Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

70041303 .. 70042472

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0575300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGGAGAAGGAGAGGTGGTCGCAAGGACTTGCAGATGATATATTGCAATTGATAGCACAACGACTGTACATATCAGATTACCTAGTGTTTCGCCAAGTATGCCCAAATTGGCGAGCCGCTGTGGATAGAGGTCTTGCCACCAGGTCTTGCCCTCCTGCTCCTCAACTTCCATGGCTTTTGCTCCACAACTTTTATGGCTTGTGGACGTCACCTGGGAATCAATATTCTCTCGATGCCTTGTACATCGAACGACACCAGTACTCCTTTCGAAGGGCACCAACATCTTTCAGATCAGAAATTATGTCGTCCCCTGTTTCTTATTCTTTCCGATATTGTGTTGGTTCAATCGAGTCGTGGCTGATCGTAGCTATTTATCAACGATGCCGCAAGAACAACAGCTCTACTGTCGTCAACTTCTTCTTCAATCCAGTATCACGTGCCCGAGTCATGCTTCCATCAAAGGACTCGTTCTTGATGAAAATTGTAGCCTCTTCACCACCAGCACCAACAACAAGGCTGCAGCAGAAGCAGCACGATTGTTTCGTGGCTGCTCTTAGTTATGGAAATCGTTTGGGTATTTGTAGGCCAACTGATACATCATGGACCGTCATTGAGACCATAGATGGGCTCGACTATAAAGATATTGAAATAATTGATCAGAAATTATATGTTGTATGTAGAGAGAAGCTTAGAGACAATAAGTACTATGTACTGGAATTTGACATACTCTCTGAAGATGACAATGTCACCGGGGCCAAATACAATTGTAGGCTCTGCATTGACATCCCGAATTTTTCTGTTTTGAATTCGATACTGTACCCTTGTCTAGCAAAAGATTCTGCATCCAAGGAATTGTTCATAATTCGAAGTAGAAGTTTGATAAGAAAAGGATTCCGAGTGTATAAGATGGAGAGCAAGACTGACGGTGAGCCATCGTGCAAGGAGGTTACTGACCTTGGTGATCGAACATTGTTTCTGAGCAACAAAAGCAATAAGGTCATCAATGACAAGACACTTGGGAAAAACTGCATCTATTTTGCTTACGATCTTGAAGGTGGTTTCGGGGTGTATTCCTTGGCAGATAGGAGCATCAAACGGGTTTACTTTCCTACGGATTACTCGTTCTCCAGCCGTGAAACTATTTGGTTCACACCACATCCGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

389

Amino Acids

44.9

Weight (kDa)

8.86

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	108 - 359	1.5e-28	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	2 cut(s)	120, 388
AcsI	RAATTY	3 cut(s)	719, 793, 808
AcuI	CTGAAG	1 cut(s)	756
AcvI	CACGTG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	6 cut(s)	71, 245, 263, 707, 714, 821
AfiI	CCNNNNNNNGG	2 cut(s)	273, 627
AgsI	TTSAA	5 cut(s)	348, 427, 650, 808, 1055
AjnI	CCWGG	2 cut(s)	143, 214
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AleI	CACNNNNGTG	1 cut(s)	1162
AloI	GAACNNNNNNTCC	2 cut(s)	1109, 1141
AluBI	AGCT	3 cut(s)	371, 402, 691
AluI	AGCT	3 cut(s)	371, 402, 691
Alw26I	GTCTC	2 cut(s)	611, 690
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	587, 756
ApeKI	GCWGC	4 cut(s)	520, 523, 532, 551
ApoI	RAATTY	3 cut(s)	719, 793, 808
AspS9I	GGNCC	2 cut(s)	606, 756
AsuC2I	CCSGG	1 cut(s)	754
AsuHPI	GGTGA	5 cut(s)	204, 489, 742, 941, 974
AsuII	TTCGAA	2 cut(s)	271, 868
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	606
BaeGI	GKGCMC	2 cut(s)	280, 445
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	633
BbrPI	CACGTG	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	507, 535, 538, 544
BccI	CCATC	4 cut(s)	466, 620, 904, 943
BceAI	ACGGC	1 cut(s)	1119
BciT130I	CCWGG	2 cut(s)	145, 216
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	611, 690
BfaI	CTAG	2 cut(s)	86, 830
BfmI	CTRYAG	1 cut(s)	521
BisI	GCNGC	6 cut(s)	120, 388, 521, 524, 533, 552
BlsI	GCNGC	6 cut(s)	121, 389, 522, 525, 534, 553
BmcAI	AGTACT	2 cut(s)	263, 707
Bme1390I	CCNGG	3 cut(s)	145, 216, 754
Bme18I	GGWCC	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	606, 756
BmiI	GGNNCC	2 cut(s)	279, 757
BmrFI	CCNGG	3 cut(s)	145, 216, 754
BmsI	GCATC	5 cut(s)	226, 374, 854, 1041, 1101
BpmI	CTGGAG	1 cut(s)	1114
Bpu14I	TTCGAA	2 cut(s)	271, 868
BpuMI	CCSGG	1 cut(s)	754
BsaAI	YACGTR	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	7 cut(s)	173, 215, 753, 849, 958, 1077, 1163
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 248, 278, 1112, 1142
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 627
Bse1I	ACTGG	3 cut(s)	259, 431, 720
BseBI	CCWGG	2 cut(s)	145, 216
BseDI	CCNNGG	7 cut(s)	173, 215, 753, 849, 958, 1077, 1163
BseGI	GGATG	3 cut(s)	786, 845, 1159
BseLI	CCNNNNNNNGG	2 cut(s)	273, 627
BseMII	CTCAG	1 cut(s)	971
BseNI	ACTGG	3 cut(s)	259, 431, 720
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	2 cut(s)	280, 445
BseXI	GCAGC	4 cut(s)	507, 535, 538, 544
BshFI	GGCC	2 cut(s)	589, 758
BshNI	GGYRCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	273, 627
BsmAI	GTCTC	2 cut(s)	611, 690
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	589, 758
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	444
Bsp119I	TTCGAA	2 cut(s)	271, 868
Bsp1286I	GDGCHC	3 cut(s)	280, 445, 633
Bsp1407I	TGTACA	2 cut(s)	69, 243
Bsp143I	GATC	5 cut(s)	293, 363, 658, 964, 1048
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	2 cut(s)	120, 388
BspANI	GGCC	2 cut(s)	589, 758
BspCNI	CTCAG	1 cut(s)	972
BspLI	GGNNCC	2 cut(s)	279, 757
BspMAI	CTGCAG	1 cut(s)	525
BspT104I	TTCGAA	2 cut(s)	271, 868
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	611
