Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

81436233 .. 81438540

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTGAAGACCAAAGTCTCTGAAATCCCGAAGATTACTTACCAGGCGGATATGATGGATGAATTGAAGGCGGCACATGTTCTTATGGGTATTGGTGCTCCGGAGTCGGTGGCGGACGGTGTTCCTTCAGCGGCGGCGGTGGAGGAAAGCAGATGTGGTGGTGGTGATGAAAGTCACGCCCAACTCCCTGAAGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACCTTGATTCAGTGAGTGCAGCTACAGCGGTCATGTTAGTGCCAGTGCTCGGTCGTACTATGAGCCTTTTGAAAAAAAAGTTACAAAAGGAGGTTGCTGGATATGATGAGGACGACGACGATGACAACGAGGAAAAGGATGTTGGCAATCAACATGAAATGAATCAGGAGGAGGGTGAGCAAAGAAAGGAGAATAAACATAAGGAGGATGTTATTGTTTTAAGTGATGACGATGAAGATGACGAGAAGGAGAAGGCTGGGAAGGTCTATTCAAAGCCGCTGTTGATGAAAATGAAGGTTGATGACCTTAGACATTTAGCTGTTAAGCTGCGATTGAAAAATAGCTCCTGGGATTCAAAGGAGAAGCTGGTTGATCGTATTGCAAAGGCACTAGGTGTTTGTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.13

Weight (kDa)

4.78

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	8 cut(s)	47, 71, 113, 131, 134, 137, 251, 500
AcuI	CTGAAG	2 cut(s)	111, 210
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	67, 295, 495, 559, 579
AjnI	CCWGG	2 cut(s)	42, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AluBI	AGCT	6 cut(s)	221, 245, 542, 550, 567, 589
AluI	AGCT	6 cut(s)	221, 245, 542, 550, 567, 589
Alw21I	GWGCWC	2 cut(s)	100, 273
Alw26I	GTCTC	1 cut(s)	22
Aor13HI	TCCGGA	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	242, 550
AsuHPI	GGTGA	3 cut(s)	16, 176, 410
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	100, 273
BbvI	GCAGC	2 cut(s)	254, 537
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	44, 571
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	6 cut(s)	72, 132, 135, 243, 500, 551
BlsI	GCNGC	6 cut(s)	73, 133, 136, 244, 501, 552
Bme1390I	CCNGG	2 cut(s)	44, 571
BmrFI	CCNGG	2 cut(s)	44, 571
BoxI	GACNNNNGTC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	44, 571
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	3 cut(s)	64, 367, 436
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	254, 537
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	100, 273
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	100, 273
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	193, 595
BspACI	CCGC	8 cut(s)	47, 71, 113, 131, 134, 137, 251, 500
BspEI	TCCGGA	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	2 cut(s)	193, 595
Bst2UI	CCWGG	2 cut(s)	44, 571
Bst4CI	ACNGT	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	530
BstF5I	GGATG	3 cut(s)	64, 367, 436
BstKTI	GATC	2 cut(s)	196, 598
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	193, 595
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	44, 571
BstNSI	RCATGY	1 cut(s)	80
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	42, 569
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	254, 537
BstV2I	GAAGAC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	64, 367, 436
BtsIMutI	CAGTG	2 cut(s)	240, 273
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	77, 256, 377
CviJI	RGCY	9 cut(s)	221, 245, 288, 479, 499, 542, 550, 567, 589
CviKI_1	RGCY	9 cut(s)	221, 245, 288, 479, 499, 542, 550, 567, 589
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	2 cut(s)	195, 597
DpnII	GATC	2 cut(s)	193, 595
DraIII	CACNNNGTG	1 cut(s)	617
EciI	GGCGGA	2 cut(s)	62, 128
Eco57I	CTGAAG	2 cut(s)	111, 210
EcoRII	CCWGG	2 cut(s)	42, 569
FaeI	CATG	3 cut(s)	80, 259, 380
FaiI	YATR	8 cut(s)	53, 78, 86, 257, 284, 327, 378, 423
FatI	CATG	3 cut(s)	76, 255, 376
Fnu4HI	GCNGC	6 cut(s)	72, 132, 135, 243, 500, 551
FokI	GGATG	3 cut(s)	71, 374, 443
Fsp4HI	GCNGC	6 cut(s)	72, 132, 135, 243, 500, 551
FspBI	CTAG	1 cut(s)	614
GluI	GCNGC	6 cut(s)	72, 132, 135, 243, 500, 551
GsaI	CCCAGC	1 cut(s)	483
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	80, 259, 380
HinfI	GANTC	4 cut(s)	104, 230, 385, 575
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	16, 176, 410
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	3 cut(s)	28, 101, 389
Hpy99I	CGWCG	2 cut(s)	341, 344
HpyAV	CCTTC	6 cut(s)	61, 135, 463, 469, 478, 511
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	242, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	530
Hsp92II	CATG	3 cut(s)	80, 259, 380
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	193, 595
LmnI	GCTCC	2 cut(s)	103, 572
Lsp1109I	GCAGC	2 cut(s)	254, 537
MaeI	CTAG	1 cut(s)	614
MaeIII	GTNAC	2 cut(s)	173, 303
MalI	GATC	2 cut(s)	195, 597
MboI	GATC	2 cut(s)	193, 595
MboII	GAAGA	4 cut(s)	19, 43, 203, 470
MhlI	GDGCHC	2 cut(s)	100, 273
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	136, 307, 325, 346, 385, 388, 421
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	2 cut(s)	443, 546
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	4 cut(s)	131, 221, 251, 502
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	44, 571
MvaI	CCWGG	2 cut(s)	44, 571
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	2 cut(s)	193, 595
NlaIII	CATG	3 cut(s)	80, 259, 380
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	80
PciI	ACATGT	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	230, 385, 575
PkrI	GCNGC	6 cut(s)	73, 133, 136, 244, 501, 552
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	42, 569
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	42, 569
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	443, 546
SatI	GCNGC	6 cut(s)	72, 132, 135, 243, 500, 551
Sau3AI	GATC	2 cut(s)	193, 595
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	44, 571
SduI	GDGCHC	2 cut(s)	100, 273
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	8 cut(s)	47, 71, 113, 131, 134, 137, 251, 500
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	2 cut(s)	42, 569
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	211
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	62
TauI	GCSGC	4 cut(s)	74, 134, 137, 502
TfiI	GAWTC	3 cut(s)	230, 385, 575
Tru1I	TTAA	2 cut(s)	443, 546
Tru9I	TTAA	2 cut(s)	443, 546
TscAI	CASTG	2 cut(s)	240, 273
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	242, 550
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	7 cut(s)	75, 183, 393, 398, 471, 524, 530
TspRI	CASTG	2 cut(s)	240, 273
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.