Rroxscaffold_2G00078420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007547
Physical Location & Seq
Forward (+)
1730925 .. 1734792
3868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078420.1

Sequence Viewer

Length: 882 bp
ATGCCCACCGAATTGAGTATGAGATCTCGGCCTTCACGAGGTTTCGTCGAAATGGTGGATGTGGAATTTCATATACGGAACCTGGTAAATGACGGCGTGGCGGAGGTCTTCCCCGCGACGGCGCATGGCGATGAAGTGGACGGCGAAGATGCCGATCGTGGATTCCATGGTCATGGTGATATGGATGATGGAAGGGTTATGGCGATAGAAGGAGAGGAAAGAAGGAAAAGAGAGCGGATGTTTGTTTCTGCAATTCCGAGGATGGTGAAGACCAAAGTCTCTGAAATCCCGAAGATTACTTACCAGGAAAGCAGATGTGGTGGTGGTGATGAAGAGTCATGCCCAAGTTCTAAGGCTGATGAAATTAATATCCCCCCTTGGACACTAATAATCCCGAAGTTGGAAGATCACACTAATCTTCTACAGCTCCCTGACGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACCTTGATTCAGTGAGTGCATCTACAGCAGCCATATTAGTGCCAGTGCTCGGTGGTACTATGAGCCTTTTGAAAAAAAAGTTACAAAAGGAGGTTGCTGGATATGATGAGGACGAAGATGACGAGGAGGAAAAGGATGTTGGCAATCAACATGAAATGAATCAGGAGGAGGGTGAGCAAAGAGAGGAGAATAAGCATATCAACAGCTTTCATAAGGAGGATGTTATTGTTTTAAGTGATGAAGATGACGAGGAGGAGAAGGTTGGGAAGGTCTATTCAAAGCCGCTGTTGATGAAAATGAAGGTTGATGACCTTAGACATTTAGCTGTTAAGCTGCGATTGAAAAATAGCTCCTGGGATTCAAAGGAGAAGCTAGTTGATCGTATTGCGAAGGCACTAGGTGTTTGTAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.93

Weight (kDa)

