Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Forward (+)

4522031 .. 4526712

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGCACAATCTCCGTACTCTCTCCTCAGGCGTTTGATCTCTCGCTATTCCTTAAACCCAAAACCCTCTCCGCCTCTCTTCTCTCTCCTAAAACCCTTCTCTACCTCCTCCTCGAACCCAAACCCTTCCTCTCTCTCCGCTCGCCTCAGCTTCGTCTTCGACCAAATCGACGCCATTGAGAAAGACCGCTCCGACAAGGACCAAACCCTCCAAAAGATCCGAGCTTGGCGCGAATCCAAAAACCCCCAATCCCCAGAATTAGGGTTCGAAAATGCCCGCCTCGATTCGATTGGTCCCTCCGCCGACGTGGGACCGGAGAAGCCCGCGGCGGCGGTGAAGAAGGAGGTGGAGGTGGTGCACCCGTGGCCGGAGTGGATTGAACTGATGGAGAGGCTGGTGCAGCAGAACTACTTTGACCATAGGAGGAAGGACGAGGACAGAATGGTCCAAGAAATGGGCTTTGATGCCTCTGAAATCCATGATGATTCCCAGGGTTTGGATTTCAGGGATTTCAAGGCTGTTCATACTGCCTGTCTTAATTTCGGGAAGGACCGGTTTGATATTTTCAGGTCCTTGTCGAGACAGGATATTCAAATTTTGGTGGGTTTTGGATGCCCGAGTACAGACAAGAAGGTGGTTTTCTCTTCGAAGCTGTTAAGGAAGCACACCCACCTTGATGAAGGAGATGTATGTAGTTCCTGCAGTTTAAGGAATTCCTGTGAAAGAGCATATCTGATTACTAACAAAGAGGATGAGGCGCGGACTATTGATATAATGCGTGTTTTATTGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAGGTCACTTCTAAAACAAAAAACCGTTAAAACTGTAGTCCGTAAGTTGCTTCATCAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCGGTGATCAAAAAGCCACCCCCAAAAGTGAAGCAGCCTCCTCCCCCTCCAAGAAAACGAGTTGGACGTGATGACATTGAGATGAAAAAAGGGGACTGGCTATGCTCCAAGTGCGACTTCATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTGTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAGTGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGATGAATATATTGAGAACAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCTGGGGCCTCTAATGCCTGGAATTTTGATTTTGACGACAATGAGTCAGATGGGGCAGATGTTGCTGCTTTTGAGTATGCGGATCCAGTAATGAGTGAAGGGTCTCTTCAGGCTCAAGGGGAAAATTTTCGACGTCCTGAATACGATTTCAGTAAAAATAGGAGAGTGTCAAGGGTTGACAATGAAGAATATTCTGATGCTGACACTATTAAGCCAGGCAGAGGGTTTGATGATTTTGATGATGAAGATGATGATATTGACAATTACGAGTTGGACACTCGTCCTAAAGATTCAGCAAAGAACACTTCTTCAATTGATTTTTCTGAATTGGAGGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATTTGCATGCTCGCAAAACACTCTCTCCATCTTACAATAAGCCATCTAAGTCCATGCATCGACGGCCAGCATTATCTGTCTCAGATGATGATGAAATTGATTTAAATTCTGACCAAGACCTTTCAGTTCTTCCCAACCGAAGATCAAGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGGTAGAAACTCAACTAGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCTACTCTGATGTGGATGATGATCTAGATCAAAATATTAGATCCAGACAAGGTAAACTGAACAAATTGAGTTCTGGGAGAAGAGACTTTCAGAGGAGAATAAATTTTGATAGTGAAGATGATTCAATGTCTGGTTCAGATTCAGAGAATGATGATTTTCATTTTCATAAAAATAGGCACAGAGGAAATAAACCAAACAGTTTCAAAGGTGCACAATTTAAATCCAGCGGAATGAAGAGTGGCAGGAAGAACTCTTTCAGCGATGATGACTTTGATAGACCAACCCGAGGGTCTCGTGATAACAGAGGATTTCGAGGGAATGATTTTGATGGCAAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAAGAGAAGCATTTGGAAATAGTGGTAGGAGAAACTCTTTTGGTGACAATTTTGATAGATCTAAACAAGTATCTCGTGATAATAACAGAGGATTTCGGGAAAACAACTTTGATGGGCAGAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAAGGGACCTAAAAGAGAAGGATTTGGAAAGCAGCAGCGTGAAAGATTTAATAATGATTGGGACAAGGACAGGGACTTTGGTAACTTTAGCAATAGTCGACGCGTTATTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

846

Amino Acids

97.05

Weight (kDa)

8.34

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	339 - 367	4.1e-08	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
AatII	GACGTC	1 cut(s)	1414
AccB7I	CCANNNNNTGG	2 cut(s)	454, 496
AccBSI	CCGCTC	2 cut(s)	140, 189
AccI	GTMKAC	2 cut(s)	922, 2521
AccII	CGCG	4 cut(s)	231, 326, 760, 2526
AclWI	GGATC	8 cut(s)	211, 797, 823, 908, 1355, 1368, 1621, 1923
AcoI	YGGCCR	2 cut(s)	365, 1712
AcsI	RAATTY	8 cut(s)	594, 712, 1054, 1300, 1402, 1753, 1990, 2254
AcuI	CTGAAG	1 cut(s)	1370
AcyI	GRCGYC	2 cut(s)	171, 1411
AfaI	GTAC	3 cut(s)	17, 622, 822
AfiI	CCNNNNNNNGG	7 cut(s)	260, 367, 454, 496, 812, 1499, 2174
AflIII	ACRYGT	1 cut(s)	2524
AgeI	ACCGGT	1 cut(s)	552
AgsI	TTSAA	7 cut(s)	380, 514, 593, 1590, 2013, 2092, 2534
AhdI	GACNNNNNGTC	1 cut(s)	1321
AhlI	ACTAGT	1 cut(s)	1841
AjiI	CACGTC	2 cut(s)	307, 998
AjnI	CCWGG	5 cut(s)	489, 1117, 1279, 1295, 1492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1031, 1063
AluBI	AGCT	7 cut(s)	150, 224, 652, 895, 1111, 1863, 1883
AluI	AGCT	7 cut(s)	150, 224, 652, 895, 1111, 1863, 1883
Alw21I	GWGCWC	2 cut(s)	360, 2101
Alw26I	GTCTC	6 cut(s)	574, 1099, 1386, 1732, 1965, 2184
Alw44I	GTGCAC	2 cut(s)	356, 2097
AlwI	GGATC	8 cut(s)	211, 797, 823, 908, 1355, 1368, 1621, 1923
Ama87I	CYCGRG	2 cut(s)	616, 2172
AoxI	GGCC	6 cut(s)	365, 1243, 1277, 1284, 1712, 2264
ApaLI	GTGCAC	2 cut(s)	356, 2097
ApeKI	GCWGC	6 cut(s)	400, 964, 1111, 1343, 2455, 2458
ApoI	RAATTY	8 cut(s)	594, 712, 1054, 1300, 1402, 1753, 1990, 2254
ArsI	GACNNNNNNTTYG	4 cut(s)	1780, 1812, 2483, 2515
AsiGI	ACCGGT	1 cut(s)	552
Asp700I	GAANNNNTTC	2 cut(s)	1404, 2141
AspA2I	CCTAGG	1 cut(s)	1247
AspLEI	GCGC	3 cut(s)	231, 760, 1197
AsuHPI	GGTGA	3 cut(s)	346, 946, 2324
AsuII	TTCGAA	2 cut(s)	267, 647
AvaI	CYCGRG	2 cut(s)	616, 2172
AvaII	GGWCC	8 cut(s)	199, 293, 311, 445, 550, 570, 1637, 2429
AvrII	CCTAGG	1 cut(s)	1247
AxyI	CCTNAGG	1 cut(s)	26
BaeGI	GKGCMC	3 cut(s)	360, 1136, 2101
BamHI	GGATCC	1 cut(s)	1360
BanII	GRGCYC	1 cut(s)	1890
BauI	CACGAG	2 cut(s)	2181, 2343
