Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

45643905 .. 45648438

Gene Structure 4534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGGCACCATCTCCGTACTCTCTACTCCTCCTCAGGCGTTTGATCTCTCGCTATTCCTTAAACCCAAAACCCTCTCCGCCTCTCTTCTCTCTCCTAAAACCCTTCTCTACCTCCTCCTCGAACCCAAACCCCTCCTCTCTCTCCGCTCGCCTCAGCTTCGTCTTCGACCAAATCGACGCCATCGAGAAAGACCGCTCCGACAAGGACCAAACCCTCCAAAAGATCCGAGCTTGGCGAGAATCCAAAAACCCCCAATCCCCAGAATTAGGGTTCGAAAATCCCCACCTCGATTCGATTGGTCCCGCCGCCGATGTGGGACCGGAGAAGCCCGCGGCGGCGGCGGTGAAGAAGGAGGTGGAGGTGGTGCACCCGTGGCCGGAGTGGATTGAACTGATGGAGAGGCTGGTGCAGCAGAACTACTTTGACCATAGGAGGAAAGACGAGGACAGAATGGTCCAAGAAATGGGCTTTGATGCCTCTGAAATCCATGATGATTCCCAGGGTTTGGATTTCAGGGATTTCAAGGCTGTTCATACCGCCTGTCTTAATTTCGGGAAGGACCGGTTTGATATTTTCAGGTCCTTGTCGAGACAGGATATTCAAATTTTGGTGGGTTTTGGATGCCCGAGTACGGACAAGAAGGTGGTTTTCTCTTCAAAGCTGTTAAGGAAGCACACCCACCTTGATGAAGGAGATGTTTGTAGTTCCTGCAGTTTAAGGAATTCCTGTGAAAGAGCATATCTGATTACTAACAAAGAGGATGAGGCACGGACTATTGATATAATGCGTGTTTTATTGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAGGTCACTTCTAAAACAAAAAACTGTTAAAACTGTAGTCCGTAAGTTGCTTCATCAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCAGTGATCAAAAAGCCACCCCCAAAAGTGAAGCAGCCTCCTCCCCCTCCAAGAAAACGAGTTGGACGTGATGACATTGAGATGAAAAAAGGGGACTGGCTGTGCTCTAAGTGCGACTTCATGAATTTTGCGAAGAACAGCCTGTGCCTGCAGTGTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAGTGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGATGAATATATTGAGAACAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCTGAGGCCTCTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCAGATGGGGCAGATGTTGCTGCTTTTGAGTATGCGGATCCAGTAATGAGTGAAGGGTCTCTTGACACCCAGGCTCAAGGGGGAAATTTTCGACGTCCTGAATACGATTTCAGTAAAAATAGGAGAGTGTCAAGGGTTGACAATGAAGAATATTCTGATGCTGACACTATTAAGCCAGGCAGAGGGTTTGATGATTTTGATGATGAAGATGATGATATTGACAATTATGAGTTGGACACTCGTACTAAAGATTCAGCACAGAACACTTCTTCAATTGATTTTTCTGAATTGGAGGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATTTGCATGGTCGCAAAACACACTCTCCATCTTACAATAAGCCATCTAAGTCTATGCATCGACGGGCAGCATTATCTGTCTCAGATGATGATGAAATTGATATAAATTCTGGCGAAGACCTTTCAGTTCTTCCCAACCGAAGATCAAGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGGTAGAAACTCAATTGGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCTACTCGGATGTGGATGATGATTTAGATCAAAATATTAGATCCAGACAAGGTAAACCGAACAAATTGAGTTCTGGGAGAAAAGACTTTCAGAGGAGAAGAAATTTTGATAGTGAAGATGATTCAATGTCTCGTTCAGAATCAGAGAATGATGATTTTCATTCTCATAAAAATAGGCACAGAGGAAATAAACCAAACAGTTTCAAAGGTGCACAATTTAAATCTGGTGGAATGAAGAGTGGCAGGAAGAACTCTTTCAGCGATGATGACTTTGATAGACCAACCCGAGGGTCTCGTGATAACAGAGGATTTCAAGGGAATGATTTTGATGGGCAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAAGAGAAGCATTTGGAAATGGTAGGAGAAACTCTTTTGGTGACGATTTTGATAGATCTAGACAAGTATCTCGTGGTAATAACAGAGGATTTCGGGAAAACAACTTTGATGGGCAGAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAAGGGACCCAAAAGAGAAGGATTTGGAAAGCAGCAGCGTGAAAGATTTAATAATGATTGGGACAAGGACAGGGACTTTGGTAACTTTAGCAATAGTCGACGCGTTATTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

850

Amino Acids

97.32

Weight (kDa)

7.84

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	342 - 370	4.1e-08	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
AatII	GACGTC	1 cut(s)	1429
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	463, 505
AccBSI	CCGCTC	2 cut(s)	146, 195
AccI	GTMKAC	2 cut(s)	931, 2533
AccII	CGCG	2 cut(s)	332, 2538
AclWI	GGATC	8 cut(s)	217, 806, 832, 917, 1364, 1377, 1636, 1938
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	8 cut(s)	603, 721, 1063, 1309, 1417, 1768, 2005, 2269
AcyI	GRCGYC	2 cut(s)	177, 1426
AfaI	GTAC	4 cut(s)	17, 631, 831, 1576
AfiI	CCNNNNNNNGG	8 cut(s)	266, 376, 463, 505, 631, 821, 1514, 2189
AflIII	ACRYGT	1 cut(s)	2536
AgeI	ACCGGT	1 cut(s)	561
AgsI	TTSAA	9 cut(s)	389, 523, 602, 657, 1605, 2028, 2107, 2216, 2546
AhdI	GACNNNNNGTC	1 cut(s)	1330
AjiI	CACGTC	1 cut(s)	1007
AjnI	CCWGG	5 cut(s)	498, 1126, 1304, 1401, 1507
AluBI	AGCT	7 cut(s)	156, 230, 661, 904, 1120, 1878, 1898
AluI	AGCT	7 cut(s)	156, 230, 661, 904, 1120, 1878, 1898
Alw21I	GWGCWC	3 cut(s)	369, 1046, 2116
Alw26I	GTCTC	6 cut(s)	583, 1108, 1395, 1747, 2037, 2199
Alw44I	GTGCAC	2 cut(s)	365, 2112
AlwI	GGATC	8 cut(s)	217, 806, 832, 917, 1364, 1377, 1636, 1938
Ama87I	CYCGRG	2 cut(s)	625, 2187
AoxI	GGCC	5 cut(s)	374, 1252, 1286, 1293, 2279
ApaLI	GTGCAC	2 cut(s)	365, 2112
ApeKI	GCWGC	7 cut(s)	409, 973, 1120, 1352, 1730, 2467, 2470
ApoI	RAATTY	8 cut(s)	603, 721, 1063, 1309, 1417, 1768, 2005, 2269
ArsI	GACNNNNNNTTYG	4 cut(s)	1795, 1827, 2495, 2527
AsiGI	ACCGGT	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	2156
AspA2I	CCTAGG	1 cut(s)	1256
AspLEI	GCGC	1 cut(s)	1206
AsuHPI	GGTGA	2 cut(s)	355, 2336
AsuII	TTCGAA	1 cut(s)	273
AvaI	CYCGRG	2 cut(s)	625, 2187
AvaII	GGWCC	9 cut(s)	205, 299, 317, 454, 559, 579, 1652, 1859, 2441
AvrII	CCTAGG	1 cut(s)	1256
