Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

81439983 .. 81445110

Gene Structure 5128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGCAGATAGCCTGTGGGTATGGAGATGGTAGTATAAGAATTTGGGATTCTGACACTGAAACCTGCGACAACATTTTCAATGGGCATAATGGGGCTGTTACTGCCTTACGGTACAATGAGCGTGGGGATATAGTTGCATCTGGAGGCCAAGACAAGGACATTGTATTATGGGATGTGGAGATGGGCGAGGGCAGATATCGTCTCCGCGGGCACGCTGATCAGGTCACTGATCTTGTTTTCTTGGATTCTAGTAGCAAACTCGTTAGTTCCTCAAAAGTTAAATTGTTGAAAGTGTGGGATCTTGGAAACTTGAATCAAACCCCGGATCCAGATGAAAAGTATTTAGTCTCAGGGTCTGCAGACCGAGAACTAAGATTTTACACAATTAAGCATAACTTGGAAGGTGGCCAATCCATTTCTAATGGGAATGGAACTGAGATTGTGAGTTTTGAAGATAACAAATGGGAAGTTTTGAAGCTGTTTGGTGAATATAATAAGCGGCAAAGCAAGTATAGAGTTGCAACTGTAAGGTTCAACAAGTCTGGAAACTTGCTGGCTTGTCAAAAGGCAGGAAAGACAGTAGAAATATTCCATGAGTTGAATGAGGCTGAATCAAAGCGTAAAGCAAAGCGCAGGCTTCGCCGGAAGAAAGAGAAGAAAAATGCAAAATGGGAGCCTGAGGTGATGGAAGATGGAGACATAAATCATGAAGCTGGAGAAGAAGGAAATAATCATGTGGTTACTGTCTCTGATGTCTTTGAACATCTCCAAACTATTCGAGCTGCCAAAAAGATATGTTCCATCTCTTTCTCTCCAAATCCCCCAAAGAATTTGCGAGCTACATTAGCTCTGTCGCTGAACAATAATTTGTTGGAGTTTTATTCTGTTGAAGGTGTAAAGTTTGACAACAGCTTTGTGATGTCAACTAGTGATACTGAAGTCAAGCTTTGGAATCCTAGTACCGGTAACTGCCTTCATACTATTGACATTCCAAATCTAGTGAGTGGTTTTATCCTTCCCAATAAAAAATATGCACTTGTTGGATCTAAGAGTGGAAATATGGAGATTATTGACACCGGGAATGCCACTGTCACTGAAGTAGTGGAAGCACATGGTGGTTCTGTTCAATCTATTGTAAGACTTCCCAATGAAAATGGTTTTGAATATGAAGTCAAACAAAAGTCTCCCCAAGATTCTAAGCACCTAATGGTGACAAATGTAAGAACCATGAAAATAGATACTGACGTTCGTGTGGTTGCTGTTAGCCCCGATGCCAGATATATTTTGGTTGCCTTGGACTCCAGAGTAAAGGTATACTATATGGACAAGCTCAATCCTTTCCTGACCTTATTTGGTCATAAGCTGCCTGTGCTATGTATGGATGCATCATCTGATGGAGATCTGATAGTGACTGGATCTCAAGACAAAAATTTGAAGATTTGGGGTTTAGATTTTGGCGACTGCCACAAATCAATGTTCTTTCATAGGAGCAATAAGCAAGTGAACTACTGGGATGCTGATAAATCTGAGTTACTTTTAACTATTGAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTGGCAACCTTGGTGATTTTTTTGTCACGGGATCTGTTGATCGATCCATATGTCGCTGGGATCGTACTGACAAGCCTTTTTTTTTTTTGGATTTGAAATTTCAGGAAGAGAATCAGAAAAGGTTGTTAGAACGTTATGAGTCTGAGCTCAAGCATGCAGCGGAAGAAGAAATTCCTGAGAAGGGAGCTGTGGCCTTAGTGGGAAAGGAAAAAACAATTGATCTGACAGATGAACTTATTAATGCACTAGATGTAGCTGCCGAATATGAGGGAAAAAAGTCCAGATCTGGTCATGTTCTGTATGCACTTTCAAAGATTAAGAGTGATCTGGAGTTGGTGCTACTGTGCTTACCGTTCACAGATGCTTTGAGGCTTTTGCCTTACTTGGAGGACCTTGCTTCATATCCTGACCAGGTTGGCGTCTGTTCATTTTTTTCAATGGACTTTGGTCTGCGGTGGTTTCTTTTGCTCTATCTATTCTTTCGCACAGTTTTCTGTAGTGGCTTATGCCTCTTATACCCTCTTGTCCTTGTAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

706

Amino Acids

79.54

Weight (kDa)

5.81

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	2 - 129	4.2e-38	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	2 - 101	8.2e-08	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	2 - 110	8.2e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	3 - 101	7.1e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR5	PF25175	3 - 103	9.9e-21	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	3 - 106	7.8e-13	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	3 - 63	2.6e-09	THOC3 beta-propeller domain
