Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003188.1

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

190524 .. 200304

Gene Structure 9781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003188.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

atgcatttccaccagttggtttctacgccagcaattaaacctatattaaattctctgaaagagactctttatcccggattaaaggaaagaaaagatattattggttacaacctcgccgggatcagtcacattaaggtgcgaaaaatgattctctggattgacttgatctcatcatacccaaaagttgaatacatccaacttctcccaactggtccctgcaacacacactcgctctacaacactctcccctactctaaatactcatccttattcccacaccaatcaaactccatttcaagatttgtttctgcaattccgaggatggtgaagaccaaagtctctgaaatcccgaagattacttaccaggcggatatgatggatgaattgaaggcggcacatgttcttatgggtattggtgctccggaggcggtggcggacggtgttccttcagcggcggcggtggaggttgcttatgcctttttcactgctcttattgcttccttgcaaaatttgaaatttttgcttagtttcgtgagggaaagcagatgtggtggtggtgatgaagagtcacgcccaagttctaaggctgatgaaattaatatccccccttggacactaataatcccgaagttggaagatcacactaatcttctacagctccctgacgatcaggttgtgggtgttcgacttccagctgaccttgattcagtgagtgcagctacagcggtcatgttagtgccagtgctcggtcgtactatgagccttttgaaaaaaaagttgcaaaaggaggttgctggatatgatgaggacgacgacgatgacaacgaggaaaaggatgctggcaatcaacatgaagagaatcagaaaaggttgttagaacgttatgagtctgagctcaagcatgcagcggaagaagaaattcctgagaagggagctgtggccttagtgggaaaggaaaaaacaattgatctgacagatgaacttattaatgcactagatgtagctgccgaatatgagtgcttaccgttcacagatgctttgaggcttttgccttacttggaggaccttgcttcatatcctgaccaggaaagaaaagatattattggttacaacctcgccgggatcagtcacattaaggtgcgaaaaatgattctctggattgacttgatctcatcatacccaaaagttgaatacatccaacttctcccaactggtccctgcaacacacactcgctctacaacactctcccctactctaaatactcatccttattcccacaccaatcaaactccatttcaagatttgtttctgcaattccgaggatggtgaagaccaaagtctctgaaatcccgaagattacttaccaggcggatatgatggatgaattgaaggcggcacatgttcttatgggtattggtgctccggaggcggtggcggacggtgttccttcagcggcggcggtggaggttgcttatgcctttttcactgctcttattgcttccttgcaaaatttgaaatttttgcttagtttcgtgagggaaagcagatgtggtggtggtgatgaagagtcacgcccaagttctaaggctgatgaaattaatatccccccttggacactaataatcccgaagttggaagatcacactaatcttctacagctccctgacgatcaggttgtgggtgttcgacttccagctgaccttgattcagtgagtgcatctacagcggccatgttagtgccagtgctcggtggtactatgagccttttgaaaaaaaagttgcaaaaggaggttgctggatatgatgaggacgacgacgatgacaacgaggaaaaggatgctggcaatcaacatacacagctctactctgtagttagccaaattttaaactcaaagttattgttgcaggaaatgaatcaggaggagggtgagcaaagaaaggagaataaacataaggaggatgttattgttttaagtgatgacgatgaagatgacgagaagaagaaggctgggaaggtctattcaaagccgctgttgatgaaaatgaaggttgatgaccttagacatttagctgttaagctgcgattgaaaaatagctcctgggattcaaaggagaagctggttgatcgtattgcaaaggcactaggtgtttgtaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

720

Amino Acids

80.09

Weight (kDa)