AxyI	CCTNAGG	2 cut(s)	32, 1290
BaeGI	GKGCMC	3 cut(s)	369, 1145, 2116
BamHI	GGATCC	1 cut(s)	1369
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	1905
BauI	CACGAG	2 cut(s)	2196, 2355
BbsI	GAAGAC	2 cut(s)	154, 1785
Bbv12I	GWGCWC	3 cut(s)	369, 1046, 2116
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	7 cut(s)	421, 985, 1107, 1339, 1742, 2479, 2482
BciT130I	CCWGG	5 cut(s)	500, 1128, 1306, 1403, 1509
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	6 cut(s)	583, 1108, 1395, 1747, 2037, 2199
BfaI	CTAG	5 cut(s)	927, 1257, 1263, 1827, 2343
BfmI	CTRYAG	3 cut(s)	709, 870, 1088
BfoI	RGCGCY	1 cut(s)	1207
BglII	AGATCT	1 cut(s)	2339
BlnI	CCTAGG	1 cut(s)	1256
Bme1390I	CCNGG	5 cut(s)	500, 1128, 1306, 1403, 1509
Bme18I	GGWCC	9 cut(s)	205, 299, 317, 454, 559, 579, 1652, 1859, 2441
BmeRI	GACNNNNNGTC	1 cut(s)	1330
BmeT110I	CYCGRG	2 cut(s)	625, 2187
BmgBI	CACGTC	1 cut(s)	1007
BmiI	GGNNCC	7 cut(s)	6, 301, 318, 1371, 2280, 2442, 2443
BmrFI	CCNGG	5 cut(s)	500, 1128, 1306, 1403, 1509
BmsI	GCATC	5 cut(s)	463, 611, 1087, 1480, 1729
BpiI	GAAGAC	2 cut(s)	154, 1785
BpmI	CTGGAG	1 cut(s)	924
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	1392
BsaBI	GATNNNNATC	2 cut(s)	1633, 1929
BsaHI	GRCGYC	2 cut(s)	177, 1426
BsaI	GGTCTC	2 cut(s)	1395, 2199
BsaJI	CCNNGG	8 cut(s)	330, 371, 498, 499, 1256, 1401, 2188, 2413
BsaWI	WCCGGW	2 cut(s)	319, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	1672, 1702
Bsc4I	CCNNNNNNNGG	8 cut(s)	266, 376, 463, 505, 631, 821, 1514, 2189
Bse118I	RCCGGY	1 cut(s)	561
Bse1I	ACTGG	3 cut(s)	941, 1040, 1373
Bse21I	CCTNAGG	2 cut(s)	32, 1290
Bse8I	GATNNNNATC	2 cut(s)	1633, 1929
BseBI	CCWGG	5 cut(s)	500, 1128, 1306, 1403, 1509
BseDI	CCNNGG	8 cut(s)	330, 371, 498, 499, 1256, 1401, 2188, 2413
BseGI	GGATG	5 cut(s)	626, 766, 1272, 1918, 1924
BseJI	GATNNNNATC	2 cut(s)	1633, 1929
BseLI	CCNNNNNNNGG	8 cut(s)	266, 376, 463, 505, 631, 821, 1514, 2189
BseMII	CTCAG	5 cut(s)	46, 166, 896, 1281, 1758
BseNI	ACTGG	3 cut(s)	941, 1040, 1373
BseRI	GAGGAG	8 cut(s)	17, 20, 103, 106, 124, 927, 969, 2011
BseSI	GKGCMC	3 cut(s)	369, 1145, 2116
BseXI	GCAGC	7 cut(s)	421, 985, 1107, 1339, 1742, 2479, 2482
BseYI	CCCAGC	1 cut(s)	1898
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	2 cut(s)	332, 2538
BshFI	GGCC	5 cut(s)	376, 1254, 1288, 1295, 2281
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	561