Beta-prop_SCAP	PF24017	5 - 100	4.1e-11	SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	5 - 102	5.9e-07	WDR36/Utp21 first beta-propeller
Beta-prop_EML	PF23409	6 - 92	5.8e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	7 - 102	1.3e-06	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	7 - 202	9.6e-12	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	9 - 100	4.6e-10	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	21 - 103	5.7e-07	TEP-1 second beta-propeller
WD40	PF00400	22 - 58	2e-06	WD domain, G-beta repeat
EIF3I	PF24805	26 - 101	7e-08	EIF3I
Beta-prop_THOC3	PF25174	29 - 199	4.7e-16	THOC3 beta-propeller domain
WD40_Prp19	PF24814	41 - 103	3.6e-08	Prp19 WD40 domain
WD40_Gbeta	PF25391	295 - 481	1.6e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	301 - 497	3.1e-59	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	303 - 489	8.6e-15	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	410 - 498	2.3e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	413 - 485	1.4e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	415 - 496	6.3e-10	WDR5 beta-propeller domain
EIF3I	PF24805	430 - 505	4.3e-06	EIF3I
WD40	PF00400	447 - 481	9.7e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	486 - 549	4.6e-06	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	497 - 550	6.7e-06	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	498 - 552	8.7e-13	WDR3 second beta-propeller domain
WD40	PF00400	510 - 547	3.1e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	1314
AccII	CGCG	1 cut(s)	207
AciI	CCGC	5 cut(s)	205, 207, 499, 1739, 2032
AclI	AACGTT	1 cut(s)	1711
AclWI	GGATC	8 cut(s)	306, 320, 333, 1051, 1423, 1617, 1618, 1647
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	5 cut(s)	39, 829, 1429, 1676, 1749
AcuI	CTGAAG	2 cut(s)	957, 1116
AcyI	GRCGYC	1 cut(s)	1998
AdeI	CACNNNGTG	1 cut(s)	1115
AfaI	GTAC	3 cut(s)	113, 961, 1645
AfiI	CCNNNNNNNGG	3 cut(s)	154, 962, 1760
AgeI	ACCGGT	1 cut(s)	962
AhlI	ACTAGT	1 cut(s)	926
AjnI	CCWGG	1 cut(s)	1989
Alw21I	GWGCWC	1 cut(s)	1728
Alw26I	GTCTC	5 cut(s)	206, 352, 690, 751, 1188
AlwI	GGATC	8 cut(s)	306, 320, 333, 1051, 1423, 1617, 1618, 1647
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	145, 406, 1770
ApeKI	GCWGC	4 cut(s)	782, 1363, 1736, 1835
ApoI	RAATTY	5 cut(s)	39, 829, 1429, 1676, 1749
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AseI	ATTAAT	1 cut(s)	1818
AsiGI	ACCGGT	1 cut(s)	962
Asp700I	GAANNNNTTC	1 cut(s)	1749
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	1969
AsuC2I	CCSGG	2 cut(s)	323, 1078
AsuHPI	GGTGA	4 cut(s)	497, 694, 1222, 1604
AvaII	GGWCC	1 cut(s)	1969
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	213