BsrGI	TGTACA	2 cut(s)	69, 243
BsrI	ACTGG	3 cut(s)	259, 431, 720
BssECI	CCNNGG	7 cut(s)	173, 215, 753, 849, 958, 1077, 1163
BssMI	GATC	5 cut(s)	293, 363, 658, 964, 1048
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	4 cut(s)	173, 849, 958, 1077
Bst2UI	CCWGG	2 cut(s)	145, 216
Bst4CI	ACNGT	5 cut(s)	69, 409, 610, 819, 929
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	209
BstAUI	TGTACA	2 cut(s)	69, 243
BstBAI	YACGTR	1 cut(s)	440
BstBI	TTCGAA	2 cut(s)	271, 868
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	557, 692, 980
BstDSI	CCRYGG	2 cut(s)	173, 1163
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	786, 845, 1159
BstKTI	GATC	5 cut(s)	296, 366, 661, 967, 1051
BstMAI	GTCTC	2 cut(s)	611, 690
BstMBI	GATC	5 cut(s)	293, 363, 658, 964, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 529, 532, 990
BstNI	CCWGG	2 cut(s)	145, 216
BstSCI	CCNGG	3 cut(s)	143, 214, 752
BstSFI	CTRYAG	1 cut(s)	521
BstSLI	GKGCMC	2 cut(s)	280, 445
BstV1I	GCAGC	4 cut(s)	507, 535, 538, 544
BstXI	CCANNNNNNTGG	1 cut(s)	1164
BsuRI	GGCC	2 cut(s)	589, 758
BtgI	CCRYGG	2 cut(s)	173, 1163
BtsCI	GGATG	3 cut(s)	786, 845, 1159
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	606, 756
CsiI	ACCWGGT	1 cut(s)	143
Csp6I	GTAC	6 cut(s)	70, 244, 262, 706, 713, 820
CviAII	CATG	3 cut(s)	174, 451, 603
CviQI	GTAC	6 cut(s)	70, 244, 262, 706, 713, 820
DdeI	CTNAG	3 cut(s)	557, 692, 980
DpnI	GATC	5 cut(s)	295, 365, 660, 966, 1050
DpnII	GATC	5 cut(s)	293, 363, 658, 964, 1048
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	4 cut(s)	173, 849, 958, 1077
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	756
Eco72I	CACGTG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	2 cut(s)	143, 214
EcoT14I	CCWWGG	4 cut(s)	173, 849, 958, 1077
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	4 cut(s)	173, 849, 958, 1077
FaeI	CATG	3 cut(s)	177, 454, 606
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	173, 450, 602
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	6 cut(s)	120, 388, 521, 524, 533, 552
FokI	GGATG	3 cut(s)	773, 832, 1146
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	6 cut(s)	120, 388, 521, 524, 533, 552
FspBI	CTAG	2 cut(s)	86, 830
GluI	GCNGC	6 cut(s)	120, 388, 521, 524, 533, 552
GsuI	CTGGAG	1 cut(s)	1114
HaeIII	GGCC	2 cut(s)	589, 758
HapII	CCGG	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	177, 454, 606
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	6 cut(s)	220, 353, 447, 467, 839, 894
HpaII	CCGG	1 cut(s)	753
HphI	GGTGA	5 cut(s)	204, 489, 742, 941, 974
Hpy166II	GTNNAC	4 cut(s)	207, 415, 1105, 1152
Hpy188I	TCNGA	8 cut(s)	79, 293, 298, 332, 663, 736, 899, 981
Hpy188III	TCNNGA	4 cut(s)	233, 475, 790, 1052
Hpy8I	GTNNAC	4 cut(s)	207, 415, 1105, 1152
HpyAV	CCTTC	3 cut(s)	4, 267, 1049
HpyCH4III	ACNGT	5 cut(s)	69, 409, 610, 819, 929
HpyCH4IV	ACGT	2 cut(s)	209, 439
HpyCH4V	TGCA	7 cut(s)	35, 49, 523, 780, 845, 942, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 529, 532, 990
HpyF3I	CTNAG	3 cut(s)	557, 692, 980
HpySE526I	ACGT	2 cut(s)	209, 439
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	177, 454, 606