5.19

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccIII	TCCGGA	2 cut(s)	421, 1423
AclI	AACGTT	1 cut(s)	880
AclWI	GGATC	2 cut(s)	128, 1130
AcoI	YGGCCR	1 cut(s)	1728
AcsI	RAATTY	7 cut(s)	49, 508, 515, 918, 1510, 1517, 1881
AcuI	CTGAAG	2 cut(s)	432, 1434
AdeI	CACNNNGTG	1 cut(s)	2147
AfaI	GTAC	2 cut(s)	754, 1756
AfiI	CCNNNNNNNGG	6 cut(s)	16, 631, 746, 929, 1633, 1748
AflIII	ACRYGT	2 cut(s)	397, 1399
AjnI	CCWGG	4 cut(s)	363, 1083, 1365, 2099
Alw21I	GWGCWC	5 cut(s)	421, 747, 897, 1423, 1749
Alw26I	GTCTC	3 cut(s)	56, 343, 1345
AlwI	GGATC	2 cut(s)	128, 1130
Aor13HI	TCCGGA	2 cut(s)	421, 1423
AoxI	GGCC	2 cut(s)	939, 1728
ApeKI	GCWGC	4 cut(s)	716, 905, 1004, 2080
ApoI	RAATTY	7 cut(s)	49, 508, 515, 918, 1510, 1517, 1881
AseI	ATTAAT	3 cut(s)	597, 987, 1599
Asp700I	GAANNNNTTC	1 cut(s)	918
AspS9I	GGNCC	3 cut(s)	212, 1063, 1214
AsuC2I	CCSGG	3 cut(s)	75, 118, 1120
AsuHPI	GGTGA	5 cut(s)	337, 569, 1339, 1571, 1940
AvaII	GGWCC	3 cut(s)	212, 1063, 1214
BanII	GRGCYC	1 cut(s)	897
BarI	GAAGNNNNNNTAC	4 cut(s)	344, 376, 1346, 1378
BbsI	GAAGAC	2 cut(s)	335, 1337
Bbv12I	GWGCWC	5 cut(s)	421, 747, 897, 1423, 1749
BbvI	GCAGC	4 cut(s)	728, 917, 991, 2067
BccI	CCATC	4 cut(s)	316, 370, 1318, 1372
BciT130I	CCWGG	4 cut(s)	365, 1085, 1367, 2101
BcnI	CCSGG	3 cut(s)	75, 118, 1120
BcoDI	GTCTC	3 cut(s)	56, 343, 1345
BfaI	CTAG	2 cut(s)	995, 2144
BfmI	CTRYAG	5 cut(s)	653, 720, 1655, 1722, 1869
Bme1390I	CCNGG	7 cut(s)	75, 118, 365, 1085, 1120, 1367, 2101
Bme18I	GGWCC	3 cut(s)	212, 1063, 1214
BmgT120I	GGNCC	3 cut(s)	212, 1063, 1214
BmiI	GGNNCC	2 cut(s)	214, 1216
BmrFI	CCNGG	7 cut(s)	75, 118, 365, 1085, 1120, 1367, 2101
BmsI	GCATC	4 cut(s)	826, 1024, 1727, 1828
BoxI	GACNNNNGTC	2 cut(s)	335, 1337
BpiI	GAAGAC	2 cut(s)	335, 1337
BpuEI	CTTGAG	1 cut(s)	881
BpuMI	CCSGG	3 cut(s)	75, 118, 1120
BsaJI	CCNNGG	5 cut(s)	317, 608, 1319, 1610, 2100
BsaWI	WCCGGW	2 cut(s)	421, 1423
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 631, 746, 929, 1633, 1748
Bse1I	ACTGG	5 cut(s)	13, 214, 740, 1216, 1742
BseAI	TCCGGA	2 cut(s)	421, 1423
BseBI	CCWGG	4 cut(s)	365, 1085, 1367, 2101
BseDI	CCNNGG	5 cut(s)	317, 608, 1319, 1610, 2100
BseLI	CCNNNNNNNGG	6 cut(s)	16, 631, 746, 929, 1633, 1748
BseMII	CTCAG	2 cut(s)	882, 915
BseNI	ACTGG	5 cut(s)	13, 214, 740, 1216, 1742
BseRI	GAGGAG	1 cut(s)	1937
BseXI	GCAGC	4 cut(s)	728, 917, 991, 2067
