Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Forward (+)

4999605 .. 5004502

Gene Structure 4898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGGCACAATCTCCGTACTCTCTACTCCTCCTCAGGCGTTTGATCTCTCGCTATTCCTTAAACCCCAAACCCTCTCCGCCTCTCTTCTCTCTCCTAAAACCCTTCTCTACCTCCTCCTCGAACCCAAACCCTTCCTCTCTCTCCGCTCGCCTCAGCTTCGTCTTCGACCAAATCGACGCCATTGAGAAAGACCGCTCCGACAAGGACCAAACCCTCCAAAAGATCCGGGCTTGGCGCGAATCCAAAAACCCCCAATCCCCAGAATTAGGGTTCGAAAATGCCCGCCTCGATTCGATTGGTCCCTCCGCCGCCGCCGCCGACGTGGAACCGGAGAAACCCGCGGCGGCGGTGAAGAAGGAGGTGGAGGTGGTGCACCCGTGGCCGGAGTGGATTGAACTGATGGAGAGGCTGGTGCAGCAGAACTACTTTGACCATAGGAGGAAGGACGAGGACAGAATGGTCCAAGAAATGGGCTTTGATGCCTCTGAAATCCATGATGATTCCCAGGGTTTGGATTTCAGGGATTTCAAGGCTGTTCATACTGCCTGTCTTAATTTCGGGAAGGACCGGTTTGATATTTTCAGGTCCTTGTCGAGACAGGATATTCAAATTTTGGTGGGTTTTGGATGCCCGAGTACGGACAAGAAGGTGGTTTTCTCTTCGAAGCTGTTAAGGAAGCACACCCACCTCGATGAAGGAGATGTATGTAGTTCCTGCAGTTTAAGGAATTCCTGTGAAAGAGCATATTTGATTACTAACAAAGAGGATGAGGCGCGGACTATTGATATAATGCGTGTTTTATTGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAGGTCACTTCTAAAACAAAAAACCATTAAAACTGTAGTCCGTAAGTTGCTTCATCAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCGGTGATTAAAAAGCCACCCCCAAAAGTGAAGCAGCCTCCTCCCCCTCCAAGAAAACGAGTTGGACGTGATGACATTGAGATGAAAAAAGGGGACTGGCTATGCTCTAAGTGCGACTTCATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTGTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAGTGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGATGAATATATTGAGAACAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCTGAGGCCTCTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCAGATGGGGCAGATGTTGCTGCTTTTGAGTATGCGGATCCAGTAATGAGTGAAGGGTCTCTCGACACCCAGGCTCAAGGGGAAAATTTTCGACGTCCTGAATACGATTTCAGTAAAAATAGGAGAGTGTCAAGGGTTGACAATGAAGAATATTCTGATGCTGACACTATTAAGCCAGGCAGAGGGTTTGATGATTTTGATGATGAAGATGATGATATTGACAATTACGAGTTGGACACTCGTCCTAAAGATACAGCACAGAACACTTCTTCAATTGATTTTTCTGAATTGGAGGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATTTGCATGCTCGCAAAACACTCTCTCCATCTTACAATAAGCCATCTAAGTATATGCATCGACGGGCAGCATTATCTGTCTCAGATGATGATGAAATTGATTTAAATTCTGACAAAGACCTTTCAGTTCTTCGCAACCGAAGATCAAGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGGTAGAAACTCAACTAGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCTACTCTGATGTGGATGATGATCTAGATCAAAATATTAGATCCAGACAAGGTAAACTGAACAAATTGAGTTCTGGGAGAAAAGACTTTCAGAGGAGAAGAAATTTTGATAGTGAAGATGATTCAATGTCTGGTTCAGATTCAGAGAATGACGATTTTCATTCTCATAAAAATAGGCACAGAGGAAATAAACCAAACAGTTTCAAAGGTGCACAATTTAAATCCAGCGGAATGAAGAGTGGCAGGAAGAACTCTTTCAGCGATGATGACTTTGATAGACCAACCCGAGGGTCTCGTGATAACAGAGGATTTCGAGGGAATGATTTTGATGGCAAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAAGAGAAGCATTTGGAAATGGTGGTAGGAGAAACTCTTTTGGTGACGATTTTGATAGATCTAAACAAGTATCTCGTGGTAATAACAGAGGATTTCGGGAAAACAACTTTGATGGGCAGAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAAGGGACCTAAAAGAGAAGGATTTGGAAAGCAGCAGCGTGAAAGATTTAATAATGATTGGGACAAGGACAGGGACTTTGGTAACTTTAGCAATAGTCGACGCGTTATTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