4.8

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 1 cut(s) 116
AciI CCGC 4 cut(s) 101, 114, 235, 749
AcsI RAATTY 1 cut(s) 65
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 4 cut(s) 38, 118, 400, 515
AgsI TTSAA 4 cut(s) 538, 744, 808, 828
AjnI CCWGG 3 cut(s) 81, 303, 818
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 7 cut(s) 427, 464, 672, 791, 799, 816, 838
AluI AGCT 7 cut(s) 427, 464, 672, 791, 799, 816, 838
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 283
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 494, 799
ApoI RAATTY 1 cut(s) 65
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 4 cut(s) 188, 277, 338, 650
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 100, 275
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 506, 786
BccI CCATC 2 cut(s) 182, 256
BceAI ACGGC 3 cut(s) 109, 135, 157
BciT130I CCWGG 3 cut(s) 83, 305, 820
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 2 cut(s) 839, 863
BfmI CTRYAG 2 cut(s) 422, 489
BglII AGATCT 1 cut(s) 23
BisI GCNGC 3 cut(s) 495, 749, 800
BlsI GCNGC 3 cut(s) 496, 750, 801
Bme1390I CCNGG 3 cut(s) 83, 305, 820
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 3 cut(s) 83, 305, 820
BmsI GCATC 2 cut(s) 139, 494
BoxI GACNNNNGTC 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 100, 275
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 4 cut(s) 166, 257, 377, 819
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 118, 400, 515
Bse1I ACTGG 1 cut(s) 509
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 3 cut(s) 83, 305, 820
BseDI CCNNGG 4 cut(s) 166, 257, 377, 819
BseGI GGATG 6 cut(s) 64, 190, 243, 267, 607, 691
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 4 cut(s) 38, 118, 400, 515
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 5 cut(s) 605, 647, 665, 731, 734
BseXI GCAGC 2 cut(s) 506, 786
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 516
BslI CCNNNNNNNGG 4 cut(s) 38, 118, 400, 515
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 5 cut(s) 23, 154, 406, 436, 844
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 4 cut(s) 101, 114, 235, 749
BspANI GGCC 1 cut(s) 31
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 4 cut(s) 166, 257, 377, 819
BssMI GATC 5 cut(s) 23, 154, 406, 436, 844
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 166, 377
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 3 cut(s) 83, 305, 820
Bst6I CTCTTC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 351, 779
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 6 cut(s) 64, 190, 243, 267, 607, 691
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 5 cut(s) 26, 157, 409, 439, 847
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 5 cut(s) 23, 154, 406, 436, 844
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 3 cut(s) 83, 305, 820
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 81, 303, 818
BstSFI CTRYAG 2 cut(s) 422, 489
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 506, 786
BstV2I GAAGAC 2 cut(s) 100, 275
BstX2I RGATCY 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 6 cut(s) 64, 190, 243, 267, 607, 691
BtsIMutI CAGTG 2 cut(s) 483, 516
CfoI GCGC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 1 cut(s) 522
CviAII CATG 5 cut(s) 125, 167, 173, 339, 617
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 2 cut(s) 351, 779
DpnI GATC 5 cut(s) 25, 156, 408, 438, 846
DpnII GATC 5 cut(s) 23, 154, 406, 436, 844
DraIII CACNNNGTG 1 cut(s) 866
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 166, 377
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRII CCWGG 3 cut(s) 81, 303, 818
EcoT14I CCWWGG 2 cut(s) 166, 377
ErhI CCWWGG 2 cut(s) 166, 377
FaeI CATG 5 cut(s) 128, 170, 176, 342, 620
FatI CATG 5 cut(s) 124, 166, 172, 338, 616
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 495, 749, 800
FokI GGATG 6 cut(s) 71, 197, 250, 274, 614, 698
Fsp4HI GCNGC 3 cut(s) 495, 749, 800
FspBI CTAG 2 cut(s) 839, 863
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 495, 749, 800
HaeIII GGCC 1 cut(s) 31
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 128, 170, 176, 342, 620
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 5 cut(s) 162, 335, 473, 625, 824
HphI GGTGA 4 cut(s) 188, 277, 338, 650
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 258, 283
Hpy188III TCNNGA 4 cut(s) 36, 289, 394, 629
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 50, 121
HpyAV CCTTC 8 cut(s) 42, 186, 203, 216, 718, 727, 760, 850
HpyCH4V TGCA 2 cut(s) 251, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 351, 779
Hsp92II CATG 5 cut(s) 128, 170, 176, 342, 620
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 5 cut(s) 23, 154, 406, 436, 844
LmnI GCTCC 2 cut(s) 432, 821
Lsp1109I GCAGC 2 cut(s) 506, 786
LweI GCATC 2 cut(s) 139, 494
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 2 cut(s) 839, 863
MaeIII GTNAC 1 cut(s) 546
MalI GATC 5 cut(s) 25, 156, 408, 438, 846
MbiI CCGCTC 1 cut(s) 235
MboI GATC 5 cut(s) 23, 154, 406, 436, 844
MboII GAAGA 9 cut(s) 100, 158, 280, 304, 344, 410, 416, 593, 719
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 4 cut(s) 11, 65, 252, 363
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 381
MseI TTAA 3 cut(s) 366, 698, 795
MslI CAYNNNNRTG 3 cut(s) 129, 171, 503
MspA1I CMGCKG 2 cut(s) 464, 751
MspR9I CCNGG 3 cut(s) 83, 305, 820
MvaI CCWGG 3 cut(s) 83, 305, 820
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 491
NcoI CCATGG 1 cut(s) 166
NdeII GATC 5 cut(s) 23, 154, 406, 436, 844
NlaIII CATG 5 cut(s) 128, 170, 176, 342, 620
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 7
PcsI WCGNNNNNNNCGW 2 cut(s) 34, 585
PfeI GAWTC 4 cut(s) 162, 473, 625, 824
PkrI GCNGC 3 cut(s) 496, 750, 801
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshAI GACNNNNGTC 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 81, 303, 818
PspGI CCWGG 3 cut(s) 81, 303, 818
PspN4I GGNNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 23
PvuI CGATCG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 3 cut(s) 129, 171, 503
SaqAI TTAA 3 cut(s) 366, 698, 795
SatI GCNGC 3 cut(s) 495, 749, 800
Sau3AI GATC 5 cut(s) 23, 154, 406, 436, 844
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 3 cut(s) 83, 305, 820
SduI GDGCHC 1 cut(s) 516
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 2 cut(s) 139, 494
SfcI CTRYAG 2 cut(s) 422, 489
SmiMI CAYNNNNRTG 3 cut(s) 129, 171, 503
Sse9I AATT 4 cut(s) 11, 65, 252, 363
SsiI CCGC 4 cut(s) 101, 114, 235, 749
SspMI CTAG 2 cut(s) 839, 863
StyD4I CCNGG 3 cut(s) 81, 303, 818
StyI CCWWGG 2 cut(s) 166, 377
TaqI TCGA 2 cut(s) 48, 454
TasI AATT 4 cut(s) 11, 65, 252, 363
TauI GCSGC 1 cut(s) 751
TfiI GAWTC 4 cut(s) 162, 473, 625, 824
Tru1I TTAA 3 cut(s) 366, 698, 795
Tru9I TTAA 3 cut(s) 366, 698, 795
TscAI CASTG 2 cut(s) 483, 516
TseI GCWGC 2 cut(s) 494, 799
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 2 cut(s) 483, 516
VspI ATTAAT 1 cut(s) 366
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 65
XspI CTAG 2 cut(s) 839, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.