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	5 cut(s)	293, 363, 658, 964, 1048
LmnI	GCTCC	3 cut(s)	166, 189, 1089
Lsp1109I	GCAGC	4 cut(s)	507, 535, 538, 544
LweI	GCATC	5 cut(s)	226, 374, 854, 1041, 1101
MabI	ACCWGGT	1 cut(s)	143
MaeI	CTAG	2 cut(s)	86, 830
MaeII	ACGT	2 cut(s)	209, 439
MaeIII	GTNAC	3 cut(s)	210, 748, 949
MalI	GATC	5 cut(s)	295, 365, 660, 966, 1050
MboI	GATC	5 cut(s)	293, 363, 658, 964, 1048
MboII	GAAGA	4 cut(s)	412, 415, 486, 749
MfeI	CAATTG	2 cut(s)	50, 766
MhlI	GDGCHC	3 cut(s)	280, 445, 633
MlyI	GAGTC	3 cut(s)	362, 456, 461
MnlI	CCTC	6 cut(s)	9, 125, 165, 174, 502, 940
MslI	CAYNNNNRTG	1 cut(s)	1162
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	3 cut(s)	145, 216, 754
MunI	CAATTG	2 cut(s)	50, 766
MvaI	CCWGG	2 cut(s)	145, 216
MwoI	GCNNNNNNNGC	4 cut(s)	102, 529, 532, 990
NciI	CCSGG	1 cut(s)	754
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	5 cut(s)	293, 363, 658, 964, 1048
NlaIII	CATG	3 cut(s)	177, 454, 606
NlaIV	GGNNCC	2 cut(s)	279, 757
NmuCI	GTSAC	2 cut(s)	210, 748
NspV	TTCGAA	2 cut(s)	271, 868
OliI	CACNNNNGTG	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	2 cut(s)	543, 1121
PfeI	GAWTC	3 cut(s)	220, 839, 894
PflFI	GACNNNGTC	1 cut(s)	746
PkrI	GCNGC	6 cut(s)	121, 389, 522, 525, 534, 553
PleI	GAGTC	3 cut(s)	361, 455, 461
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	3 cut(s)	361, 455, 461
Ppu21I	YACGTR	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	143, 214
PspCI	CACGTG	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	143, 214
PspN4I	GGNNCC	2 cut(s)	279, 757
PspPI	GGNCC	2 cut(s)	606, 756
PstI	CTGCAG	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	746
RsaI	GTAC	6 cut(s)	71, 245, 263, 707, 714, 821
RsaNI	GTAC	6 cut(s)	70, 244, 262, 706, 713, 820
RseI	CAYNNNNRTG	1 cut(s)	1162
SatI	GCNGC	6 cut(s)	120, 388, 521, 524, 533, 552
Sau3AI	GATC	5 cut(s)	293, 363, 658, 964, 1048
Sau96I	GGNCC	2 cut(s)	606, 756
ScaI	AGTACT	2 cut(s)	263, 707
SchI	GAGTC	3 cut(s)	362, 456, 461
ScrFI	CCNGG	3 cut(s)	145, 216, 754
SduI	GDGCHC	3 cut(s)	280, 445, 633
SexAI	ACCWGGT	1 cut(s)	143
SfaNI	GCATC	5 cut(s)	226, 374, 854, 1041, 1101
SfcI	CTRYAG	1 cut(s)	521
SfuI	TTCGAA	2 cut(s)	271, 868
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	1162
SsiI	CCGC	2 cut(s)	120, 388
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	86, 830
StyD4I	CCNGG	3 cut(s)	143, 214, 752
StyI	CCWWGG	4 cut(s)	173, 849, 958, 1077
TaaI	ACNGT	5 cut(s)	69, 409, 610, 819, 929
TaiI	ACGT	2 cut(s)	212, 442
TaqI	TCGA	8 cut(s)	234, 249, 271, 351, 633, 812, 868, 967
TatI	WGTACW	5 cut(s)	69, 243, 261, 705, 712
TauI	GCSGC	2 cut(s)	122, 390
TfiI	GAWTC	3 cut(s)	220, 839, 894
TseFI	GTSAC	2 cut(s)	210, 748
TseI	GCWGC	4 cut(s)	520, 523, 532, 551
Tsp45I	GTSAC	2 cut(s)	210, 748
TspDTI	ATGAA	2 cut(s)	494, 850
TspGWI	ACGGA	2 cut(s)	1130, 1152
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	606
XagI	CCTNNNNNAGG	1 cut(s)	271
XapI	RAATTY	3 cut(s)	719, 793, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XspI	CTAG	2 cut(s)	86, 830
ZraI	GACGTC	1 cut(s)	210
ZrmI	AGTACT	2 cut(s)	263, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.