BseYI	CCCAGC	1 cut(s)	2009
BsgI	GTGCAG	1 cut(s)	735
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	2 cut(s)	941, 1730
BsiEI	CGRYCG	1 cut(s)	751
BsiHKAI	GWGCWC	5 cut(s)	421, 747, 897, 1423, 1749
BsiSI	CCGG	5 cut(s)	75, 117, 422, 1119, 1424
BslFI	GGGAC	2 cut(s)	198, 1200
BslI	CCNNNNNNNGG	6 cut(s)	16, 631, 746, 929, 1633, 1748
BsmAI	GTCTC	3 cut(s)	56, 343, 1345
BsmFI	GGGAC	2 cut(s)	198, 1200
BsnI	GGCC	2 cut(s)	941, 1730
Bsp1286I	GDGCHC	5 cut(s)	421, 747, 897, 1423, 1749
Bsp13I	TCCGGA	2 cut(s)	421, 1423
BspANI	GGCC	2 cut(s)	941, 1730
BspCNI	CTCAG	2 cut(s)	883, 916
BspEI	TCCGGA	2 cut(s)	421, 1423
BspLI	GGNNCC	2 cut(s)	214, 1216
BspPI	GGATC	2 cut(s)	128, 1130
BsrI	ACTGG	5 cut(s)	13, 214, 740, 1216, 1742
BssECI	CCNNGG	5 cut(s)	317, 608, 1319, 1610, 2100
BssT1I	CCWWGG	2 cut(s)	608, 1610
Bst2UI	CCWGG	4 cut(s)	365, 1085, 1367, 2101
Bst4CI	ACNGT	3 cut(s)	440, 1026, 1442
Bst6I	CTCTTC	3 cut(s)	558, 849, 1560
BstC8I	GCNNGC	4 cut(s)	30, 841, 903, 1843
BstDEI	CTNAG	8 cut(s)	524, 582, 891, 924, 943, 1526, 1584, 2060
BstMAI	GTCTC	3 cut(s)	56, 343, 1345
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	6 cut(s)	425, 494, 722, 1427, 1496, 1724
BstNI	CCWGG	4 cut(s)	365, 1085, 1367, 2101
BstNSI	RCATGY	3 cut(s)	401, 905, 1403
BstPAI	GACNNNNGTC	2 cut(s)	335, 1337
BstSCI	CCNGG	7 cut(s)	73, 116, 363, 1083, 1118, 1365, 2099
BstSFI	CTRYAG	5 cut(s)	653, 720, 1655, 1722, 1869
BstV1I	GCAGC	4 cut(s)	728, 917, 991, 2067
BstV2I	GAAGAC	2 cut(s)	335, 1337
BsuRI	GGCC	2 cut(s)	941, 1730
BtsI	GCAGTG	2 cut(s)	483, 1485
BtsIMutI	CAGTG	6 cut(s)	483, 714, 747, 1485, 1716, 1749
Cac8I	GCNNGC	4 cut(s)	30, 841, 903, 1843
Cfr13I	GGNCC	3 cut(s)	212, 1063, 1214
Csp6I	GTAC	2 cut(s)	753, 1755
CviAII	CATG	6 cut(s)	398, 730, 851, 902, 1400, 1732
CviQI	GTAC	2 cut(s)	753, 1755
DdeI	CTNAG	8 cut(s)	524, 582, 891, 924, 943, 1526, 1584, 2060
DraI	TTTAAA	1 cut(s)	1887
DraIII	CACNNNGTG	1 cut(s)	2147
EaeI	YGGCCR	1 cut(s)	1728
Eam1104I	CTCTTC	3 cut(s)	558, 849, 1560
EarI	CTCTTC	3 cut(s)	558, 849, 1560
EciI	GGCGGA	4 cut(s)	383, 449, 1385, 1451
Ecl136II	GAGCTC	1 cut(s)	895
Eco130I	CCWWGG	2 cut(s)	608, 1610
Eco24I	GRGCYC	1 cut(s)	897
Eco47I	GGWCC	3 cut(s)	212, 1063, 1214
Eco53kI	GAGCTC	1 cut(s)	895
Eco57I	CTGAAG	2 cut(s)	432, 1434
EcoICRI	GAGCTC	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	1063
