Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007547

Physical Location & Seq

Genomic Coordinates Reverse (-)

81935602 .. 81937811

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGAAGACCAAAATCTCTGAAATCCCGATGATTACTTACCAGTCGGATATGATGGATGAGTTGAAGGCGGCACATGTTCTTATGGGTATTGGTGCTCCGGAGGCGGCGGACGGTGTTCCTGCAGCTGCGGCGGCGGAGGTTGCTTATGCCTTGTTCACTGCTTTTATTGCTTCCTTGCAAAATTTGAAATTTTTGTTTAGTTTCGTGAGGGAAAGCAGATGTGGTGGTGGTGATGAAGAGTCACGCCCAAGTTCTAAGGCTGATGAAATTAATATCCCCCCTTGGACACTAATAATCCCGAAGTTGGAAGATCACACTAATCTTCTACAGCTCCCTGACGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACCTTGATAAAGTGAGTGCATCTACAGCAGCCATGTTAGTGCCAGTGCTCGGTGGTACTATGAGCCTTTTGAAAAAAAAGTTACAAAAGGAGGTTGCTGGATATGATGAGGACGACGACGATGACAACGAGGAAAAGGATGTTGGCAATCAACATGAAATGAATCAGGAGGAGGGTGAGCAAAGAAAGGAGAATAAACATAAGGAGGATGTTATTGTTTTAAGTGATGACGATGAAGATGACGATGAAGATGACGAGGCTGGGAAGGTCTATTCAAAGCCGCTGTTGATGAAAATGAAGGTTGATGACCTTAGACATTTAGCTGTTAAGCAGCGATTGAAAAATAGCTCCTGGGATTCAAAGGCGAAGCTGGTTGATCGTATTGCAAAGGCACTAGGTGTTTGTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.83

Weight (kDa)