BsiHKAI	GWGCWC	3 cut(s)	369, 1046, 2116
BsiHKCI	CYCGRG	2 cut(s)	625, 2187
BsiSI	CCGG	3 cut(s)	320, 377, 562
BslFI	GGGAC	6 cut(s)	285, 330, 1046, 2454, 2510, 2522
BslI	CCNNNNNNNGG	8 cut(s)	266, 376, 463, 505, 631, 821, 1514, 2189
BsmAI	GTCTC	6 cut(s)	583, 1108, 1395, 1747, 2037, 2199
BsmFI	GGGAC	6 cut(s)	285, 330, 1046, 2454, 2510, 2522
BsnI	GGCC	5 cut(s)	376, 1254, 1288, 1295, 2281
Bso31I	GGTCTC	2 cut(s)	1395, 2199
BsoBI	CYCGRG	2 cut(s)	625, 2187
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	5 cut(s)	369, 1046, 1145, 1905, 2116
BspANI	GGCC	5 cut(s)	376, 1254, 1288, 1295, 2281
BspCNI	CTCAG	5 cut(s)	45, 165, 897, 1282, 1757
BspFNI	CGCG	2 cut(s)	332, 2538
BspHI	TCATGA	1 cut(s)	1059
BspLI	GGNNCC	7 cut(s)	6, 301, 318, 1371, 2280, 2442, 2443
BspMAI	CTGCAG	2 cut(s)	713, 1092
BspPI	GGATC	8 cut(s)	217, 806, 832, 917, 1364, 1377, 1636, 1938
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	1395, 2199
BsrBI	CCGCTC	2 cut(s)	146, 195
BsrFI	RCCGGY	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	941, 1040, 1373
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	8 cut(s)	330, 371, 498, 499, 1256, 1401, 2188, 2413
BssNI	GRCGYC	2 cut(s)	177, 1426
BssSI	CACGAG	2 cut(s)	2196, 2355
BssT1I	CCWWGG	1 cut(s)	1256
Bst2BI	CACGAG	2 cut(s)	2196, 2355
Bst2UI	CCWGG	5 cut(s)	500, 1128, 1306, 1403, 1509
Bst4CI	ACNGT	5 cut(s)	862, 871, 1646, 2102, 2414
Bst6I	CTCTTC	3 cut(s)	89, 658, 2132
BstACI	GRCGYC	2 cut(s)	177, 1426
BstAPI	GCANNNNNTGC	1 cut(s)	1349
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	4 cut(s)	148, 330, 1088, 1202
BstDEI	CTNAG	7 cut(s)	32, 152, 905, 1047, 1290, 1710, 1744
BstDSI	CCRYGG	3 cut(s)	330, 371, 2413
BstF5I	GGATG	5 cut(s)	626, 766, 1272, 1918, 1924
BstFNI	CGCG	2 cut(s)	332, 2538
BstH2I	RGCGCY	1 cut(s)	1207
BstHHI	GCGC	1 cut(s)	1206
BstMAI	GTCTC	6 cut(s)	583, 1108, 1395, 1747, 2037, 2199
BstMWI	GCNNNNNNNGC	8 cut(s)	338, 373, 409, 1050, 1149, 1243, 1301, 1349
BstNI	CCWGG	5 cut(s)	500, 1128, 1306, 1403, 1509
BstNSI	RCATGY	2 cut(s)	1185, 1237
BstSCI	CCNGG	5 cut(s)	498, 1126, 1304, 1401, 1507
BstSFI	CTRYAG	3 cut(s)	709, 870, 1088
BstSLI	GKGCMC	3 cut(s)	369, 1145, 2116
BstUI	CGCG	2 cut(s)	332, 2538
BstV1I	GCAGC	7 cut(s)	421, 985, 1107, 1339, 1742, 2479, 2482
BstV2I	GAAGAC	2 cut(s)	154, 1785
BstX2I	RGATCY	6 cut(s)	222, 922, 1369, 1628, 1943, 2339