EcoRII	CCWGG	4 cut(s)	363, 1083, 1365, 2099
EcoT14I	CCWWGG	2 cut(s)	608, 1610
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	897
ErhI	CCWWGG	2 cut(s)	608, 1610
FaeI	CATG	6 cut(s)	401, 733, 854, 905, 1403, 1735
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	198, 1200
FatI	CATG	6 cut(s)	397, 729, 850, 901, 1399, 1731
FriOI	GRGCYC	1 cut(s)	897
FspBI	CTAG	2 cut(s)	995, 2144
GsaI	CCCAGC	1 cut(s)	2013
HaeIII	GGCC	2 cut(s)	941, 1730
HapII	CCGG	5 cut(s)	75, 117, 422, 1119, 1424
Hin1II	CATG	6 cut(s)	401, 733, 854, 905, 1403, 1735
HpaII	CCGG	5 cut(s)	75, 117, 422, 1119, 1424
HphI	GGTGA	5 cut(s)	337, 569, 1339, 1571, 1940
Hpy166II	GTNNAC	1 cut(s)	1029
Hpy188I	TCNGA	8 cut(s)	57, 318, 343, 864, 892, 972, 1320, 1345
Hpy8I	GTNNAC	1 cut(s)	1029
Hpy99I	CGWCG	4 cut(s)	815, 818, 1817, 1820
HpyAV	CCTTC	8 cut(s)	382, 456, 922, 1384, 1458, 1999, 2008, 2041
HpyCH4III	ACNGT	3 cut(s)	440, 1026, 1442
HpyCH4IV	ACGT	1 cut(s)	880
HpyF10VI	GCNNNNNNNGC	6 cut(s)	425, 494, 722, 1427, 1496, 1724
HpyF3I	CTNAG	8 cut(s)	524, 582, 891, 924, 943, 1526, 1584, 2060
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	6 cut(s)	401, 733, 854, 905, 1403, 1735
Kpn2I	TCCGGA	2 cut(s)	421, 1423
LmnI	GCTCC	6 cut(s)	424, 663, 932, 1426, 1665, 2102
Lsp1109I	GCAGC	4 cut(s)	728, 917, 991, 2067
LweI	GCATC	4 cut(s)	826, 1024, 1727, 1828
MaeI	CTAG	2 cut(s)	995, 2144
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	6 cut(s)	104, 125, 567, 1106, 1127, 1569
MfeI	CAATTG	1 cut(s)	963
MhlI	GDGCHC	5 cut(s)	421, 747, 897, 1423, 1749
MlyI	GAGTC	4 cut(s)	58, 575, 896, 1577
MmeI	TCCRAC	4 cut(s)	220, 612, 1222, 1614
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	2 cut(s)	421, 1423
MroXI	GAANNNNTTC	1 cut(s)	918
MslI	CAYNNNNRTG	4 cut(s)	134, 734, 1136, 1736
MspA1I	CMGCKG	8 cut(s)	452, 695, 725, 908, 1454, 1697, 1727, 2032
MspI	CCGG	5 cut(s)	75, 117, 422, 1119, 1424
MspR9I	CCNGG	7 cut(s)	75, 118, 365, 1085, 1120, 1367, 2101
MunI	CAATTG	1 cut(s)	963
MvaI	CCWGG	4 cut(s)	365, 1085, 1367, 2101
MwoI	GCNNNNNNNGC	6 cut(s)	425, 494, 722, 1427, 1496, 1724
NciI	CCSGG	3 cut(s)	75, 118, 1120
NlaIII	CATG	6 cut(s)	401, 733, 854, 905, 1403, 1735
NlaIV	GGNNCC	2 cut(s)	214, 1216
NmuCI	GTSAC	4 cut(s)	125, 567, 1127, 1569
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	401, 905, 1403
PaeI	GCATGC	1 cut(s)	905