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	360, 2101
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	6 cut(s)	412, 976, 1098, 1330, 2467, 2470
BccI	CCATC	8 cut(s)	379, 1252, 1322, 1684, 1699, 1855, 2210, 2375
BceAI	ACGGC	1 cut(s)	1727
BciT130I	CCWGG	5 cut(s)	491, 1119, 1281, 1297, 1494
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	6 cut(s)	574, 1099, 1386, 1732, 1965, 2184
BcuI	ACTAGT	1 cut(s)	1841
BfaI	CTAG	6 cut(s)	918, 1248, 1254, 1812, 1842, 1913
BfmI	CTRYAG	3 cut(s)	700, 861, 1079
BfoI	RGCGCY	1 cut(s)	1198
BglII	AGATCT	1 cut(s)	2327
BisI	GCNGC	8 cut(s)	327, 330, 401, 965, 1112, 1344, 2456, 2459
BlnI	CCTAGG	1 cut(s)	1247
BlsI	GCNGC	8 cut(s)	328, 331, 402, 966, 1113, 1345, 2457, 2460
Bme1390I	CCNGG	5 cut(s)	491, 1119, 1281, 1297, 1494
Bme18I	GGWCC	8 cut(s)	199, 293, 311, 445, 550, 570, 1637, 2429
BmeRI	GACNNNNNGTC	1 cut(s)	1321
BmeT110I	CYCGRG	2 cut(s)	616, 2172
BmgBI	CACGTC	2 cut(s)	307, 998
BmiI	GGNNCC	6 cut(s)	295, 312, 1285, 1362, 2265, 2430
BmrFI	CCNGG	5 cut(s)	491, 1119, 1281, 1297, 1494
BmsI	GCATC	5 cut(s)	454, 602, 1078, 1465, 1714
BoxI	GACNNNNGTC	1 cut(s)	1557
BpiI	GAAGAC	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	2 cut(s)	267, 647
BpuEI	CTTGAG	1 cut(s)	1377
BsaBI	GATNNNNATC	3 cut(s)	1618, 1908, 1914
BsaHI	GRCGYC	2 cut(s)	171, 1411
BsaI	GGTCTC	2 cut(s)	1386, 2184
BsaJI	CCNNGG	8 cut(s)	324, 362, 489, 490, 1247, 1280, 2173, 2401
BsaWI	WCCGGW	3 cut(s)	313, 552, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	1657, 1687
Bsc4I	CCNNNNNNNGG	7 cut(s)	260, 367, 454, 496, 812, 1499, 2174
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	2 cut(s)	1031, 1364
Bse21I	CCTNAGG	1 cut(s)	26
Bse8I	GATNNNNATC	3 cut(s)	1618, 1908, 1914
BseBI	CCWGG	5 cut(s)	491, 1119, 1281, 1297, 1494
BseDI	CCNNGG	8 cut(s)	324, 362, 489, 490, 1247, 1280, 2173, 2401
BseGI	GGATG	4 cut(s)	617, 757, 1263, 1909
BseJI	GATNNNNATC	3 cut(s)	1618, 1908, 1914
BseLI	CCNNNNNNNGG	7 cut(s)	260, 367, 454, 496, 812, 1499, 2174
BseMII	CTCAG	4 cut(s)	40, 160, 887, 1743
BseNI	ACTGG	2 cut(s)	1031, 1364
BseRI	GAGGAG	6 cut(s)	14, 97, 100, 918, 960, 1996
BseSI	GKGCMC	3 cut(s)	360, 1136, 2101
BseXI	GCAGC	6 cut(s)	412, 976, 1098, 1330, 2467, 2470
BseYI	CCCAGC	1 cut(s)	1883
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	4 cut(s)	231, 326, 760, 2526
BshFI	GGCC	6 cut(s)	367, 1245, 1279, 1286, 1714, 2266
BshTI	ACCGGT	1 cut(s)	552
BsiHKAI	GWGCWC	2 cut(s)	360, 2101
BsiHKCI	CYCGRG	2 cut(s)	616, 2172