BstXI	CCANNNNNNTGG	1 cut(s)	1134
BstYI	RGATCY	6 cut(s)	222, 922, 1369, 1628, 1943, 2339
Bsu36I	CCTNAGG	2 cut(s)	32, 1290
BsuRI	GGCC	5 cut(s)	376, 1254, 1288, 1295, 2281
BtgI	CCRYGG	3 cut(s)	330, 371, 2413
BtgZI	GCGATG	1 cut(s)	2178
BtrI	CACGTC	1 cut(s)	1007
BtsCI	GGATG	5 cut(s)	626, 766, 1272, 1918, 1924
BtsI	GCAGTG	1 cut(s)	1097
BtsIMutI	CAGTG	3 cut(s)	948, 1097, 1651
Cac8I	GCNNGC	4 cut(s)	148, 330, 1088, 1202
CciI	TCATGA	1 cut(s)	1059
CfoI	GCGC	1 cut(s)	1206
Cfr10I	RCCGGY	1 cut(s)	561
Cfr42I	CCGCGG	1 cut(s)	333
CseI	GACGC	3 cut(s)	185, 1094, 2544
Csp6I	GTAC	4 cut(s)	16, 630, 830, 1575
CspAI	ACCGGT	1 cut(s)	561
CviAII	CATG	6 cut(s)	488, 1060, 1182, 1234, 1670, 1814
CviQI	GTAC	4 cut(s)	16, 630, 830, 1575
DdeI	CTNAG	7 cut(s)	32, 152, 905, 1047, 1290, 1710, 1744
DraI	TTTAAA	2 cut(s)	1161, 2122
DrdI	GACNNNNNNGTC	1 cut(s)	452
DriI	GACNNNNNGTC	1 cut(s)	1330
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	3 cut(s)	89, 658, 2132
Eam1105I	GACNNNNNGTC	1 cut(s)	1330
EarI	CTCTTC	3 cut(s)	89, 658, 2132
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	1256
Eco147I	AGGCCT	1 cut(s)	1295
Eco24I	GRGCYC	1 cut(s)	1905
Eco31I	GGTCTC	2 cut(s)	1395, 2199
Eco47I	GGWCC	9 cut(s)	205, 299, 317, 454, 559, 579, 1652, 1859, 2441
Eco81I	CCTNAGG	2 cut(s)	32, 1290
Eco88I	CYCGRG	2 cut(s)	625, 2187
EcoO109I	RGGNCCY	3 cut(s)	579, 2279, 2441
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	5 cut(s)	498, 1126, 1304, 1401, 1507
EcoT14I	CCWWGG	1 cut(s)	1256
EcoT22I	ATGCAT	1 cut(s)	1722
EcoT38I	GRGCYC	1 cut(s)	1905
ErhI	CCWWGG	1 cut(s)	1256
FaeI	CATG	6 cut(s)	491, 1063, 1185, 1237, 1673, 1817
FalI	AAGNNNNNCTT	4 cut(s)	1040, 1072, 1377, 1409
FaqI	GGGAC	6 cut(s)	285, 330, 1046, 2454, 2510, 2522
FatI	CATG	6 cut(s)	487, 1059, 1181, 1233, 1669, 1813
FauI	CCCGC	2 cut(s)	310, 337
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	2 cut(s)	931, 2533
FokI	GGATG	5 cut(s)	633, 773, 1279, 1925, 1931
FriOI	GRGCYC	1 cut(s)	1905
FspBI	CTAG	5 cut(s)	927, 1257, 1263, 1827, 2343
GlaI	GCGC	1 cut(s)	1205
GsaI	CCCAGC	1 cut(s)	1902
GsuI	CTGGAG	1 cut(s)	924
HaeII	RGCGCY	1 cut(s)	1207
HaeIII	GGCC	5 cut(s)	376, 1254, 1288, 1295, 2281
HapII	CCGG	3 cut(s)	320, 377, 562
HgaI	GACGC	3 cut(s)	185, 1094, 2544
HhaI	GCGC	1 cut(s)	1206
Hin1I	GRCGYC	2 cut(s)	177, 1426
Hin1II	CATG	6 cut(s)	491, 1063, 1185, 1237, 1673, 1817
Hin6I	GCGC	1 cut(s)	1204
