Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

10328135 .. 10329860

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG061900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCGTGTTTTAATGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAAGTCACTTCTGAAACAAAAATCCGTTAAAAATGTAGTCTGTAAGTTGCTTCATCAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCGGTGATCAAAAAGCCACCCCCAAAAGTGAAGCCGCCTCCTCCCCCTCCAAGAAAACGAGTTGGGCGCGATGACATTGTGATGAAAAAAGGGGACTGCCTATGCTTTAAGTGGGACTTCATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTCTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAATGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGACGAATATATTGAGAACAACATGCAAGAAAAACAACTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCGGATGTTGCTGCTTTTGAATATGCAGATCCAAGGGTTTGATGATTTTGGTGATGAAGATGATGATATTGACAATTACGAGTTGGACACTCGTACTAAAGATTCAGCACAGAACACTTTTCAATTGATTTTTCTGAATTGGAGGGATCTGAATCGGAAAACAGTGAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

223

Amino Acids

25.93

Weight (kDa)

9.01

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	5 cut(s)	23, 49, 134, 523, 654
AcsI	RAATTY	2 cut(s)	280, 477
AfaI	GTAC	2 cut(s)	48, 595
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	520, 623
AhdI	GACNNNNNGTC	1 cut(s)	498
AjnI	CCWGG	2 cut(s)	343, 472
AluBI	AGCT	2 cut(s)	121, 337
AluI	AGCT	2 cut(s)	121, 337
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	5 cut(s)	23, 49, 134, 523, 654
ApeKI	GCWGC	2 cut(s)	337, 511
ApoI	RAATTY	2 cut(s)	280, 477
AspLEI	GCGC	2 cut(s)	225, 423
AsuHPI	GGTGA	2 cut(s)	172, 563
BbvI	GCAGC	2 cut(s)	324, 498
BciT130I	CCWGG	2 cut(s)	345, 474
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	3 cut(s)	191, 338, 512
BlsI	GCNGC	3 cut(s)	192, 339, 513
Bme1390I	CCNGG	2 cut(s)	345, 474
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmrFI	CCNGG	2 cut(s)	345, 474
BmsI	GCATC	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	2 cut(s)	345, 474
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	510
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	113
BseRI	GAGGAG	2 cut(s)	144, 186
BseXI	GCAGC	2 cut(s)	324, 498
Bsh1236I	CGCG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	263, 284
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	2 cut(s)	263, 284
BsmI	GAATGC	1 cut(s)	362
Bsp143I	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	5 cut(s)	23, 49, 134, 523, 654
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	345, 474
Bst4CI	ACNGT	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	305, 419
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	510
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	225, 423
BstKTI	GATC	6 cut(s)	31, 44, 142, 165, 531, 649
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	2 cut(s)	345, 474
BstNSI	RCATGY	2 cut(s)	402, 454
BstSCI	CCNGG	2 cut(s)	343, 472
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	324, 498
BstX2I	RGATCY	3 cut(s)	139, 528, 646
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	3 cut(s)	139, 528, 646
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	305, 419
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	2 cut(s)	225, 423
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	47, 594
CviAII	CATG	3 cut(s)	277, 399, 451
CviJI	RGCY	6 cut(s)	24, 121, 172, 190, 297, 337
CviKI_1	RGCY	6 cut(s)	24, 121, 172, 190, 297, 337
CviQI	GTAC	2 cut(s)	47, 594
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	6 cut(s)	30, 43, 141, 164, 530, 648
DpnII	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
DraI	TTTAAA	1 cut(s)	378
DriI	GACNNNNNGTC	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	343, 472
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	3 cut(s)	280, 402, 454
FaiI	YATR	9 cut(s)	21, 35, 259, 278, 395, 400, 438, 452, 524
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	2 cut(s)	263, 284
FatI	CATG	3 cut(s)	276, 398, 450
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	191, 338, 512
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	3 cut(s)	191, 338, 512
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	224, 422
GluI	GCNGC	3 cut(s)	191, 338, 512
HaeII	RGCGCY	1 cut(s)	424
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	225, 423
Hin1II	CATG	3 cut(s)	280, 402, 454
Hin6I	GCGC	2 cut(s)	223, 421
HinP1I	GCGC	2 cut(s)	223, 421
HinfI	GANTC	3 cut(s)	499, 602, 652
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	172, 563
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	6 cut(s)	66, 313, 504, 636, 651, 657
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4V	TGCA	5 cut(s)	307, 369, 417, 454, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	280, 402, 454
HspAI	GCGC	2 cut(s)	223, 421
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
Lsp1109I	GCAGC	2 cut(s)	324, 498
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	6 cut(s)	30, 43, 141, 164, 530, 648
MboI	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
MboII	GAAGA	1 cut(s)	569
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	3 cut(s)	139, 528, 646
MluCI	AATT	6 cut(s)	280, 379, 477, 574, 623, 637
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	2 cut(s)	482, 564
MnlI	CCTC	6 cut(s)	162, 165, 204, 207, 213, 636
MseI	TTAA	4 cut(s)	11, 81, 264, 377
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	345, 474
MunI	CAATTG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	345, 474
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
NlaIII	CATG	3 cut(s)	280, 402, 454
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	2 cut(s)	402, 454
PagI	TCATGA	1 cut(s)	276
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	602, 652
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	192, 339, 513
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	343, 472
PspGI	CCWGG	2 cut(s)	343, 472
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	3 cut(s)	139, 528, 646
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	48, 595
RsaNI	GTAC	2 cut(s)	47, 594
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	11, 81, 264, 377
SatI	GCNGC	3 cut(s)	191, 338, 512
Sau3AI	GATC	6 cut(s)	28, 41, 139, 162, 528, 646
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	345, 474
SetI	ASST	5 cut(s)	114, 123, 154, 339, 430
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	6 cut(s)	280, 379, 477, 574, 623, 637
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	343, 472
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	1 cut(s)	664
TasI	AATT	6 cut(s)	280, 379, 477, 574, 623, 637
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	602, 652
Tru1I	TTAA	4 cut(s)	11, 81, 264, 377
Tru9I	TTAA	4 cut(s)	11, 81, 264, 377
TscAI	CASTG	1 cut(s)	669
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	337, 511
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	6 cut(s)	95, 254, 265, 293, 395, 570
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	669
XapI	RAATTY	2 cut(s)	280, 477
XceI	RCATGY	2 cut(s)	402, 454
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.