BaeI	ACNNNNGTAYC	4 cut(s)	924, 957, 1230, 1263
BalI	TGGCCA	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	1728
Bbv12I	GWGCWC	1 cut(s)	1728
BbvI	GCAGC	4 cut(s)	769, 1350, 1748, 1822
BccI	CCATC	6 cut(s)	20, 175, 679, 686, 809, 1388
BciT130I	CCWGG	1 cut(s)	1991
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	2 cut(s)	323, 1078
BcoDI	GTCTC	5 cut(s)	206, 352, 690, 751, 1188
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	5 cut(s)	249, 927, 957, 998, 1826
BfmI	CTRYAG	2 cut(s)	357, 2074
BfuAI	ACCTGC	1 cut(s)	71
BglII	AGATCT	2 cut(s)	1399, 1862
BisI	GCNGC	5 cut(s)	500, 783, 1364, 1737, 1836
BlsI	GCNGC	5 cut(s)	501, 784, 1365, 1738, 1837
Bme1390I	CCNGG	3 cut(s)	323, 1078, 1991
Bme18I	GGWCC	1 cut(s)	1969
BmgT120I	GGNCC	1 cut(s)	1969
BmiI	GGNNCC	2 cut(s)	327, 675
BmrFI	CCNGG	3 cut(s)	323, 1078, 1991
BmrI	ACTGGG	1 cut(s)	1519
BmsI	GCATC	6 cut(s)	146, 1261, 1372, 1394, 1504, 1930
BmuI	ACTGGG	1 cut(s)	1519
BoxI	GACNNNNGTC	1 cut(s)	2025
BpmI	CTGGAG	4 cut(s)	162, 735, 1285, 1928
BpuEI	CTTGAG	2 cut(s)	1404, 1712
BpuMI	CCSGG	2 cut(s)	323, 1078
Bsa29I	ATCGAT	1 cut(s)	1621
BsaBI	GATNNNNATC	1 cut(s)	1398
BsaHI	GRCGYC	1 cut(s)	1998
BsaJI	CCNNGG	4 cut(s)	205, 321, 1293, 1588
BsaWI	WCCGGW	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 962, 1760
Bse118I	RCCGGY	1 cut(s)	962
Bse1I	ACTGG	2 cut(s)	1417, 1514
Bse21I	CCTNAGG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	1398
BseBI	CCWGG	1 cut(s)	1991
BseCI	ATCGAT	1 cut(s)	1621
BseDI	CCNNGG	4 cut(s)	205, 321, 1293, 1588
BseGI	GGATG	3 cut(s)	178, 1387, 1519
BseJI	GATNNNNATC	1 cut(s)	1398
BseLI	CCNNNNNNNGG	3 cut(s)	154, 962, 1760
BseMII	CTCAG	6 cut(s)	363, 426, 669, 1518, 1713, 1746
BseNI	ACTGG	2 cut(s)	1417, 1514
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	4 cut(s)	769, 1350, 1748, 1822
BseYI	CCCAGC	1 cut(s)	1635
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	147, 408, 1772
BshTI	ACCGGT	1 cut(s)	962
BshVI	ATCGAT	1 cut(s)	1621
BsiHKAI	GWGCWC	1 cut(s)	1728
BsiSI	CCGG	4 cut(s)	323, 643, 963, 1077
BslFI	GGGAC	1 cut(s)	1563
BslI	CCNNNNNNNGG	3 cut(s)	154, 962, 1760
BsmAI	GTCTC	5 cut(s)	206, 352, 690, 751, 1188
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	1563
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	3 cut(s)	147, 408, 1772
Bsp1286I	GDGCHC	2 cut(s)	213, 1728
BspACI	CCGC	5 cut(s)	205, 207, 499, 1739, 2032
BspANI	GGCC	3 cut(s)	147, 408, 1772
BspCNI	CTCAG	6 cut(s)	362, 427, 670, 1519, 1714, 1747
BspDI	ATCGAT	1 cut(s)	1621
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	327, 675
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	71
BspPI	GGATC	8 cut(s)	306, 320, 333, 1051, 1423, 1617, 1618, 1647
BsrFI	RCCGGY	1 cut(s)	962
BsrI	ACTGG	2 cut(s)	1417, 1514
BssAI	RCCGGY	1 cut(s)	962
BssECI	CCNNGG	4 cut(s)	205, 321, 1293, 1588