4.62

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174141 RchiOBHm_Chr2g0174151 RchiOBHm_Chr5g0012111
rosa_laevigata	RLG00000022250 RLG00000022251
rosa_multiflora	Rmu_sc0003188.1_g000038 Rmu_sc0038402.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078420
rosa_rugosa	Rorug02G0575000 Rorug02G0575100 Rorug02G0575100 Rorug02G0575300 Rorug02G0575400
rosa_samantha	Rh2AG654600 Rh2AG654700 Rh2AG654800 Rh2BG665800 Rh2BG666000 Rh2CG630000 Rh2CG630100 Rh2DG680400 Rh2DG680500 Rh7BG432400
rosa_wichuraiana	Rw2G053730 Rw2G053740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	7 cut(s)	71, 107, 110, 131, 134, 137, 653
AcsI	RAATTY	2 cut(s)	184, 191
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	307, 422
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	67, 190, 445, 648, 712, 732
AjnI	CCWGG	1 cut(s)	722
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	6 cut(s)	128, 334, 371, 695, 720, 742
AluI	AGCT	6 cut(s)	128, 334, 371, 695, 720, 742
Alw21I	GWGCWC	2 cut(s)	100, 423
Aor13HI	TCCGGA	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	125, 128, 401, 703
ApoI	RAATTY	2 cut(s)	184, 191
AseI	ATTAAT	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	16, 245, 560
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	100, 423
BbvI	GCAGC	4 cut(s)	115, 137, 413, 715
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	724
BfaI	CTAG	1 cut(s)	767
BfmI	CTRYAG	3 cut(s)	123, 329, 396
BisI	GCNGC	9 cut(s)	72, 108, 126, 129, 132, 135, 402, 653, 704
BlsI	GCNGC	9 cut(s)	73, 109, 127, 130, 133, 136, 403, 654, 705
Bme1390I	CCNGG	1 cut(s)	724
BmrFI	CCNGG	1 cut(s)	724
BmsI	GCATC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	284, 723
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 422
Bse1I	ACTGG	2 cut(s)	43, 416
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	284, 723
BseGI	GGATG	3 cut(s)	64, 517, 586
BseLI	CCNNNNNNNGG	2 cut(s)	307, 422
BseNI	ACTGG	2 cut(s)	43, 416
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	4 cut(s)	115, 137, 413, 715
BseYI	CCCAGC	1 cut(s)	632
BsiHKAI	GWGCWC	2 cut(s)	100, 423
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	307, 422
Bsp1286I	GDGCHC	2 cut(s)	100, 423
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	313, 343, 748
BspACI	CCGC	7 cut(s)	71, 107, 110, 131, 134, 137, 653
BspEI	TCCGGA	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	43, 416
BssECI	CCNNGG	2 cut(s)	284, 723
BssMI	GATC	3 cut(s)	313, 343, 748
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	258, 683
BstF5I	GGATG	3 cut(s)	64, 517, 586
BstKTI	GATC	3 cut(s)	316, 346, 751
BstMBI	GATC	3 cut(s)	313, 343, 748
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 131, 134, 143, 170, 398
BstNI	CCWGG	1 cut(s)	724
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	722
BstSFI	CTRYAG	3 cut(s)	123, 329, 396
BstV1I	GCAGC	4 cut(s)	115, 137, 413, 715
BstV2I	GAAGAC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	64, 517, 586
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 423
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	3 cut(s)	77, 406, 527
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	258, 683
DpnI	GATC	3 cut(s)	315, 345, 750
DpnII	GATC	3 cut(s)	313, 343, 748
DraIII	CACNNNGTG	1 cut(s)	770
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	2 cut(s)	125, 152
Eco130I	CCWWGG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	3 cut(s)	80, 409, 530
FaiI	YATR	9 cut(s)	53, 78, 86, 150, 407, 434, 477, 528, 573
FatI	CATG	3 cut(s)	76, 405, 526
Fnu4HI	GCNGC	9 cut(s)	72, 108, 126, 129, 132, 135, 402, 653, 704
FokI	GGATG	3 cut(s)	71, 524, 593
Fsp4HI	GCNGC	9 cut(s)	72, 108, 126, 129, 132, 135, 402, 653, 704
FspBI	CTAG	1 cut(s)	767
GluI	GCNGC	9 cut(s)	72, 108, 126, 129, 132, 135, 402, 653, 704
GsaI	CCCAGC	1 cut(s)	636
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	80, 409, 530
HinfI	GANTC	3 cut(s)	242, 535, 728
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	16, 245, 560
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	22, 49
Hpy188III	TCNNGA	5 cut(s)	28, 101, 208, 301, 539
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	491, 494
HpyAV	CCTTC	3 cut(s)	61, 631, 664
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	125, 181, 392, 758
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 131, 134, 143, 170, 398
HpyF3I	CTNAG	2 cut(s)	258, 683
Hsp92II	CATG	3 cut(s)	80, 409, 530
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	313, 343, 748
LmnI	GCTCC	3 cut(s)	103, 339, 725
Lsp1109I	GCAGC	4 cut(s)	115, 137, 413, 715
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	767
MaeIII	GTNAC	2 cut(s)	243, 453
MalI	GATC	3 cut(s)	315, 345, 750
MboI	GATC	3 cut(s)	313, 343, 748
MboII	GAAGA	6 cut(s)	19, 251, 317, 323, 620, 632
MhlI	GDGCHC	2 cut(s)	100, 423
MluCI	AATT	3 cut(s)	184, 191, 270
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	27, 288
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	3 cut(s)	273, 593, 699
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	3 cut(s)	128, 371, 655
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	724
MwoI	GCNNNNNNNGC	6 cut(s)	104, 131, 134, 143, 170, 398
NdeII	GATC	3 cut(s)	313, 343, 748
NlaIII	CATG	3 cut(s)	80, 409, 530
NmuCI	GTSAC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	80
PciI	ACATGT	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	535, 728
PkrI	GCNGC	9 cut(s)	73, 109, 127, 130, 133, 136, 403, 654, 705
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	722
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	722
PstI	CTGCAG	1 cut(s)	127
PvuII	CAGCTG	2 cut(s)	128, 371
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	273, 593, 699
SatI	GCNGC	9 cut(s)	72, 108, 126, 129, 132, 135, 402, 653, 704
Sau3AI	GATC	3 cut(s)	313, 343, 748
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	724
SduI	GDGCHC	2 cut(s)	100, 423
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	3 cut(s)	123, 329, 396
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	184, 191, 270
SsiI	CCGC	7 cut(s)	71, 107, 110, 131, 134, 137, 653
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	722
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	361
TasI	AATT	3 cut(s)	184, 191, 270
TauI	GCSGC	5 cut(s)	74, 110, 134, 137, 655
TfiI	GAWTC	2 cut(s)	535, 728
Tru1I	TTAA	3 cut(s)	273, 593, 699
Tru9I	TTAA	3 cut(s)	273, 593, 699
TscAI	CASTG	2 cut(s)	166, 423
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	4 cut(s)	125, 128, 401, 703
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	8 cut(s)	252, 282, 543, 548, 621, 633, 677, 683
TspRI	CASTG	2 cut(s)	166, 423
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	184, 191
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.