BsiSI	CCGG	4 cut(s)	314, 368, 553, 932
BslFI	GGGAC	6 cut(s)	279, 324, 1037, 2442, 2498, 2510
BslI	CCNNNNNNNGG	7 cut(s)	260, 367, 454, 496, 812, 1499, 2174
BsmAI	GTCTC	6 cut(s)	574, 1099, 1386, 1732, 1965, 2184
BsmFI	GGGAC	6 cut(s)	279, 324, 1037, 2442, 2498, 2510
BsnI	GGCC	6 cut(s)	367, 1245, 1279, 1286, 1714, 2266
Bso31I	GGTCTC	2 cut(s)	1386, 2184
BsoBI	CYCGRG	2 cut(s)	616, 2172
Bsp119I	TTCGAA	2 cut(s)	267, 647
Bsp1286I	GDGCHC	4 cut(s)	360, 1136, 1890, 2101
BspANI	GGCC	6 cut(s)	367, 1245, 1279, 1286, 1714, 2266
BspCNI	CTCAG	4 cut(s)	39, 159, 888, 1742
BspFNI	CGCG	4 cut(s)	231, 326, 760, 2526
BspHI	TCATGA	1 cut(s)	1050
BspLI	GGNNCC	6 cut(s)	295, 312, 1285, 1362, 2265, 2430
BspMAI	CTGCAG	2 cut(s)	704, 1083
BspPI	GGATC	8 cut(s)	211, 797, 823, 908, 1355, 1368, 1621, 1923
BspT104I	TTCGAA	2 cut(s)	267, 647
BspTNI	GGTCTC	2 cut(s)	1386, 2184
BsrBI	CCGCTC	2 cut(s)	140, 189
BsrFI	RCCGGY	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	1031, 1364
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	8 cut(s)	324, 362, 489, 490, 1247, 1280, 2173, 2401
BssNI	GRCGYC	2 cut(s)	171, 1411
BssSI	CACGAG	2 cut(s)	2181, 2343
BssT1I	CCWWGG	1 cut(s)	1247
Bst2BI	CACGAG	2 cut(s)	2181, 2343
Bst2UI	CCWGG	5 cut(s)	491, 1119, 1281, 1297, 1494
Bst4CI	ACNGT	5 cut(s)	853, 862, 1631, 2087, 2402
Bst6I	CTCTTC	5 cut(s)	83, 649, 1389, 1963, 2117
BstACI	GRCGYC	2 cut(s)	171, 1411
BstAPI	GCANNNNNTGC	1 cut(s)	1340
BstBI	TTCGAA	2 cut(s)	267, 647
BstC8I	GCNNGC	8 cut(s)	142, 277, 324, 1079, 1193, 1656, 1660, 1716
BstDEI	CTNAG	5 cut(s)	26, 146, 896, 1695, 1729
BstDSI	CCRYGG	3 cut(s)	324, 362, 2401
BstF5I	GGATG	4 cut(s)	617, 757, 1263, 1909
BstFNI	CGCG	4 cut(s)	231, 326, 760, 2526
BstH2I	RGCGCY	1 cut(s)	1198
BstHHI	GCGC	3 cut(s)	231, 760, 1197
BstMAI	GTCTC	6 cut(s)	574, 1099, 1386, 1732, 1965, 2184
BstMWI	GCNNNNNNNGC	8 cut(s)	364, 400, 1041, 1140, 1234, 1292, 1340, 1711
BstNI	CCWGG	5 cut(s)	491, 1119, 1281, 1297, 1494
BstNSI	RCATGY	3 cut(s)	1176, 1228, 1658
BstPAI	GACNNNNGTC	1 cut(s)	1557
BstSCI	CCNGG	5 cut(s)	489, 1117, 1279, 1295, 1492
BstSFI	CTRYAG	3 cut(s)	700, 861, 1079
BstSLI	GKGCMC	3 cut(s)	360, 1136, 2101
BstUI	CGCG	4 cut(s)	231, 326, 760, 2526
BstV1I	GCAGC	6 cut(s)	412, 976, 1098, 1330, 2467, 2470
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	6 cut(s)	216, 913, 1360, 1613, 1928, 2327
BstXI	CCANNNNNNTGG	1 cut(s)	1125
BstYI	RGATCY	6 cut(s)	216, 913, 1360, 1613, 1928, 2327
Bsu36I	CCTNAGG	1 cut(s)	26