BssNAI	GTATAC	1 cut(s)	1315
BssNI	GRCGYC	1 cut(s)	1998
BssT1I	CCWWGG	2 cut(s)	1293, 1588
Bst1107I	GTATAC	1 cut(s)	1315
Bst2UI	CCWGG	1 cut(s)	1991
Bst4CI	ACNGT	8 cut(s)	111, 526, 580, 745, 1090, 1923, 1932, 2068
Bst6I	CTCTTC	1 cut(s)	1680
BstACI	GRCGYC	1 cut(s)	1998
BstC8I	GCNNGC	6 cut(s)	209, 213, 555, 635, 837, 1734
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	3 cut(s)	178, 1387, 1519
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	633
BstMAI	GTCTC	5 cut(s)	206, 352, 690, 751, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 639, 845, 1369
BstNI	CCWGG	1 cut(s)	1991
BstNSI	RCATGY	1 cut(s)	1736
BstPAI	GACNNNNGTC	1 cut(s)	2025
BstSCI	CCNGG	3 cut(s)	321, 1076, 1989
BstSFI	CTRYAG	2 cut(s)	357, 2074
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	769, 1350, 1748, 1822
BstX2I	RGATCY	7 cut(s)	298, 325, 1043, 1399, 1415, 1610, 1862
BstYI	RGATCY	7 cut(s)	298, 325, 1043, 1399, 1415, 1610, 1862
BstZ17I	GTATAC	1 cut(s)	1315
Bsu15I	ATCGAT	1 cut(s)	1621
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	147, 408, 1772
BsuTUI	ATCGAT	1 cut(s)	1621
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	178, 1387, 1519
BtsIMutI	CAGTG	4 cut(s)	54, 225, 1086, 1092
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	6 cut(s)	209, 213, 555, 635, 837, 1734
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	962
Cfr13I	GGNCC	1 cut(s)	1969
Cfr42I	CCGCGG	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	1621
CseI	GACGC	1 cut(s)	1987
CsiI	ACCWGGT	1 cut(s)	1989
Csp6I	GTAC	3 cut(s)	112, 960, 1644
CspAI	ACCGGT	1 cut(s)	962
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	8 cut(s)	593, 707, 734, 1112, 1228, 1556, 1733, 1871
CviQI	GTAC	3 cut(s)	112, 960, 1644
DraIII	CACNNNGTG	1 cut(s)	1115
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	1680
EarI	CTCTTC	1 cut(s)	1680
Ecl136II	GAGCTC	1 cut(s)	1726
Eco130I	CCWWGG	2 cut(s)	1293, 1588
Eco24I	GRGCYC	1 cut(s)	1728
Eco32I	GATATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	1969
Eco53kI	GAGCTC	1 cut(s)	1726
Eco57I	CTGAAG	2 cut(s)	957, 1116
Eco81I	CCTNAGG	1 cut(s)	678
EcoICRI	GAGCTC	1 cut(s)	1726
EcoO109I	RGGNCCY	1 cut(s)	1969
EcoRII	CCWGG	1 cut(s)	1989
EcoRV	GATATC	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	1293, 1588
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	1 cut(s)	1728
ErhI	CCWWGG	2 cut(s)	1293, 1588
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	8 cut(s)	596, 710, 737, 1115, 1231, 1559, 1736, 1874
FalI	AAGNNNNNCTT	4 cut(s)	380, 412, 930, 962
FaqI	GGGAC	1 cut(s)	1563
FatI	CATG	8 cut(s)	592, 706, 733, 1111, 1227, 1555, 1732, 1870
FauI	CCCGC	1 cut(s)	200
FauNDI	CATATG	1 cut(s)	1628
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	1314
Fnu4HI	GCNGC	5 cut(s)	500, 783, 1364, 1737, 1836
FokI	GGATG	3 cut(s)	185, 1394, 1526