PciI	ACATGT	2 cut(s)	397, 1399
PcsI	WCGNNNNNNNCGW	2 cut(s)	822, 1824
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	7 cut(s)	148, 704, 859, 1150, 1706, 1915, 2105
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	73
PleI	GAGTC	4 cut(s)	58, 574, 895, 1576
PpsI	GAGTC	4 cut(s)	58, 574, 895, 1576
PpuMI	RGGWCCY	1 cut(s)	1063
PscI	ACATGT	2 cut(s)	397, 1399
PshAI	GACNNNNGTC	2 cut(s)	335, 1337
PshBI	ATTAAT	3 cut(s)	597, 987, 1599
Psp124BI	GAGCTC	1 cut(s)	897
Psp1406I	AACGTT	1 cut(s)	880
Psp5II	RGGWCCY	1 cut(s)	1063
Psp6I	CCWGG	4 cut(s)	363, 1083, 1365, 2099
PspFI	CCCAGC	1 cut(s)	2009
PspGI	CCWGG	4 cut(s)	363, 1083, 1365, 2099
PspN4I	GGNNCC	2 cut(s)	214, 1216
PspPI	GGNCC	3 cut(s)	212, 1063, 1214
PspPPI	RGGWCCY	1 cut(s)	1063
PvuII	CAGCTG	2 cut(s)	695, 1697
RsaI	GTAC	2 cut(s)	754, 1756
RsaNI	GTAC	2 cut(s)	753, 1755
RseI	CAYNNNNRTG	4 cut(s)	134, 734, 1136, 1736
SacI	GAGCTC	1 cut(s)	897
Sau96I	GGNCC	3 cut(s)	212, 1063, 1214
SchI	GAGTC	4 cut(s)	58, 575, 896, 1577
ScrFI	CCNGG	7 cut(s)	75, 118, 365, 1085, 1120, 1367, 2101
SduI	GDGCHC	5 cut(s)	421, 747, 897, 1423, 1749
SfaNI	GCATC	4 cut(s)	826, 1024, 1727, 1828
SfcI	CTRYAG	5 cut(s)	653, 720, 1655, 1722, 1869
SinI	GGWCC	3 cut(s)	212, 1063, 1214
SmiMI	CAYNNNNRTG	4 cut(s)	134, 734, 1136, 1736
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SphI	GCATGC	1 cut(s)	905
SspMI	CTAG	2 cut(s)	995, 2144
SstI	GAGCTC	1 cut(s)	897
StyD4I	CCNGG	7 cut(s)	73, 116, 363, 1083, 1118, 1365, 2099
StyI	CCWWGG	2 cut(s)	608, 1610
TaaI	ACNGT	3 cut(s)	440, 1026, 1442
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	2 cut(s)	685, 1687
TaqII	GACCGA	1 cut(s)	737
TauI	GCSGC	8 cut(s)	395, 455, 458, 1397, 1457, 1460, 1730, 2032
TfiI	GAWTC	7 cut(s)	148, 704, 859, 1150, 1706, 1915, 2105
TscAI	CASTG	6 cut(s)	490, 714, 747, 1492, 1716, 1749
TseFI	GTSAC	4 cut(s)	125, 567, 1127, 1569
TseI	GCWGC	4 cut(s)	716, 905, 1004, 2080
Tsp45I	GTSAC	4 cut(s)	125, 567, 1127, 1569
TspRI	CASTG	6 cut(s)	490, 714, 747, 1492, 1716, 1749
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	212, 1063, 1214
VspI	ATTAAT	3 cut(s)	597, 987, 1599
XapI	RAATTY	7 cut(s)	49, 508, 515, 918, 1510, 1517, 1881
XceI	RCATGY	3 cut(s)	401, 905, 1403
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	2 cut(s)	995, 2144
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.