BsuRI	GGCC	6 cut(s)	367, 1245, 1279, 1286, 1714, 2266
BtgI	CCRYGG	3 cut(s)	324, 362, 2401
BtgZI	GCGATG	1 cut(s)	2163
BtrI	CACGTC	2 cut(s)	307, 998
BtsCI	GGATG	4 cut(s)	617, 757, 1263, 1909
BtsI	GCAGTG	1 cut(s)	1088
BtsIMutI	CAGTG	2 cut(s)	1088, 1636
Cac8I	GCNNGC	8 cut(s)	142, 277, 324, 1079, 1193, 1656, 1660, 1716
CciI	TCATGA	1 cut(s)	1050
CfoI	GCGC	3 cut(s)	231, 760, 1197
Cfr10I	RCCGGY	1 cut(s)	552
Cfr42I	CCGCGG	1 cut(s)	327
CseI	GACGC	3 cut(s)	179, 1085, 2532
Csp6I	GTAC	3 cut(s)	16, 621, 821
CspAI	ACCGGT	1 cut(s)	552
CviAII	CATG	7 cut(s)	479, 1051, 1173, 1225, 1655, 1702, 1799
CviQI	GTAC	3 cut(s)	16, 621, 821
DdeI	CTNAG	5 cut(s)	26, 146, 896, 1695, 1729
DraI	TTTAAA	3 cut(s)	1152, 1752, 2107
DrdI	GACNNNNNNGTC	1 cut(s)	443
DriI	GACNNNNNGTC	1 cut(s)	1321
DseDI	GACNNNNNNGTC	1 cut(s)	443
EaeI	YGGCCR	2 cut(s)	365, 1712
Eam1104I	CTCTTC	5 cut(s)	83, 649, 1389, 1963, 2117
Eam1105I	GACNNNNNGTC	1 cut(s)	1321
EarI	CTCTTC	5 cut(s)	83, 649, 1389, 1963, 2117
EciI	GGCGGA	2 cut(s)	60, 289
Eco130I	CCWWGG	1 cut(s)	1247
Eco24I	GRGCYC	1 cut(s)	1890
Eco31I	GGTCTC	2 cut(s)	1386, 2184
Eco47I	GGWCC	8 cut(s)	199, 293, 311, 445, 550, 570, 1637, 2429
Eco57I	CTGAAG	1 cut(s)	1370
Eco81I	CCTNAGG	1 cut(s)	26
Eco88I	CYCGRG	2 cut(s)	616, 2172
EcoO109I	RGGNCCY	4 cut(s)	570, 1284, 2264, 2429
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	5 cut(s)	489, 1117, 1279, 1295, 1492
EcoT14I	CCWWGG	1 cut(s)	1247
EcoT22I	ATGCAT	1 cut(s)	1707
EcoT38I	GRGCYC	1 cut(s)	1890
ErhI	CCWWGG	1 cut(s)	1247
FaeI	CATG	7 cut(s)	482, 1054, 1176, 1228, 1658, 1705, 1802
FalI	AAGNNNNNCTT	4 cut(s)	1031, 1063, 1368, 1400
FaqI	GGGAC	6 cut(s)	279, 324, 1037, 2442, 2498, 2510
FatI	CATG	7 cut(s)	478, 1050, 1172, 1224, 1654, 1701, 1798
FauI	CCCGC	2 cut(s)	284, 331
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	2 cut(s)	922, 2521
Fnu4HI	GCNGC	8 cut(s)	327, 330, 401, 965, 1112, 1344, 2456, 2459
FokI	GGATG	4 cut(s)	624, 764, 1270, 1916
FriOI	GRGCYC	1 cut(s)	1890
Fsp4HI	GCNGC	8 cut(s)	327, 330, 401, 965, 1112, 1344, 2456, 2459
FspBI	CTAG	6 cut(s)	918, 1248, 1254, 1812, 1842, 1913
GlaI	GCGC	3 cut(s)	230, 759, 1196
GluI	GCNGC	8 cut(s)	327, 330, 401, 965, 1112, 1344, 2456, 2459
GsaI	CCCAGC	1 cut(s)	1887
HaeII	RGCGCY	1 cut(s)	1198
HaeIII	GGCC	6 cut(s)	367, 1245, 1279, 1286, 1714, 2266
HapII	CCGG	4 cut(s)	314, 368, 553, 932
HgaI	GACGC	3 cut(s)	179, 1085, 2532
HhaI	GCGC	3 cut(s)	231, 760, 1197
Hin1I	GRCGYC	2 cut(s)	171, 1411