FriOI	GRGCYC	1 cut(s)	1728
Fsp4HI	GCNGC	5 cut(s)	500, 783, 1364, 1737, 1836
FspBI	CTAG	5 cut(s)	249, 927, 957, 998, 1826
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	5 cut(s)	500, 783, 1364, 1737, 1836
GsaI	CCCAGC	1 cut(s)	1639
GsuI	CTGGAG	4 cut(s)	162, 735, 1285, 1928
HaeIII	GGCC	3 cut(s)	147, 408, 1772
HapII	CCGG	4 cut(s)	323, 643, 963, 1077
HgaI	GACGC	1 cut(s)	1987
HhaI	GCGC	1 cut(s)	633
Hin1I	GRCGYC	1 cut(s)	1998
Hin1II	CATG	8 cut(s)	596, 710, 737, 1115, 1231, 1559, 1736, 1874
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	924
HindII	GTYRAC	1 cut(s)	924
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	9 cut(s)	47, 245, 313, 611, 952, 1193, 1298, 1690, 1718
HpaII	CCGG	4 cut(s)	323, 643, 963, 1077
HphI	GGTGA	4 cut(s)	497, 694, 1222, 1604
Hpy166II	GTNNAC	4 cut(s)	924, 1315, 1504, 1935
Hpy188I	TCNGA	8 cut(s)	52, 751, 1393, 1404, 1528, 1695, 1723, 1803
Hpy8I	GTNNAC	4 cut(s)	924, 1315, 1504, 1935
HpyAV	CCTTC	6 cut(s)	395, 716, 884, 983, 1025, 1753
HpyCH4III	ACNGT	8 cut(s)	111, 526, 580, 745, 1090, 1923, 1932, 2068
HpyCH4IV	ACGT	2 cut(s)	1245, 1711
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 639, 845, 1369
HpySE526I	ACGT	2 cut(s)	1245, 1711
Hsp92I	GRCGYC	1 cut(s)	1998
Hsp92II	CATG	8 cut(s)	596, 710, 737, 1115, 1231, 1559, 1736, 1874
HspAI	GCGC	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	673, 1488, 1763
Lsp1109I	GCAGC	4 cut(s)	769, 1350, 1748, 1822
LweI	GCATC	6 cut(s)	146, 1261, 1372, 1394, 1504, 1930
MabI	ACCWGGT	1 cut(s)	1989
MaeI	CTAG	5 cut(s)	249, 927, 957, 998, 1826
MaeII	ACGT	2 cut(s)	1245, 1711
MaeIII	GTNAC	9 cut(s)	97, 223, 739, 965, 1090, 1210, 1408, 1530, 1603
MboII	GAAGA	9 cut(s)	464, 658, 667, 701, 731, 1447, 1697, 1754, 1757
MfeI	CAATTG	1 cut(s)	1794
MflI	RGATCY	7 cut(s)	298, 325, 1043, 1399, 1415, 1610, 1862
MhlI	GDGCHC	2 cut(s)	213, 1728
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	9 cut(s)	39, 281, 384, 829, 865, 1429, 1676, 1749, 1794
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	1292, 1727
MmeI	TCCRAC	2 cut(s)	852, 1021
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	1387
MroXI	GAANNNNTTC	1 cut(s)	1749
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	5 cut(s)	279, 387, 1538, 1818, 1896
MslI	CAYNNNNRTG	1 cut(s)	1560
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	207, 1739
MspI	CCGG	4 cut(s)	323, 643, 963, 1077
MspR9I	CCNGG	3 cut(s)	323, 1078, 1991
MunI	CAATTG	1 cut(s)	1794
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	1 cut(s)	1991
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	101, 639, 845, 1369
NciI	CCSGG	2 cut(s)	323, 1078
NdeI	CATATG	1 cut(s)	1628
NlaIII	CATG	8 cut(s)	596, 710, 737, 1115, 1231, 1559, 1736, 1874
NlaIV	GGNNCC	2 cut(s)	327, 675
NmuCI	GTSAC	5 cut(s)	223, 1090, 1210, 1408, 1603