853

Amino Acids

97.86

Weight (kDa)

8.21

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	344 - 372	4.1e-08	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
AatII	GACGTC	1 cut(s)	1435
AccB7I	CCANNNNNTGG	2 cut(s)	469, 511
AccBSI	CCGCTC	2 cut(s)	146, 195
AccI	GTMKAC	2 cut(s)	937, 2542
AccII	CGCG	4 cut(s)	237, 341, 775, 2547
AclWI	GGATC	8 cut(s)	217, 812, 838, 923, 1370, 1383, 1642, 1944
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	8 cut(s)	609, 727, 1069, 1315, 1423, 1774, 2011, 2275
AcyI	GRCGYC	2 cut(s)	177, 1432
AfaI	GTAC	3 cut(s)	17, 637, 837
AfiI	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
AflIII	ACRYGT	1 cut(s)	2545
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	7 cut(s)	395, 529, 608, 1611, 2034, 2113, 2555
AhdI	GACNNNNNGTC	1 cut(s)	1336
AhlI	ACTAGT	1 cut(s)	1862
AjiI	CACGTC	2 cut(s)	322, 1013
AjnI	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
AluBI	AGCT	6 cut(s)	156, 667, 910, 1126, 1884, 1904
AluI	AGCT	6 cut(s)	156, 667, 910, 1126, 1884, 1904
Alw21I	GWGCWC	2 cut(s)	375, 2122
Alw26I	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
Alw44I	GTGCAC	2 cut(s)	371, 2118
AlwI	GGATC	8 cut(s)	217, 812, 838, 923, 1370, 1383, 1642, 1944
Ama87I	CYCGRG	2 cut(s)	631, 2193
AoxI	GGCC	5 cut(s)	380, 1258, 1292, 1299, 2285
ApaLI	GTGCAC	2 cut(s)	371, 2118
ApeKI	GCWGC	7 cut(s)	415, 979, 1126, 1358, 1736, 2476, 2479
ApoI	RAATTY	8 cut(s)	609, 727, 1069, 1315, 1423, 1774, 2011, 2275
ArsI	GACNNNNNNTTYG	4 cut(s)	1801, 1833, 2504, 2536
AsiGI	ACCGGT	1 cut(s)	567
Asp700I	GAANNNNTTC	2 cut(s)	1425, 2162
AspA2I	CCTAGG	1 cut(s)	1262
AspLEI	GCGC	3 cut(s)	237, 775, 1212
AspS9I	GGNCC	9 cut(s)	205, 299, 460, 565, 585, 1259, 1658, 2285, 2450
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	361, 961, 2345
AsuII	TTCGAA	2 cut(s)	273, 662
AvaI	CYCGRG	2 cut(s)	631, 2193
AvaII	GGWCC	7 cut(s)	205, 299, 460, 565, 585, 1658, 2450
AvrII	CCTAGG	1 cut(s)	1262
AxyI	CCTNAGG	2 cut(s)	32, 1296
BaeGI	GKGCMC	3 cut(s)	375, 1151, 2122
BamHI	GGATCC	1 cut(s)	1375
BanII	GRGCYC	1 cut(s)	1911
BauI	CACGAG	2 cut(s)	2202, 2364
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	375, 2122
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	7 cut(s)	427, 991, 1113, 1345, 1748, 2488, 2491
BccI	CCATC	8 cut(s)	394, 1267, 1337, 1705, 1720, 1876, 2231, 2396
BciT130I	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
BcuI	ACTAGT	1 cut(s)	1862
BfaI	CTAG	6 cut(s)	933, 1263, 1269, 1833, 1863, 1934
BfmI	CTRYAG	3 cut(s)	715, 876, 1094
BfoI	RGCGCY	1 cut(s)	1213
BglII	AGATCT	1 cut(s)	2348
BlnI	CCTAGG	1 cut(s)	1262
Bme1390I	CCNGG	6 cut(s)	227, 506, 1134, 1312, 1409, 1515
Bme18I	GGWCC	7 cut(s)	205, 299, 460, 565, 585, 1658, 2450
BmeRI	GACNNNNNGTC	1 cut(s)	1336
BmeT110I	CYCGRG	2 cut(s)	631, 2193
BmgBI	CACGTC	2 cut(s)	322, 1013