Hin1II	CATG	7 cut(s)	482, 1054, 1176, 1228, 1658, 1705, 1802
Hin6I	GCGC	3 cut(s)	229, 758, 1195
HinP1I	GCGC	3 cut(s)	229, 758, 1195
HincII	GTYRAC	2 cut(s)	1456, 2522
HindII	GTYRAC	2 cut(s)	1456, 2522
HindIII	AAGCTT	1 cut(s)	1861
HpaII	CCGG	4 cut(s)	314, 368, 553, 932
HphI	GGTGA	3 cut(s)	346, 946, 2324
Hpy166II	GTNNAC	6 cut(s)	358, 923, 1456, 1943, 2099, 2522
Hpy8I	GTNNAC	6 cut(s)	358, 923, 1456, 1943, 2099, 2522
Hpy99I	CGWCG	5 cut(s)	173, 308, 1413, 1713, 2526
HpyCH4III	ACNGT	5 cut(s)	853, 862, 1631, 2087, 2402
HpyCH4IV	ACGT	4 cut(s)	306, 997, 1240, 1411
HpyF10VI	GCNNNNNNNGC	8 cut(s)	364, 400, 1041, 1140, 1234, 1292, 1340, 1711
HpyF3I	CTNAG	5 cut(s)	26, 146, 896, 1695, 1729
HpySE526I	ACGT	4 cut(s)	306, 997, 1240, 1411
Hsp92I	GRCGYC	2 cut(s)	171, 1411
Hsp92II	CATG	7 cut(s)	482, 1054, 1176, 1228, 1658, 1705, 1802
HspAI	GCGC	3 cut(s)	229, 758, 1195
Ksp22I	TGATCA	1 cut(s)	936
KspI	CCGCGG	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	194, 1040
Lsp1109I	GCAGC	6 cut(s)	412, 976, 1098, 1330, 2467, 2470
LweI	GCATC	5 cut(s)	454, 602, 1078, 1465, 1714
MaeI	CTAG	6 cut(s)	918, 1248, 1254, 1812, 1842, 1913
MaeII	ACGT	4 cut(s)	306, 997, 1240, 1411
MaeIII	GTNAC	5 cut(s)	831, 2231, 2312, 2396, 2504
MbiI	CCGCTC	2 cut(s)	140, 189
MfeI	CAATTG	1 cut(s)	1590
MflI	RGATCY	6 cut(s)	216, 913, 1360, 1613, 1928, 2327
MhlI	GDGCHC	4 cut(s)	360, 1136, 1890, 2101
MluI	ACGCGT	1 cut(s)	2524
MlyI	GAGTC	1 cut(s)	1331
MmeI	TCCRAC	3 cut(s)	216, 973, 1530
Mph1103I	ATGCAT	1 cut(s)	1707
MroXI	GAANNNNTTC	2 cut(s)	1404, 2141
MslI	CAYNNNNRTG	2 cut(s)	675, 1010
MspA1I	CMGCKG	3 cut(s)	326, 1111, 2115
MspI	CCGG	4 cut(s)	314, 368, 553, 932
MspR9I	CCNGG	5 cut(s)	491, 1119, 1281, 1297, 1494
MunI	CAATTG	1 cut(s)	1590
MvaI	CCWGG	5 cut(s)	491, 1119, 1281, 1297, 1494
MvnI	CGCG	4 cut(s)	231, 326, 760, 2526
MwoI	GCNNNNNNNGC	8 cut(s)	364, 400, 1041, 1140, 1234, 1292, 1340, 1711
NlaIII	CATG	7 cut(s)	482, 1054, 1176, 1228, 1658, 1705, 1802
NlaIV	GGNNCC	6 cut(s)	295, 312, 1285, 1362, 2265, 2430
NmuCI	GTSAC	2 cut(s)	831, 2312
NsiI	ATGCAT	1 cut(s)	1707
NspI	RCATGY	3 cut(s)	1176, 1228, 1658
NspV	TTCGAA	2 cut(s)	267, 647
PaeI	GCATGC	1 cut(s)	1658
PagI	TCATGA	1 cut(s)	1050
PasI	CCCWGGG	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 994
PdmI	GAANNNNTTC	2 cut(s)	1404, 2141
PfeI	GAWTC	9 cut(s)	233, 284, 485, 1273, 1568, 1619, 1808, 2009, 2027
PflMI	CCANNNNNTGG	2 cut(s)	454, 496
PfoI	TCCNGGA	1 cut(s)	1117
PinAI	ACCGGT	1 cut(s)	552