HinP1I	GCGC	1 cut(s)	1204
HincII	GTYRAC	2 cut(s)	1471, 2534
HindII	GTYRAC	2 cut(s)	1471, 2534
HindIII	AAGCTT	1 cut(s)	1876
HpaII	CCGG	3 cut(s)	320, 377, 562
HphI	GGTGA	2 cut(s)	355, 2336
Hpy166II	GTNNAC	6 cut(s)	367, 932, 1471, 1958, 2114, 2534
Hpy8I	GTNNAC	6 cut(s)	367, 932, 1471, 1958, 2114, 2534
Hpy99I	CGWCG	4 cut(s)	179, 1428, 1728, 2538
HpyAV	CCTTC	8 cut(s)	112, 343, 550, 634, 683, 1379, 1643, 2447
HpyCH4III	ACNGT	5 cut(s)	862, 871, 1646, 2102, 2414
HpyCH4IV	ACGT	3 cut(s)	1006, 1249, 1426
HpyF10VI	GCNNNNNNNGC	8 cut(s)	338, 373, 409, 1050, 1149, 1243, 1301, 1349
HpyF3I	CTNAG	7 cut(s)	32, 152, 905, 1047, 1290, 1710, 1744
HpySE526I	ACGT	3 cut(s)	1006, 1249, 1426
Hsp92I	GRCGYC	2 cut(s)	177, 1426
Hsp92II	CATG	6 cut(s)	491, 1063, 1185, 1237, 1673, 1817
HspAI	GCGC	1 cut(s)	1204
KflI	GGGWCCC	1 cut(s)	2441
Ksp22I	TGATCA	1 cut(s)	945
KspI	CCGCGG	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	7 cut(s)	421, 985, 1107, 1339, 1742, 2479, 2482
LweI	GCATC	5 cut(s)	463, 611, 1087, 1480, 1729
MaeI	CTAG	5 cut(s)	927, 1257, 1263, 1827, 2343
MaeII	ACGT	3 cut(s)	1006, 1249, 1426
MaeIII	GTNAC	5 cut(s)	840, 2246, 2324, 2408, 2516
MbiI	CCGCTC	2 cut(s)	146, 195
MfeI	CAATTG	2 cut(s)	1605, 1854
MflI	RGATCY	6 cut(s)	222, 922, 1369, 1628, 1943, 2339
MhlI	GDGCHC	5 cut(s)	369, 1046, 1145, 1905, 2116
MluI	ACGCGT	1 cut(s)	2536
MlyI	GAGTC	1 cut(s)	1340
MmeI	TCCRAC	3 cut(s)	222, 982, 1545
Mph1103I	ATGCAT	1 cut(s)	1722
MroXI	GAANNNNTTC	1 cut(s)	2156
MslI	CAYNNNNRTG	2 cut(s)	684, 1019
MspA1I	CMGCKG	2 cut(s)	332, 1120
MspI	CCGG	3 cut(s)	320, 377, 562
MspR9I	CCNGG	5 cut(s)	500, 1128, 1306, 1403, 1509
MunI	CAATTG	2 cut(s)	1605, 1854
MvaI	CCWGG	5 cut(s)	500, 1128, 1306, 1403, 1509
MvnI	CGCG	2 cut(s)	332, 2538
MwoI	GCNNNNNNNGC	8 cut(s)	338, 373, 409, 1050, 1149, 1243, 1301, 1349
NlaIII	CATG	6 cut(s)	491, 1063, 1185, 1237, 1673, 1817
NlaIV	GGNNCC	7 cut(s)	6, 301, 318, 1371, 2280, 2442, 2443
NmuCI	GTSAC	2 cut(s)	840, 2324
NsiI	ATGCAT	1 cut(s)	1722
NspI	RCATGY	2 cut(s)	1185, 1237
NspV	TTCGAA	1 cut(s)	273
PagI	TCATGA	1 cut(s)	1059
PasI	CCCWGGG	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	1295
PcsI	WCGNNNNNNNCGW	3 cut(s)	171, 180, 1003
PdmI	GAANNNNTTC	1 cut(s)	2156
PfeI	GAWTC	9 cut(s)	239, 290, 494, 1282, 1583, 1634, 1823, 2024, 2042
PflMI	CCANNNNNTGG	2 cut(s)	463, 505
PfoI	TCCNGGA	1 cut(s)	1126