BmgT120I	GGNCC	9 cut(s)	205, 299, 460, 565, 585, 1259, 1658, 2285, 2450
BmiI	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
BmrFI	CCNGG	6 cut(s)	227, 506, 1134, 1312, 1409, 1515
BmsI	GCATC	5 cut(s)	469, 617, 1093, 1486, 1735
BoxI	GACNNNNGTC	1 cut(s)	1578
BpiI	GAAGAC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	2 cut(s)	273, 662
BpuEI	CTTGAG	1 cut(s)	1398
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	3 cut(s)	1639, 1929, 1935
BsaHI	GRCGYC	2 cut(s)	177, 1432
BsaI	GGTCTC	2 cut(s)	1401, 2205
BsaJI	CCNNGG	8 cut(s)	339, 377, 504, 505, 1262, 1407, 2194, 2422
BsaWI	WCCGGW	3 cut(s)	328, 567, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	1678, 1708
Bsc4I	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	2 cut(s)	1046, 1379
Bse21I	CCTNAGG	2 cut(s)	32, 1296
Bse8I	GATNNNNATC	3 cut(s)	1639, 1929, 1935
BseBI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BseDI	CCNNGG	8 cut(s)	339, 377, 504, 505, 1262, 1407, 2194, 2422
BseGI	GGATG	4 cut(s)	632, 772, 1278, 1930
BseJI	GATNNNNATC	3 cut(s)	1639, 1929, 1935
BseLI	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
BseMII	CTCAG	5 cut(s)	46, 166, 902, 1287, 1764
BseNI	ACTGG	2 cut(s)	1046, 1379
BseRI	GAGGAG	7 cut(s)	17, 20, 103, 106, 933, 975, 2017
BseSI	GKGCMC	3 cut(s)	375, 1151, 2122
BseXI	GCAGC	7 cut(s)	427, 991, 1113, 1345, 1748, 2488, 2491
BseYI	CCCAGC	1 cut(s)	1904
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	4 cut(s)	237, 341, 775, 2547
BshFI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
BshTI	ACCGGT	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	375, 2122
BsiHKCI	CYCGRG	2 cut(s)	631, 2193
BsiSI	CCGG	5 cut(s)	226, 329, 383, 568, 947
BslFI	GGGAC	5 cut(s)	285, 1052, 2463, 2519, 2531
BslI	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
BsmAI	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
BsmFI	GGGAC	5 cut(s)	285, 1052, 2463, 2519, 2531
BsnI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
Bso31I	GGTCTC	2 cut(s)	1401, 2205
BsoBI	CYCGRG	2 cut(s)	631, 2193
Bsp119I	TTCGAA	2 cut(s)	273, 662
Bsp1286I	GDGCHC	4 cut(s)	375, 1151, 1911, 2122
BspANI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
BspCNI	CTCAG	5 cut(s)	45, 165, 903, 1288, 1763
BspFNI	CGCG	4 cut(s)	237, 341, 775, 2547
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
BspMAI	CTGCAG	2 cut(s)	719, 1098
BspPI	GGATC	8 cut(s)	217, 812, 838, 923, 1370, 1383, 1642, 1944
BspT104I	TTCGAA	2 cut(s)	273, 662
BspTNI	GGTCTC	2 cut(s)	1401, 2205
BsrBI	CCGCTC	2 cut(s)	146, 195
BsrFI	RCCGGY	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	1046, 1379
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	8 cut(s)	339, 377, 504, 505, 1262, 1407, 2194, 2422
BssNI	GRCGYC	2 cut(s)	177, 1432
BssSI	CACGAG	2 cut(s)	2202, 2364
BssT1I	CCWWGG	1 cut(s)	1262
Bst2BI	CACGAG	2 cut(s)	2202, 2364
Bst2UI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
