Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

49590170 .. 49592989

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG432400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTTAGTGCTGGAAAGGACCGCATTGTAAAATATTGGGATGCTGATAAATTTCAGTTGCTTTTAACGCTTGAGGGACACCATGCTGAAGTTTGGTGCCTCGGAATTAGTAACCGTGGGGACTTCCTTGTCACGGGATCTCATGACAGATCAATACGTCGCTGGGATCGCTCTGAAGAGCCATTTTTTATTGCGGAAGAAGAAGAAAAAAGGCAGTTGGAAATGATTGAGTCTGAACTTGACAATATGATAGAGAGCAGGTATCAAAAGGAAGAAATCCCTGAGGTGGGAGCTGTGGCCTTAGCAGGGAAGAAATCTAAAGAAACAATTACAGCTGCTGATGCAATTATCGATGCAATAGATATGGCAGACGCAGAATTGAAGCGACTTGCGGAACATGAGGTATACTTGTATTTTTGGAGAAGCCAGGCCAAAGACCTTAGCTCAGTGATCAAGCATGGACATGTTGGTGATGAAGCAGTGACACCCTTACCATTGATGTTGTCACTATCAGTTTTCCTATTTGTTGTATCAATACAATTCATGTTTCTTTATTGTGCAATTTTAGTCTCTTGTTGGCCTCAAAATGGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

198

Amino Acids

22.69

Weight (kDa)

4.93

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	1 - 61	2e-24	WDR3 second beta-propeller domain
EIF3I	PF24805	1 - 77	2.2e-07	EIF3I
Beta-prop_WDR3_1st	PF25173	2 - 56	2.3e-11	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	2 - 59	5.3e-10	WDR5 beta-propeller domain
WD40_Prp19	PF24814	2 - 64	2.4e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	3 - 56	1.6e-08	THOC3 beta-propeller domain
WD40	PF00400	19 - 56	2.7e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	3 cut(s)	22, 194, 392
AclWI	GGATC	2 cut(s)	145, 174
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	108, 195
AfiI	CCNNNNNNNGG	5 cut(s)	133, 286, 287, 306, 587
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	3 cut(s)	293, 335, 444
AluI	AGCT	3 cut(s)	293, 335, 444
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	2 cut(s)	145, 174
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	297, 429, 578
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	3 cut(s)	31, 331, 343
Bpu10I	CCTNAGC	2 cut(s)	301, 440
BpuEI	CTTGAG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	100, 115
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 286, 287, 306, 587
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	100, 115
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	5 cut(s)	133, 286, 287, 306, 587
BseMII	CTCAG	2 cut(s)	273, 459
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	3 cut(s)	299, 431, 580
BshNI	GGYRCC	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	90, 134
BslI	CCNNNNNNNGG	5 cut(s)	133, 286, 287, 306, 587
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	2 cut(s)	90, 134
BsnI	GGCC	3 cut(s)	299, 431, 580
Bsp143I	GATC	4 cut(s)	137, 149, 166, 450
BspACI	CCGC	3 cut(s)	22, 194, 392
BspANI	GGCC	3 cut(s)	299, 431, 580
BspCNI	CTCAG	2 cut(s)	274, 458
BspDI	ATCGAT	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	145, 174
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	100, 115
BssMI	GATC	4 cut(s)	137, 149, 166, 450
BssNAI	GTATAC	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	282, 301, 440, 445
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	4 cut(s)	140, 152, 169, 453
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	4 cut(s)	137, 149, 166, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 168, 341
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BstZ17I	GTATAC	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	351
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	299, 431, 580
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	453, 486
BveI	ACCTGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	380
CviAII	CATG	6 cut(s)	83, 143, 398, 458, 464, 544
CviJI	RGCY	9 cut(s)	181, 293, 299, 335, 426, 431, 444, 580, 591
CviKI_1	RGCY	9 cut(s)	181, 293, 299, 335, 426, 431, 444, 580, 591
DdeI	CTNAG	4 cut(s)	282, 301, 440, 445
DpnI	GATC	4 cut(s)	139, 151, 168, 452
DpnII	GATC	4 cut(s)	137, 149, 166, 450
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	108, 195
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	426
FaeI	CATG	6 cut(s)	86, 146, 401, 461, 467, 547
FaiI	YATR	9 cut(s)	84, 144, 248, 365, 399, 406, 459, 465, 545
FaqI	GGGAC	2 cut(s)	90, 134
FatI	CATG	6 cut(s)	82, 142, 397, 457, 463, 543
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	299, 431, 580
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	6 cut(s)	86, 146, 401, 461, 467, 547
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	3 cut(s)	104, 175, 235
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	344, 356, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 168, 341
HpyF3I	CTNAG	4 cut(s)	282, 301, 440, 445
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	6 cut(s)	86, 146, 401, 461, 467, 547
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	137, 149, 166, 450
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	6 cut(s)	148, 244, 291, 294, 413, 440
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	3 cut(s)	31, 331, 343
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	4 cut(s)	110, 130, 481, 504
MalI	GATC	4 cut(s)	139, 151, 168, 452
MboI	GATC	4 cut(s)	137, 149, 166, 450
MboII	GAAGA	6 cut(s)	188, 209, 212, 215, 284, 322
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	7 cut(s)	50, 105, 327, 345, 377, 539, 561
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	67, 110, 277, 394, 591
MseI	TTAA	2 cut(s)	65, 595
MslI	CAYNNNNRTG	2 cut(s)	462, 468
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	67, 168, 341
NdeII	GATC	4 cut(s)	137, 149, 166, 450
NlaIII	CATG	6 cut(s)	86, 146, 401, 461, 467, 547
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	3 cut(s)	130, 481, 504
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	462, 468
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	65, 595
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	4 cut(s)	137, 149, 166, 450
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	428
SetI	ASST	8 cut(s)	160, 263, 288, 295, 337, 405, 441, 446
SfaNI	GCATC	3 cut(s)	31, 331, 343
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	462, 468
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	7 cut(s)	50, 105, 327, 345, 377, 539, 561
SsiI	CCGC	3 cut(s)	22, 194, 392
SspI	AATATT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	351
TasI	AATT	7 cut(s)	50, 105, 327, 345, 377, 539, 561
Tru1I	TTAA	2 cut(s)	65, 595
Tru9I	TTAA	2 cut(s)	65, 595
TscAI	CASTG	2 cut(s)	453, 486
TseFI	GTSAC	3 cut(s)	130, 481, 504
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	3 cut(s)	130, 481, 504
TspDTI	ATGAA	2 cut(s)	489, 532
TspRI	CASTG	2 cut(s)	453, 486
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.