PinAI	ACCGGT	1 cut(s)	561
PleI	GAGTC	1 cut(s)	1339
PpsI	GAGTC	1 cut(s)	1339
PpuMI	RGGWCCY	2 cut(s)	579, 2441
Psp5II	RGGWCCY	2 cut(s)	579, 2441
Psp6I	CCWGG	5 cut(s)	498, 1126, 1304, 1401, 1507
PspFI	CCCAGC	1 cut(s)	1898
PspGI	CCWGG	5 cut(s)	498, 1126, 1304, 1401, 1507
PspN4I	GGNNCC	7 cut(s)	6, 301, 318, 1371, 2280, 2442, 2443
PspPPI	RGGWCCY	2 cut(s)	579, 2441
PstI	CTGCAG	2 cut(s)	713, 1092
PsuI	RGATCY	6 cut(s)	222, 922, 1369, 1628, 1943, 2339
PvuII	CAGCTG	1 cut(s)	1120
RsaI	GTAC	4 cut(s)	17, 631, 831, 1576
RsaNI	GTAC	4 cut(s)	16, 630, 830, 1575
RseI	CAYNNNNRTG	2 cut(s)	684, 1019
SacII	CCGCGG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	2532
SchI	GAGTC	1 cut(s)	1340
ScrFI	CCNGG	5 cut(s)	500, 1128, 1306, 1403, 1509
SduI	GDGCHC	5 cut(s)	369, 1046, 1145, 1905, 2116
SfaNI	GCATC	5 cut(s)	463, 611, 1087, 1480, 1729
SfcI	CTRYAG	3 cut(s)	709, 870, 1088
Sfr303I	CCGCGG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	333
SinI	GGWCC	9 cut(s)	205, 299, 317, 454, 559, 579, 1652, 1859, 2441
SmiI	ATTTAAAT	1 cut(s)	2122
SmiMI	CAYNNNNRTG	2 cut(s)	684, 1019
SmlI	CTYRAG	1 cut(s)	1407
SmoI	CTYRAG	1 cut(s)	1407
SseBI	AGGCCT	1 cut(s)	1295
SspI	AATATT	2 cut(s)	1484, 1939
SspMI	CTAG	5 cut(s)	927, 1257, 1263, 1827, 2343
StuI	AGGCCT	1 cut(s)	1295
StyD4I	CCNGG	5 cut(s)	498, 1126, 1304, 1401, 1507
StyI	CCWWGG	1 cut(s)	1256
SwaI	ATTTAAAT	1 cut(s)	2122
TaaI	ACNGT	5 cut(s)	862, 871, 1646, 2102, 2414
TaiI	ACGT	3 cut(s)	1009, 1252, 1429
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	4 cut(s)	308, 335, 338, 341
TfiI	GAWTC	9 cut(s)	239, 290, 494, 1282, 1583, 1634, 1823, 2024, 2042
TscAI	CASTG	3 cut(s)	948, 1097, 1651
TseFI	GTSAC	2 cut(s)	840, 2324
TseI	GCWGC	7 cut(s)	409, 973, 1120, 1352, 1730, 2467, 2470
Tsp45I	GTSAC	2 cut(s)	840, 2324
TspGWI	ACGGA	3 cut(s)	647, 784, 866
TspRI	CASTG	3 cut(s)	948, 1097, 1651
Van91I	CCANNNNNTGG	2 cut(s)	463, 505
VneI	GTGCAC	2 cut(s)	365, 2112
VpaK11BI	GGWCC	9 cut(s)	205, 299, 317, 454, 559, 579, 1652, 1859, 2441
XapI	RAATTY	8 cut(s)	603, 721, 1063, 1309, 1417, 1768, 2005, 2269
XbaI	TCTAGA	2 cut(s)	1826, 2342
XceI	RCATGY	2 cut(s)	1185, 1237
XmaJI	CCTAGG	1 cut(s)	1256
XmiI	GTMKAC	2 cut(s)	931, 2533
XmnI	GAANNNNTTC	1 cut(s)	2156
XspI	CTAG	5 cut(s)	927, 1257, 1263, 1827, 2343
ZraI	GACGTC	1 cut(s)	1427
Zsp2I	ATGCAT	1 cut(s)	1722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.