Bst4CI	ACNGT	4 cut(s)	877, 1652, 2108, 2423
Bst6I	CTCTTC	3 cut(s)	89, 664, 2138
BstACI	GRCGYC	2 cut(s)	177, 1432
BstAPI	GCANNNNNTGC	1 cut(s)	1355
BstBI	TTCGAA	2 cut(s)	273, 662
BstC8I	GCNNGC	6 cut(s)	148, 283, 1094, 1208, 1677, 1681
BstDEI	CTNAG	7 cut(s)	32, 152, 911, 1053, 1296, 1716, 1750
BstDSI	CCRYGG	3 cut(s)	339, 377, 2422
BstF5I	GGATG	4 cut(s)	632, 772, 1278, 1930
BstFNI	CGCG	4 cut(s)	237, 341, 775, 2547
BstH2I	RGCGCY	1 cut(s)	1213
BstHHI	GCGC	3 cut(s)	237, 775, 1212
BstMAI	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
BstMWI	GCNNNNNNNGC	8 cut(s)	314, 379, 415, 1056, 1155, 1249, 1307, 1355
BstNI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BstNSI	RCATGY	3 cut(s)	1191, 1243, 1679
BstPAI	GACNNNNGTC	1 cut(s)	1578
BstSCI	CCNGG	6 cut(s)	225, 504, 1132, 1310, 1407, 1513
BstSFI	CTRYAG	3 cut(s)	715, 876, 1094
BstSLI	GKGCMC	3 cut(s)	375, 1151, 2122
BstUI	CGCG	4 cut(s)	237, 341, 775, 2547
BstV1I	GCAGC	7 cut(s)	427, 991, 1113, 1345, 1748, 2488, 2491
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
BstXI	CCANNNNNNTGG	1 cut(s)	1140
BstYI	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
Bsu36I	CCTNAGG	2 cut(s)	32, 1296
BsuRI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
BtgI	CCRYGG	3 cut(s)	339, 377, 2422
BtgZI	GCGATG	1 cut(s)	2184
BtrI	CACGTC	2 cut(s)	322, 1013
BtsCI	GGATG	4 cut(s)	632, 772, 1278, 1930
BtsI	GCAGTG	1 cut(s)	1103
BtsIMutI	CAGTG	2 cut(s)	1103, 1657
Cac8I	GCNNGC	6 cut(s)	148, 283, 1094, 1208, 1677, 1681
CciI	TCATGA	1 cut(s)	1065
CfoI	GCGC	3 cut(s)	237, 775, 1212
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	9 cut(s)	205, 299, 460, 565, 585, 1259, 1658, 2285, 2450
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	3 cut(s)	185, 1100, 2553
Csp6I	GTAC	3 cut(s)	16, 636, 836
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	6 cut(s)	494, 1066, 1188, 1240, 1676, 1820
CviQI	GTAC	3 cut(s)	16, 636, 836
DdeI	CTNAG	7 cut(s)	32, 152, 911, 1053, 1296, 1716, 1750
DraI	TTTAAA	3 cut(s)	1167, 1773, 2128
DrdI	GACNNNNNNGTC	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	1336
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	3 cut(s)	89, 664, 2138
Eam1105I	GACNNNNNGTC	1 cut(s)	1336
EarI	CTCTTC	3 cut(s)	89, 664, 2138
EciI	GGCGGA	2 cut(s)	66, 295
Eco130I	CCWWGG	1 cut(s)	1262
Eco147I	AGGCCT	1 cut(s)	1301
Eco24I	GRGCYC	1 cut(s)	1911
Eco31I	GGTCTC	2 cut(s)	1401, 2205
Eco47I	GGWCC	7 cut(s)	205, 299, 460, 565, 585, 1658, 2450
Eco81I	CCTNAGG	2 cut(s)	32, 1296
Eco88I	CYCGRG	2 cut(s)	631, 2193
EcoO109I	RGGNCCY	3 cut(s)	585, 2285, 2450
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
EcoT14I	CCWWGG	1 cut(s)	1262
EcoT22I	ATGCAT	1 cut(s)	1728
EcoT38I	GRGCYC	1 cut(s)	1911
ErhI	CCWWGG	1 cut(s)	1262
FaeI	CATG	6 cut(s)	497, 1069, 1191, 1243, 1679, 1823
FalI	AAGNNNNNCTT	2 cut(s)	1046, 1078
FaqI	GGGAC	5 cut(s)	285, 1052, 2463, 2519, 2531
