATTGCGGACGGGGAGGTCCTTTTCTAGTGAAAGATTCGGCAGCCAATGAATTGTTTATGATTTTACAAAAGATTTCATTTAGACATCAAAGTAAGAATGAAAAATTATTCCAAGTGTTCAAGCTGGATTACTGTAAGACTAATGGTGGACCACCATGGGAGGAGGTTGTTGACCTTGGTGATCGAATGTTGTTTCTGAGCGACGCAAGTAGTTTGTTCATCGAGGACAAGACACTTGGAAAAAACTGCATCTTTTTTGCTATCAATGATGAAGGTGCTGGTTGTGATGATGGTGCTTTTGGGGTGCATTCCTTGACAGATAGGAACATCAAACTGCTTGCTTTGCCTCAGGATACATCATCTACCATAATCAATGTTTTCAGTCGAACTCTTTGGTTCACACCACTTCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.77

Weight (kDa)

8.37

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 17 - 214 1.3e-25 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 369
Acc16I TGCGCA 1 cut(s) 309
AciI CCGC 1 cut(s) 360
AgsI TTSAA 2 cut(s) 67, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 2 cut(s) 33, 164
ApeKI GCWGC 2 cut(s) 100, 395
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 4 cut(s) 33, 183, 371, 503
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 78, 545
AvaII GGWCC 3 cut(s) 183, 371, 503
AxyI CCTNAGG 1 cut(s) 702
BbvI GCAGC 2 cut(s) 87, 407
BccI CCATC 3 cut(s) 16, 230, 638
BciVI GTATCC 1 cut(s) 700
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 40
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 2 cut(s) 101, 396
BlsI GCNGC 2 cut(s) 102, 397
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 3 cut(s) 183, 371, 503
BmgT120I GGNCC 4 cut(s) 33, 183, 371, 503
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 38, 612
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 5 cut(s) 273, 336, 509, 529, 764
Bse21I CCTNAGG 1 cut(s) 702
BseDI CCNNGG 5 cut(s) 273, 336, 509, 529, 764
BseGI GGATG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 542, 716
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 2 cut(s) 87, 407
BshFI GGCC 2 cut(s) 35, 166
BsiSI CCGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 188
BsmI GAATGC 2 cut(s) 331, 661
BsnI GGCC 2 cut(s) 35, 166
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 3, 535
Bsp19I CCATGG 2 cut(s) 509, 764
BspACI CCGC 1 cut(s) 360
BspANI GGCC 2 cut(s) 35, 166
BspCNI CTCAG 2 cut(s) 543, 715
BspTNI GGTCTC 1 cut(s) 188
BssECI CCNNGG 5 cut(s) 273, 336, 509, 529, 764
BssMI GATC 2 cut(s) 3, 535
BssT1I CCWWGG 4 cut(s) 336, 509, 529, 764
Bst4CI ACNGT 3 cut(s) 57, 262, 488
BstC8I GCNNGC 3 cut(s) 270, 312, 693
BstDEI CTNAG 3 cut(s) 134, 551, 702
BstDSI CCRYGG 2 cut(s) 509, 764
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 2 cut(s) 6, 538
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 3, 535
BstMWI GCNNNNNNNGC 2 cut(s) 109, 697
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 87, 407
BstXI CCANNNNNNTGG 1 cut(s) 765
Bsu36I CCTNAGG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 35, 166
BtgI CCRYGG 2 cut(s) 509, 764
BtsCI GGATG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 270, 312, 693
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 4 cut(s) 33, 183, 371, 503
CseI GACGC 1 cut(s) 566
CviAII CATG 4 cut(s) 180, 311, 510, 765
CviJI RGCY 8 cut(s) 35, 100, 128, 155, 166, 272, 398, 478
CviKI_1 RGCY 8 cut(s) 35, 100, 128, 155, 166, 272, 398, 478
DdeI CTNAG 3 cut(s) 134, 551, 702
DpnI GATC 2 cut(s) 5, 537
DpnII GATC 2 cut(s) 3, 535
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 369
DseDI GACNNNNNNGTC 1 cut(s) 369
Eco130I CCWWGG 4 cut(s) 336, 509, 529, 764