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	1 cut(s)	1736
PaeI	GCATGC	1 cut(s)	1736
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	1639
PctI	GAATGC	1 cut(s)	1087
PdmI	GAANNNNTTC	1 cut(s)	1749
PfeI	GAWTC	7 cut(s)	47, 245, 313, 611, 952, 1193, 1690
PinAI	ACCGGT	1 cut(s)	962
PkrI	GCNGC	5 cut(s)	501, 784, 1365, 1738, 1837
PleI	GAGTC	2 cut(s)	1292, 1726
PpsI	GAGTC	2 cut(s)	1292, 1726
PpuMI	RGGWCCY	1 cut(s)	1969
PshAI	GACNNNNGTC	1 cut(s)	2025
PshBI	ATTAAT	1 cut(s)	1818
Psp124BI	GAGCTC	1 cut(s)	1728
Psp1406I	AACGTT	1 cut(s)	1711
Psp5II	RGGWCCY	1 cut(s)	1969
Psp6I	CCWGG	1 cut(s)	1989
PspFI	CCCAGC	1 cut(s)	1635
PspGI	CCWGG	1 cut(s)	1989
PspN4I	GGNNCC	2 cut(s)	327, 675
PspPI	GGNCC	1 cut(s)	1969
PspPPI	RGGWCCY	1 cut(s)	1969
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	7 cut(s)	298, 325, 1043, 1399, 1415, 1610, 1862
RsaI	GTAC	3 cut(s)	113, 961, 1645
RsaNI	GTAC	3 cut(s)	112, 960, 1644
RseI	CAYNNNNRTG	1 cut(s)	1560
SacI	GAGCTC	1 cut(s)	1728
SacII	CCGCGG	1 cut(s)	208
SaqAI	TTAA	5 cut(s)	279, 387, 1538, 1818, 1896
SatI	GCNGC	5 cut(s)	500, 783, 1364, 1737, 1836
Sau96I	GGNCC	1 cut(s)	1969
SchI	GAGTC	2 cut(s)	1292, 1727
ScrFI	CCNGG	3 cut(s)	323, 1078, 1991
SduI	GDGCHC	2 cut(s)	213, 1728
SexAI	ACCWGGT	1 cut(s)	1989
SfaNI	GCATC	6 cut(s)	146, 1261, 1372, 1394, 1504, 1930
SfcI	CTRYAG	2 cut(s)	357, 2074
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	1969
SmiMI	CAYNNNNRTG	1 cut(s)	1560
SmlI	CTYRAG	2 cut(s)	1419, 1727
SmoI	CTYRAG	2 cut(s)	1419, 1727
SpeI	ACTAGT	1 cut(s)	926
SphI	GCATGC	1 cut(s)	1736
Sse9I	AATT	9 cut(s)	39, 281, 384, 829, 865, 1429, 1676, 1749, 1794
SsiI	CCGC	5 cut(s)	205, 207, 499, 1739, 2032
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	5 cut(s)	249, 927, 957, 998, 1826
SstI	GAGCTC	1 cut(s)	1728
StyD4I	CCNGG	3 cut(s)	321, 1076, 1989
StyI	CCWWGG	2 cut(s)	1293, 1588
TaaI	ACNGT	8 cut(s)	111, 526, 580, 745, 1090, 1923, 1932, 2068
TaiI	ACGT	2 cut(s)	1248, 1714
TaqI	TCGA	2 cut(s)	778, 1621
TaqII	GACCGA	1 cut(s)	378
TasI	AATT	9 cut(s)	39, 281, 384, 829, 865, 1429, 1676, 1749, 1794
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	7 cut(s)	47, 245, 313, 611, 952, 1193, 1690
Tru1I	TTAA	5 cut(s)	279, 387, 1538, 1818, 1896
Tru9I	TTAA	5 cut(s)	279, 387, 1538, 1818, 1896
TscAI	CASTG	4 cut(s)	61, 232, 1093, 1099
TseFI	GTSAC	5 cut(s)	223, 1090, 1210, 1408, 1603
TseI	GCWGC	4 cut(s)	782, 1363, 1736, 1835
Tsp45I	GTSAC	5 cut(s)	223, 1090, 1210, 1408, 1603
TspRI	CASTG	4 cut(s)	61, 232, 1093, 1099
VpaK11BI	GGWCC	1 cut(s)	1969
VspI	ATTAAT	1 cut(s)	1818
XapI	RAATTY	5 cut(s)	39, 829, 1429, 1676, 1749
XceI	RCATGY	1 cut(s)	1736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1282
XmiI	GTMKAC	1 cut(s)	1314
XmnI	GAANNNNTTC	1 cut(s)	1749
XspI	CTAG	5 cut(s)	249, 927, 957, 998, 1826
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.