FatI	CATG	6 cut(s)	493, 1065, 1187, 1239, 1675, 1819
FauI	CCCGC	2 cut(s)	290, 346
FblI	GTMKAC	2 cut(s)	937, 2542
FokI	GGATG	4 cut(s)	639, 779, 1285, 1937
FriOI	GRGCYC	1 cut(s)	1911
FspBI	CTAG	6 cut(s)	933, 1263, 1269, 1833, 1863, 1934
GlaI	GCGC	3 cut(s)	236, 774, 1211
GsaI	CCCAGC	1 cut(s)	1908
HaeII	RGCGCY	1 cut(s)	1213
HaeIII	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
HapII	CCGG	5 cut(s)	226, 329, 383, 568, 947
HgaI	GACGC	3 cut(s)	185, 1100, 2553
HhaI	GCGC	3 cut(s)	237, 775, 1212
Hin1I	GRCGYC	2 cut(s)	177, 1432
Hin1II	CATG	6 cut(s)	497, 1069, 1191, 1243, 1679, 1823
Hin6I	GCGC	3 cut(s)	235, 773, 1210
HinP1I	GCGC	3 cut(s)	235, 773, 1210
HincII	GTYRAC	2 cut(s)	1477, 2543
HindII	GTYRAC	2 cut(s)	1477, 2543
HindIII	AAGCTT	1 cut(s)	1882
HinfI	GANTC	9 cut(s)	239, 290, 500, 1288, 1337, 1640, 1829, 2030, 2048
HpaII	CCGG	5 cut(s)	226, 329, 383, 568, 947
HphI	GGTGA	3 cut(s)	361, 961, 2345
Hpy166II	GTNNAC	6 cut(s)	373, 938, 1477, 1964, 2120, 2543
Hpy8I	GTNNAC	6 cut(s)	373, 938, 1477, 1964, 2120, 2543
Hpy99I	CGWCG	5 cut(s)	179, 323, 1434, 1734, 2547
HpyCH4III	ACNGT	4 cut(s)	877, 1652, 2108, 2423
HpyCH4IV	ACGT	4 cut(s)	321, 1012, 1255, 1432
HpyF10VI	GCNNNNNNNGC	8 cut(s)	314, 379, 415, 1056, 1155, 1249, 1307, 1355
HpyF3I	CTNAG	7 cut(s)	32, 152, 911, 1053, 1296, 1716, 1750
HpySE526I	ACGT	4 cut(s)	321, 1012, 1255, 1432
Hsp92I	GRCGYC	2 cut(s)	177, 1432
Hsp92II	CATG	6 cut(s)	497, 1069, 1191, 1243, 1679, 1823
HspAI	GCGC	3 cut(s)	235, 773, 1210
KspI	CCGCGG	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	7 cut(s)	427, 991, 1113, 1345, 1748, 2488, 2491
LweI	GCATC	5 cut(s)	469, 617, 1093, 1486, 1735
MaeI	CTAG	6 cut(s)	933, 1263, 1269, 1833, 1863, 1934
MaeII	ACGT	4 cut(s)	321, 1012, 1255, 1432
MaeIII	GTNAC	5 cut(s)	846, 2252, 2333, 2417, 2525
MbiI	CCGCTC	2 cut(s)	146, 195
MfeI	CAATTG	1 cut(s)	1611
MflI	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
MhlI	GDGCHC	4 cut(s)	375, 1151, 1911, 2122
MluI	ACGCGT	1 cut(s)	2545
MlyI	GAGTC	1 cut(s)	1346
MmeI	TCCRAC	3 cut(s)	222, 988, 1551
Mph1103I	ATGCAT	1 cut(s)	1728
MroXI	GAANNNNTTC	2 cut(s)	1425, 2162
MslI	CAYNNNNRTG	2 cut(s)	690, 1025
MspA1I	CMGCKG	3 cut(s)	341, 1126, 2136
MspI	CCGG	5 cut(s)	226, 329, 383, 568, 947
MspR9I	CCNGG	6 cut(s)	227, 506, 1134, 1312, 1409, 1515
MunI	CAATTG	1 cut(s)	1611
MvaI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
MvnI	CGCG	4 cut(s)	237, 341, 775, 2547
MwoI	GCNNNNNNNGC	8 cut(s)	314, 379, 415, 1056, 1155, 1249, 1307, 1355
NciI	CCSGG	1 cut(s)	227
NlaIII	CATG	6 cut(s)	497, 1069, 1191, 1243, 1679, 1823
NlaIV	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
NmuCI	GTSAC	2 cut(s)	846, 2333
NsiI	ATGCAT	1 cut(s)	1728
NspI	RCATGY	3 cut(s)	1191, 1243, 1679
NspV	TTCGAA	2 cut(s)	273, 662
PaeI	GCATGC	1 cut(s)	1679
PagI	TCATGA	1 cut(s)	1065
PasI	CCCWGGG	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	1301