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 183, 371, 503
Eco81I CCTNAGG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 371
EcoT14I CCWWGG 4 cut(s) 336, 509, 529, 764
ErhI CCWWGG 4 cut(s) 336, 509, 529, 764
FaeI CATG 4 cut(s) 183, 314, 513, 768
FatI CATG 4 cut(s) 179, 310, 509, 764
Fnu4HI GCNGC 2 cut(s) 101, 396
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 101, 396
FspBI CTAG 1 cut(s) 380
FspI TGCGCA 1 cut(s) 309
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 101, 396
HaeIII GGCC 2 cut(s) 35, 166
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 566
HhaI GCGC 1 cut(s) 310
Hin1II CATG 4 cut(s) 183, 314, 513, 768
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 3 cut(s) 173, 341, 389
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 78, 545
Hpy166II GTNNAC 3 cut(s) 503, 526, 753
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 2 cut(s) 67, 704
Hpy8I GTNNAC 3 cut(s) 503, 526, 753
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 3 cut(s) 70, 196, 620
HpyCH4III ACNGT 3 cut(s) 57, 262, 488
HpyCH4V TGCA 4 cut(s) 51, 331, 603, 661
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 697
HpyF3I CTNAG 3 cut(s) 134, 551, 702
Hsp92II CATG 4 cut(s) 183, 314, 513, 768
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 2 cut(s) 3, 535
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 44, 98, 114, 318, 464, 618, 689
Lsp1109I GCAGC 2 cut(s) 87, 407
LweI GCATC 2 cut(s) 38, 612
MaeI CTAG 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 5, 537
MboI GATC 2 cut(s) 3, 535
MboII GAAGA 1 cut(s) 55
MluCI AATT 3 cut(s) 242, 404, 458
MlyI GAGTC 1 cut(s) 335
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 315, 763
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
Mva1269I GAATGC 2 cut(s) 331, 661
MwoI GCNNNNNNNGC 2 cut(s) 109, 697
NciI CCSGG 1 cut(s) 32
NcoI CCATGG 2 cut(s) 509, 764
NdeII GATC 2 cut(s) 3, 535
NlaIII CATG 4 cut(s) 183, 314, 513, 768
NmeAIII GCCGAG 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 309
NspI RCATGY 1 cut(s) 314
PaeI GCATGC 1 cut(s) 314
PctI GAATGC 2 cut(s) 331, 661
PfeI GAWTC 2 cut(s) 173, 389
PkrI GCNGC 2 cut(s) 102, 397
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
PspPI GGNCC 4 cut(s) 33, 183, 371, 503
PspPPI RGGWCCY 1 cut(s) 371
RseI CAYNNNNRTG 2 cut(s) 315, 763
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 101, 396
Sau3AI GATC 2 cut(s) 3, 535
Sau96I GGNCC 4 cut(s) 33, 183, 371, 503
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 32
SetI ASST 7 cut(s) 148, 188, 373, 480, 522, 531, 631
SfaNI GCATC 2 cut(s) 38, 612
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 3 cut(s) 183, 371, 503
SmiMI CAYNNNNRTG 2 cut(s) 315, 763
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 314
Sse9I AATT 3 cut(s) 242, 404, 458
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 4 cut(s) 336, 509, 529, 764
TaaI ACNGT 3 cut(s) 57, 262, 488
TaqI TCGA 3 cut(s) 538, 576, 739
TasI AATT 3 cut(s) 242, 404, 458
TfiI GAWTC 2 cut(s) 173, 389
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 2 cut(s) 100, 395
TspDTI ATGAA 8 cut(s) 122, 165, 178, 417, 420, 468, 562, 639
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 3 cut(s) 183, 371, 503
XceI RCATGY 1 cut(s) 314
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.