PkrI	GCNGC	8 cut(s)	328, 331, 402, 966, 1113, 1345, 2457, 2460
PleI	GAGTC	1 cut(s)	1330
PpsI	GAGTC	1 cut(s)	1330
PpuMI	RGGWCCY	2 cut(s)	570, 2429
PshAI	GACNNNNGTC	1 cut(s)	1557
Psp5II	RGGWCCY	2 cut(s)	570, 2429
Psp6I	CCWGG	5 cut(s)	489, 1117, 1279, 1295, 1492
PspFI	CCCAGC	1 cut(s)	1883
PspGI	CCWGG	5 cut(s)	489, 1117, 1279, 1295, 1492
PspN4I	GGNNCC	6 cut(s)	295, 312, 1285, 1362, 2265, 2430
PspPPI	RGGWCCY	2 cut(s)	570, 2429
PstI	CTGCAG	2 cut(s)	704, 1083
PsuI	RGATCY	6 cut(s)	216, 913, 1360, 1613, 1928, 2327
PvuII	CAGCTG	1 cut(s)	1111
RsaI	GTAC	3 cut(s)	17, 622, 822
RsaNI	GTAC	3 cut(s)	16, 621, 821
RseI	CAYNNNNRTG	2 cut(s)	675, 1010
SacII	CCGCGG	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	2520
SatI	GCNGC	8 cut(s)	327, 330, 401, 965, 1112, 1344, 2456, 2459
SchI	GAGTC	1 cut(s)	1331
ScrFI	CCNGG	5 cut(s)	491, 1119, 1281, 1297, 1494
SduI	GDGCHC	4 cut(s)	360, 1136, 1890, 2101
SfaNI	GCATC	5 cut(s)	454, 602, 1078, 1465, 1714
SfcI	CTRYAG	3 cut(s)	700, 861, 1079
Sfr303I	CCGCGG	1 cut(s)	327
SfuI	TTCGAA	2 cut(s)	267, 647
SgrBI	CCGCGG	1 cut(s)	327
SinI	GGWCC	8 cut(s)	199, 293, 311, 445, 550, 570, 1637, 2429
SmiI	ATTTAAAT	2 cut(s)	1752, 2107
SmiMI	CAYNNNNRTG	2 cut(s)	675, 1010
SmlI	CTYRAG	1 cut(s)	1392
SmoI	CTYRAG	1 cut(s)	1392
SpeI	ACTAGT	1 cut(s)	1841
SphI	GCATGC	1 cut(s)	1658
SspI	AATATT	2 cut(s)	1469, 1924
SspMI	CTAG	6 cut(s)	918, 1248, 1254, 1812, 1842, 1913
StyD4I	CCNGG	5 cut(s)	489, 1117, 1279, 1295, 1492
StyI	CCWWGG	1 cut(s)	1247
SwaI	ATTTAAAT	2 cut(s)	1752, 2107
TaaI	ACNGT	5 cut(s)	853, 862, 1631, 2087, 2402
TaiI	ACGT	4 cut(s)	309, 1000, 1243, 1414
TatI	WGTACW	2 cut(s)	620, 820
TauI	GCSGC	2 cut(s)	329, 332
TfiI	GAWTC	9 cut(s)	233, 284, 485, 1273, 1568, 1619, 1808, 2009, 2027
TscAI	CASTG	2 cut(s)	1088, 1636
TseFI	GTSAC	2 cut(s)	831, 2312
TseI	GCWGC	6 cut(s)	400, 964, 1111, 1343, 2455, 2458
Tsp45I	GTSAC	2 cut(s)	831, 2312
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	2 cut(s)	1088, 1636
Van91I	CCANNNNNTGG	2 cut(s)	454, 496
VneI	GTGCAC	2 cut(s)	356, 2097
VpaK11BI	GGWCC	8 cut(s)	199, 293, 311, 445, 550, 570, 1637, 2429
XapI	RAATTY	8 cut(s)	594, 712, 1054, 1300, 1402, 1753, 1990, 2254
XbaI	TCTAGA	2 cut(s)	1811, 1912
XceI	RCATGY	3 cut(s)	1176, 1228, 1658
XmaJI	CCTAGG	1 cut(s)	1247
XmiI	GTMKAC	2 cut(s)	922, 2521
XmnI	GAANNNNTTC	2 cut(s)	1404, 2141
XspI	CTAG	6 cut(s)	918, 1248, 1254, 1812, 1842, 1913
ZraI	GACGTC	1 cut(s)	1412
Zsp2I	ATGCAT	1 cut(s)	1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.