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 1009
PdmI	GAANNNNTTC	2 cut(s)	1425, 2162
PfeI	GAWTC	8 cut(s)	239, 290, 500, 1288, 1640, 1829, 2030, 2048
PflMI	CCANNNNNTGG	2 cut(s)	469, 511
PfoI	TCCNGGA	1 cut(s)	1132
PinAI	ACCGGT	1 cut(s)	567
PleI	GAGTC	1 cut(s)	1345
PpsI	GAGTC	1 cut(s)	1345
PpuMI	RGGWCCY	2 cut(s)	585, 2450
PshAI	GACNNNNGTC	1 cut(s)	1578
Psp5II	RGGWCCY	2 cut(s)	585, 2450
Psp6I	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
PspFI	CCCAGC	1 cut(s)	1904
PspGI	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
PspN4I	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
PspPI	GGNCC	9 cut(s)	205, 299, 460, 565, 585, 1259, 1658, 2285, 2450
PspPPI	RGGWCCY	2 cut(s)	585, 2450
PstI	CTGCAG	2 cut(s)	719, 1098
PsuI	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
PvuII	CAGCTG	1 cut(s)	1126
RsaI	GTAC	3 cut(s)	17, 637, 837
RsaNI	GTAC	3 cut(s)	16, 636, 836
RseI	CAYNNNNRTG	2 cut(s)	690, 1025
SacII	CCGCGG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	2541
Sau96I	GGNCC	9 cut(s)	205, 299, 460, 565, 585, 1259, 1658, 2285, 2450
SchI	GAGTC	1 cut(s)	1346
ScrFI	CCNGG	6 cut(s)	227, 506, 1134, 1312, 1409, 1515
SduI	GDGCHC	4 cut(s)	375, 1151, 1911, 2122
SfaNI	GCATC	5 cut(s)	469, 617, 1093, 1486, 1735
SfcI	CTRYAG	3 cut(s)	715, 876, 1094
Sfr303I	CCGCGG	1 cut(s)	342
SfuI	TTCGAA	2 cut(s)	273, 662
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	7 cut(s)	205, 299, 460, 565, 585, 1658, 2450
SmiI	ATTTAAAT	2 cut(s)	1773, 2128
SmiMI	CAYNNNNRTG	2 cut(s)	690, 1025
SmlI	CTYRAG	1 cut(s)	1413
SmoI	CTYRAG	1 cut(s)	1413
SpeI	ACTAGT	1 cut(s)	1862
SphI	GCATGC	1 cut(s)	1679
SseBI	AGGCCT	1 cut(s)	1301
SspI	AATATT	2 cut(s)	1490, 1945
SspMI	CTAG	6 cut(s)	933, 1263, 1269, 1833, 1863, 1934
StuI	AGGCCT	1 cut(s)	1301
StyD4I	CCNGG	6 cut(s)	225, 504, 1132, 1310, 1407, 1513
StyI	CCWWGG	1 cut(s)	1262
SwaI	ATTTAAAT	2 cut(s)	1773, 2128
TaaI	ACNGT	4 cut(s)	877, 1652, 2108, 2423
TaiI	ACGT	4 cut(s)	324, 1015, 1258, 1435
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	5 cut(s)	311, 314, 317, 344, 347
TfiI	GAWTC	8 cut(s)	239, 290, 500, 1288, 1640, 1829, 2030, 2048
TscAI	CASTG	2 cut(s)	1103, 1657
TseFI	GTSAC	2 cut(s)	846, 2333
TseI	GCWGC	7 cut(s)	415, 979, 1126, 1358, 1736, 2476, 2479
Tsp45I	GTSAC	2 cut(s)	846, 2333
TspGWI	ACGGA	2 cut(s)	653, 872
TspRI	CASTG	2 cut(s)	1103, 1657
Van91I	CCANNNNNTGG	2 cut(s)	469, 511
VneI	GTGCAC	2 cut(s)	371, 2118
VpaK11BI	GGWCC	7 cut(s)	205, 299, 460, 565, 585, 1658, 2450
XapI	RAATTY	8 cut(s)	609, 727, 1069, 1315, 1423, 1774, 2011, 2275
XbaI	TCTAGA	2 cut(s)	1832, 1933
XceI	RCATGY	3 cut(s)	1191, 1243, 1679
XmaJI	CCTAGG	1 cut(s)	1262
XmiI	GTMKAC	2 cut(s)	937, 2542
XmnI	GAANNNNTTC	2 cut(s)	1425, 2162
XspI	CTAG	6 cut(s)	933, 1263, 1269, 1833, 1863, 1934
ZraI	GACGTC	1 cut(s)	1433
Zsp2I	ATGCAT	1 cut(s)	1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.